void DrawTool::parseGroup(xercesc::DOMElement * parentNode, crispr::xml::parser& xmlParser)
{
// create a new graph object
char * c_gid = tc(parentNode->getAttribute(xmlParser.attr_Gid()));
crispr::graph * current_graph = new crispr::graph(c_gid);
xr(&c_gid);
// change the max and min coverages back to their original values
resetInitialLimits();
DT_Graphs.push_back(current_graph);
for (xercesc::DOMElement * currentElement = parentNode->getFirstElementChild();
currentElement != NULL;
currentElement = currentElement->getNextElementSibling()) {
if (xercesc::XMLString::equals(currentElement->getTagName(), xmlParser.tag_Data())) {
parseData(currentElement, xmlParser, current_graph);
setColours();
} else if (xercesc::XMLString::equals(currentElement->getTagName(), xmlParser.tag_Assembly())) {
parseAssembly(currentElement, xmlParser, current_graph);
}
}
char * c_file_prefix = tc(parentNode->getAttribute(xmlParser.attr_Gid()));
std::string file_prefix = c_file_prefix;
std::string file_name = file_prefix + "." + DT_OutputFormat;
xr(&c_file_prefix);
char * file_name_c = strdup(file_name.c_str());
layoutGraph(current_graph->getGraph(), DT_RenderingAlgorithm);
renderGraphToFile(current_graph->getGraph(), DT_OutputFormat, file_name_c);
freeLayout(current_graph->getGraph());
// free the duplicated string
try {
delete file_name_c;
} catch (std::exception& e) {
std::cerr<<e.what()<<std::endl;
}
}
void Trace::layoutGraph(wxString infile)
{
layoutGraph(infile.ToAscii(), (const char *) outputfile);
}
void Trace::layoutGraph(const char *infile)
{
layoutGraph(infile, (const char *) outputfile);
}