int main_homodyne(int argc, char* argv[])
{
bool clear = false;
const char* phase_ref = NULL;
int com;
while (-1 != (com = getopt(argc, argv, "hCP:"))) {
switch (com) {
case 'C':
clear = true;
break;
case 'P':
phase_ref = strdup(optarg);
break;
case 'h':
help(argv[0], stdout);
exit(0);
default:
help(argv[0], stderr);
exit(1);
}
}
if (argc - optind != 4) {
usage(argv[0], stderr);
exit(1);
}
const int N = DIMS;
long dims[N];
complex float* idata = load_cfl(argv[optind + 2], N, dims);
complex float* data = create_cfl(argv[optind + 3], N, dims);
int pfdim = atoi(argv[optind + 0]);
float frac = atof(argv[optind + 1]);
assert((0 <= pfdim) && (pfdim < N));
assert(frac > 0.);
long strs[N];
md_calc_strides(N, strs, dims, CFL_SIZE);
struct wdata wdata;
wdata.frac = frac;
wdata.pfdim = pfdim;
md_select_dims(N, MD_BIT(pfdim), wdata.wdims, dims);
md_calc_strides(N, wdata.wstrs, wdata.wdims, CFL_SIZE);
wdata.weights = md_alloc(N, wdata.wdims, CFL_SIZE);
md_loop(N, wdata.wdims, &wdata, comp_weights);
long pstrs[N];
long pdims[N];
complex float* phase = NULL;
if (NULL == phase_ref) {
phase = estimate_phase(wdata, FFT_FLAGS, N, dims, idata);
md_copy_dims(N, pdims, dims);
}
else
phase = load_cfl(phase_ref, N, pdims);
md_calc_strides(N, pstrs, pdims, CFL_SIZE);
complex float* cdata = NULL;
complex float* idata2 = NULL;
if (clear) {
long cdims[N];
md_select_dims(N, ~MD_BIT(pfdim), cdims, dims);
cdims[pfdim] = (int)(dims[pfdim] * frac);
cdata = md_alloc(N, cdims, CFL_SIZE);
idata2 = anon_cfl(NULL, N, dims);
md_resize(N, cdims, cdata, dims, idata, CFL_SIZE);
md_resize(N, dims, idata2, cdims, cdata, CFL_SIZE);
md_free(cdata);
unmap_cfl(N, dims, idata);
idata = idata2;
}
if ((1 == dims[PHS2_DIM]) || (PHS2_DIM == pfdim)) {
homodyne(wdata, FFT_FLAGS, N, dims, strs, data, idata, pstrs, phase);
} else {
unsigned int pardim = PHS2_DIM;
ifftuc(N, dims, MD_CLEAR(FFT_FLAGS, pfdim), data, idata);
long rdims[N];
md_select_dims(N, ~MD_BIT(pardim), rdims, dims);
long rstrs[N];
md_calc_strides(N, rstrs, rdims, CFL_SIZE);
#pragma omp parallel for
for (unsigned int i = 0; i < dims[pardim]; i++) {
complex float* tmp = md_alloc(N, rdims, CFL_SIZE);
long pos[N];
md_set_dims(N, pos, 0);
pos[pardim] = i;
md_copy_block(N, pos, rdims, tmp, dims, data, CFL_SIZE);
homodyne(wdata, MD_BIT(pfdim), N, rdims, rstrs, tmp, tmp, pstrs, phase);
md_copy_block(N, pos, dims, data, rdims, tmp, CFL_SIZE);
md_free(tmp);
}
}
md_free(wdata.weights);
if (NULL == phase_ref)
md_free(phase);
else {
unmap_cfl(N, pdims, phase);
free((void*)phase_ref);
}
unmap_cfl(N, dims, idata);
unmap_cfl(N, dims, data);
exit(0);
}
int main_homodyne(int argc, char* argv[])
{
bool clear = false;
bool image = false;
const char* phase_ref = NULL;
float alpha = 0.;
num_init();
const struct opt_s opts[] = {
{ 'r', true, opt_float, &alpha, " <alpha>\tOffset of ramp filter, between 0 and 1. alpha=0 is a full ramp, alpha=1 is a horizontal line" },
{ 'I', false, opt_set, &image, "\tInput is in image domain" },
