/*
Return number of bytes read. Return -1 on errors and EOF.
*/
PUBLIC ssize sslRead(Webs *wp, void *buf, ssize len)
{
Ms *ms;
ssize bytes;
if (len <= 0) {
return -1;
}
bytes = innerRead(wp, buf, len);
ms = (Ms*) wp->ssl;
if (ms->more) {
wp->flags |= SOCKET_BUFFERED_READ;
socketReservice(wp->sid);
}
return bytes;
}
/**
* The readcell function implements the old GENESIS cellreader
* functionality.
*/
Id ReadCell::read(
const string& fileName,
const string& cellName,
Id parent )
{
fileName_ = fileName;
ifstream fin( fileName.c_str() );
if ( !fin ) {
cerr << "ReadCell::read -- could not open file " << fileName << ".\n";
return Id();
}
/*
// Search for file in list of paths.
PathUtility pathUtil( Property::getProperty( Property::SIMPATH ) );
ifstream fin( filename.c_str() );
for (unsigned int i = 0; i < pathUtil.size() && !fin; ++i )
{
string path = pathUtil.makeFilePath(filename, i);
fin.clear( );
fin.open( path.c_str() );
}
if ( !fin ) {
cerr << "ReadCell::read -- could not open file " << filename << endl;
return Id();
}
*/
unsigned int size = 1;
if ( parent.element()->cinfo()->isA( "Neuron" ) ) {
cell_ = parent;
currCell_ = cell_;
} else {
cell_ = shell_->doCreate( "Neuron", parent,
cellName, size, MooseGlobal );
currCell_ = cell_;
}
if ( innerRead( fin ) ) {
return cell_;
} else {
cerr << "Readcell failed.\n";
return Id();
}
}
/**
* The readcell function implements the old GENESIS cellreader
* functionality. Although it is really a parser operation, I
* put it here in Kinetics because the cell format is independent
* of parser and is likely to remain a legacy for a while.
*/
Id ReadKkit::read(
const string& filename,
const string& modelname,
Id pa, const string& methodArg )
{
string method = methodArg;
ifstream fin( filename.c_str() );
if (!fin){
cerr << "ReadKkit::read: could not open file " << filename << endl;
return Id();
}
if ( method.substr(0, 4) == "old_" ) {
moveOntoCompartment_ = false;
method = method.substr( 4 );
}
Shell* s = reinterpret_cast< Shell* >( ObjId().data() );
Id mgr = makeStandardElements( pa, modelname );
assert( mgr != Id() );
baseId_ = mgr;
basePath_ = mgr.path();
enzCplxMols_.resize( 0 );
innerRead( fin );
assignPoolCompartments();
assignReacCompartments();
assignEnzCompartments();
assignMMenzCompartments();
convertParametersToConcUnits();
s->doSetClock( 8, plotdt_ );
string plotpath = basePath_ + "/graphs/##[TYPE=Table]," +
basePath_ + "/moregraphs/##[TYPE=Table]";
s->doUseClock( plotpath, "process", 8 );
setMethod( s, mgr, simdt_, plotdt_, method );
s->doReinit();
return mgr;
}
/*
Return number of bytes read. Return -1 on errors and EOF.
*/
PUBLIC ssize sslRead(Webs *wp, void *buf, ssize len)
{
Ms *ms;
WebsSocket *sp;
ssize bytes;
if (len <= 0) {
return -1;
}
bytes = innerRead(wp, buf, len);
ms = (Ms*) wp->ssl;
if (ms->more) {
if ((sp = socketPtr(wp->sid)) != 0) {
socketHiddenData(sp, ms->more, SOCKET_READABLE);
}
}
return bytes;
}
