void iter2_ist(void* _conf,
		const struct operator_s* normaleq_op,
		unsigned int D,
		const struct operator_p_s** prox_ops,
		const struct linop_s** ops,
		const struct operator_p_s* xupdate_op,
		long size, float* image, const float* image_adj,
		const float* image_truth,
		void* obj_eval_data,
		float (*obj_eval)(const void*, const float*))
{

	assert(D == 1);
#if 0
	assert(NULL == ops);
#else
	UNUSED(ops);
#endif
	UNUSED(xupdate_op);

	struct iter_ist_conf* conf = _conf;

	float eps = md_norm(1, MD_DIMS(size), image_adj);

	if (checkeps(eps))
		goto cleanup;

	assert((conf->continuation >= 0.) && (conf->continuation <= 1.));

	ist(conf->maxiter, eps * conf->tol, conf->step, conf->continuation, conf->hogwild, size, (void*)normaleq_op, select_vecops(image_adj), operator_iter, operator_p_iter, (void*)prox_ops[0], image, image_adj, image_truth, obj_eval_data, obj_eval);


cleanup:
	;
}
示例#2
0
文件: iter2.c 项目: mrirecon/bart
void iter2_fista(iter_conf* _conf,
		const struct operator_s* normaleq_op,
		unsigned int D,
		const struct operator_p_s* prox_ops[D],
		const struct linop_s* ops[D],
		const float* biases[D],
		const struct operator_p_s* xupdate_op,
		long size, float* image, const float* image_adj,
		struct iter_monitor_s* monitor)
{
	assert(D == 1);
	assert(NULL == biases);
#if 0
	assert(NULL == ops);
#else
	UNUSED(ops);
#endif
	UNUSED(xupdate_op);

	auto conf = CAST_DOWN(iter_fista_conf, _conf);

	float eps = md_norm(1, MD_DIMS(size), image_adj);

	if (checkeps(eps))
		goto cleanup;

	assert((conf->continuation >= 0.) && (conf->continuation <= 1.));

	fista(conf->maxiter, eps * conf->tol, conf->step, conf->continuation, conf->hogwild, size, select_vecops(image_adj),
		OPERATOR2ITOP(normaleq_op), OPERATOR_P2ITOP(prox_ops[0]), image, image_adj, monitor);

cleanup:
	;
}
void iter2_conjgrad(void* _conf,
		const struct operator_s* normaleq_op,
		unsigned int D,
		const struct operator_p_s** prox_ops,
		const struct linop_s** ops,
		const struct operator_p_s* xupdate_op,
		long size, float* image, const float* image_adj,
		const float* image_truth,
		void* obj_eval_data,
		float (*obj_eval)(const void*, const float*))
{

	assert(0 == D);
	assert(NULL == prox_ops);
	assert(NULL == ops);
	UNUSED(xupdate_op);

	struct iter_conjgrad_conf* conf = _conf;

	float eps = md_norm(1, MD_DIMS(size), image_adj);

	if (checkeps(eps))
		goto cleanup;

	conjgrad(conf->maxiter, conf->l2lambda, eps * conf->tol, size, (void*)normaleq_op, select_vecops(image_adj), operator_iter, image, image_adj, image_truth, obj_eval_data, obj_eval);

cleanup:
	;
}
示例#4
0
文件: iter2.c 项目: mrirecon/bart
void iter2_conjgrad(iter_conf* _conf,
		const struct operator_s* normaleq_op,
		unsigned int D,
		const struct operator_p_s* prox_ops[D],
		const struct linop_s* ops[D],
		const float* biases[D],
		const struct operator_p_s* xupdate_op,
		long size, float* image, const float* image_adj,
		struct iter_monitor_s* monitor)
{
	assert(0 == D);
	assert(NULL == prox_ops);
	assert(NULL == ops);
	assert(NULL == biases);
	UNUSED(xupdate_op);

	auto conf = CAST_DOWN(iter_conjgrad_conf, _conf);

	float eps = md_norm(1, MD_DIMS(size), image_adj);

	if (checkeps(eps))
		goto cleanup;

	conjgrad(conf->maxiter, conf->l2lambda, eps * conf->tol, size, select_vecops(image_adj),
			OPERATOR2ITOP(normaleq_op), image, image_adj, monitor);

cleanup:
	;
}
示例#5
0
文件: iter.c 项目: cbasasif/bart
void iter_landweber(iter_conf* _conf,
		const struct operator_s* normaleq_op,
		const struct operator_p_s* thresh_prox,
		long size, float* image, const float* image_adj,
		const float* image_truth,
		void* objval_data,
		float (*obj_eval)(const void*, const float*))
{
	struct iter_landweber_conf* conf = CONTAINER_OF(_conf, struct iter_landweber_conf, base);

	float eps = md_norm(1, MD_DIMS(size), image_adj);

	if (checkeps(eps))
		goto cleanup;

	assert(NULL == thresh_prox);