{ 'C', false, opt_set, &clear, "\tClear unacquired portion of kspace" },
{ 'P', true, opt_string, &phase_ref, " <phase_ref>\tUse <phase_ref> as phase reference" },
};
cmdline(&argc, argv, 4, 4, usage_str, help_str, ARRAY_SIZE(opts), opts);
const int N = DIMS;
long dims[N];
complex float* idata = load_cfl(argv[3], N, dims);
complex float* data = create_cfl(argv[4], N, dims);
int pfdim = atoi(argv[1]);
float frac = atof(argv[2]);
assert((0 <= pfdim) && (pfdim < N));
assert(frac > 0.);
if (image) {
complex float* ksp_in = md_alloc(N, dims, CFL_SIZE);
fftuc(N, dims, FFT_FLAGS, ksp_in, idata);
md_copy(N, dims, idata, ksp_in, CFL_SIZE);
md_free(ksp_in);
}
long strs[N];
md_calc_strides(N, strs, dims, CFL_SIZE);
struct wdata wdata;
wdata.frac = frac;
wdata.pfdim = pfdim;
md_select_dims(N, MD_BIT(pfdim), wdata.wdims, dims);
md_calc_strides(N, wdata.wstrs, wdata.wdims, CFL_SIZE);
wdata.weights = md_alloc(N, wdata.wdims, CFL_SIZE);
wdata.alpha = alpha;
wdata.clear = clear;
md_loop(N, wdata.wdims, &wdata, comp_weights);
long pstrs[N];
long pdims[N];
complex float* phase = NULL;
if (NULL == phase_ref) {
phase = estimate_phase(wdata, FFT_FLAGS, N, dims, idata);
md_copy_dims(N, pdims, dims);
}
else
phase = load_cfl(phase_ref, N, pdims);
md_calc_strides(N, pstrs, pdims, CFL_SIZE);
homodyne(wdata, FFT_FLAGS, N, dims, strs, data, idata, pstrs, phase);
md_free(wdata.weights);
if (NULL == phase_ref)
md_free(phase);
else {
unmap_cfl(N, pdims, phase);
free((void*)phase_ref);
}
unmap_cfl(N, dims, idata);
unmap_cfl(N, dims, data);
exit(0);
}
int main_homodyne(int argc, char* argv[])
{
mini_cmdline(argc, argv, 4, usage_str, help_str);
const int N = DIMS;
long dims[N];
complex float* idata = load_cfl(argv[3], N, dims);
complex float* data = create_cfl(argv[4], N, dims);
int pfdim = atoi(argv[1]);
float frac = atof(argv[2]);
assert((0 <= pfdim) && (pfdim < N));
assert(frac > 0.);
long strs[N];
md_calc_strides(N, strs, dims, CFL_SIZE);
struct wdata wdata;
wdata.frac = frac;
wdata.pfdim = pfdim;
md_select_dims(N, MD_BIT(pfdim), wdata.wdims, dims);
md_calc_strides(N, wdata.wstrs, wdata.wdims, CFL_SIZE);
wdata.weights = md_alloc(N, wdata.wdims, CFL_SIZE);
md_loop(N, wdata.wdims, &wdata, comp_weights);
if ((1 == dims[PHS2_DIM]) || (PHS2_DIM == pfdim)) {
homodyne(wdata, FFT_FLAGS, N, dims, strs, data, idata);
} else {
unsigned int pardim = PHS2_DIM;
ifftuc(N, dims, MD_CLEAR(FFT_FLAGS, pfdim), data, idata);
long rdims[N];
md_select_dims(N, ~MD_BIT(pardim), rdims, dims);
long rstrs[N];
md_calc_strides(N, rstrs, rdims, CFL_SIZE);
#pragma omp parallel for
for (unsigned int i = 0; i < dims[pardim]; i++) {
complex float* tmp = md_alloc(N, rdims, CFL_SIZE);
long pos[N];
md_set_dims(N, pos, 0);
pos[pardim] = i;
md_copy_block(N, pos, rdims, tmp, dims, data, CFL_SIZE);
homodyne(wdata, MD_BIT(pfdim), N, rdims, rstrs, tmp, tmp);
md_copy_block(N, pos, dims, data, rdims, tmp, CFL_SIZE);
md_free(tmp);
}
}
md_free(wdata.weights);
unmap_cfl(N, dims, idata);
unmap_cfl(N, dims, data);
exit(0);
}