	UNUSED(obj_eval);
	UNUSED(objval_data);
	UNUSED(image_truth);

	landweber_sym(conf->maxiter, 1.E-3 * eps, conf->step, size, (void*)normaleq_op, select_vecops(image_adj), operator_iter, image, image_adj);

cleanup:
	;
}
示例#6
0
static void inverse(void* _data, float alpha, float* dst, const float* src)
{
        struct irgnm_s* data = _data;

	md_clear(1, MD_DIMS(data->size), dst, FL_SIZE);

        float eps = md_norm(1, MD_DIMS(data->size), src);
        conjgrad(100, alpha, 0.1f * eps, data->size, (void*)data, select_vecops(src), normal, dst, src, NULL, NULL, NULL);
}
示例#7
0
文件: prox.c 项目: mjacob75/bart
/**
 * Proximal function for f(z) = lambda  || z ||_2.
 * Solution is z =  ( 1 - lambda * mu / norm(z) )_+ * z,
 * i.e. block soft thresholding
 *
 * @param prox_data should be of type prox_l2norm_data
 * @param mu proximal penalty
 * @param z output
 * @param x_plus_u input
 */
static void prox_l2norm_fun(const operator_data_t* prox_data, float mu, float* z, const float* x_plus_u)
{
	struct prox_l2norm_data* pdata = CAST_DOWN(prox_l2norm_data, prox_data);

	md_clear(1, MD_DIMS(pdata->size), z, FL_SIZE);

	double q1 = md_norm(1, MD_DIMS(pdata->size), x_plus_u);

	if (q1 != 0) {
		double q2 = 1 - pdata->lambda * mu / q1;

		if (q2 > 0.)
			md_smul(1, MD_DIMS(pdata->size), z, x_plus_u, q2);
	}
}
示例#8
0
文件: prox.c 项目: mjacob75/bart
/**
 * Proximal function for f(z) = Ind{ || y - z ||_2 < eps }
 * 
 * @param prox_data should be of type prox_l2ball_data
 * @param mu proximal penalty
 * @param z output
 * @param x_plus_u input
 */
static void prox_l2ball_fun(const operator_data_t* prox_data, float mu, float* z, const float* x_plus_u)
{
	UNUSED(mu);
	struct prox_l2ball_data* pdata = CAST_DOWN(prox_l2ball_data, prox_data);

	if (NULL != pdata->center)
		md_sub(1, MD_DIMS(pdata->size), z, x_plus_u, pdata->center);
	else
		md_copy(1, MD_DIMS(pdata->size), z, x_plus_u, FL_SIZE);

	float q1 = md_norm(1, MD_DIMS(pdata->size), z);

	if (q1 > pdata->eps)
		md_smul(1, MD_DIMS(pdata->size), z, z, pdata->eps / q1);

	if (NULL != pdata->center)
		md_add(1, MD_DIMS(pdata->size), z, z, pdata->center);
}
示例#9
0
文件: iter2.c 项目: mrirecon/bart
/* Chambolle Pock Primal Dual algorithm. Solves G(x) + F(Ax)
 * Assumes that G is in prox_ops[0], F is in prox_ops[1], A is in ops[1]
 */
void iter2_chambolle_pock(iter_conf* _conf,
		const struct operator_s* normaleq_op,
		unsigned int D,
		const struct operator_p_s* prox_ops[D],
		const struct linop_s* ops[D],
		const float* biases[D],
		const struct operator_p_s* xupdate_op,
		long size, float* image, const float* image_adj,
		struct iter_monitor_s* monitor)
{
	assert(D == 2);
	assert(NULL == biases);
	assert(NULL == normaleq_op);

	UNUSED(xupdate_op);
	UNUSED(image_adj);

	auto conf = CAST_DOWN(iter_chambolle_pock_conf, _conf);

	const struct iovec_s* iv = linop_domain(ops[1]);
	const struct iovec_s* ov = linop_codomain(ops[1]);

	assert((long)md_calc_size(iv->N, iv->dims) * 2 == size);

	// FIXME: sensible way to check for corrupt data?
#if 0
	float eps = md_norm(1, MD_DIMS(size), image_adj);

	if (checkeps(eps))
		goto cleanup;
#else
	float eps = 1.;
#endif


	chambolle_pock(conf->maxiter, eps * conf->tol, conf->tau, conf->sigma, conf->theta, conf->decay, 2 * md_calc_size(iv->N, iv->dims), 2 * md_calc_size(ov->N, ov->dims), select_vecops(image),
			OPERATOR2ITOP(ops[1]->forward), OPERATOR2ITOP(ops[1]->adjoint), OPERATOR_P2ITOP(prox_ops[1]), OPERATOR_P2ITOP(prox_ops[0]), 
			image, monitor);

	//cleanup:
	//;
}
示例#10
0
文件: iter.c 项目: jaeseung16/bart
void iter_landweber(iter_conf* _conf,
		const struct operator_s* normaleq_op,
		const struct operator_p_s* thresh_prox,
		long size, float* image, const float* image_adj,
		struct iter_monitor_s* monitor)
{
	struct iter_landweber_conf* conf = CAST_DOWN(iter_landweber_conf, _conf);

	float eps = md_norm(1, MD_DIMS(size), image_adj);

	if (checkeps(eps))
		goto cleanup;

	assert(NULL == thresh_prox);

	landweber_sym(conf->maxiter, 1.E-3 * eps, conf->step, size, select_vecops(image_adj),
			OPERATOR2ITOP(normaleq_op), image, image_adj, monitor);

cleanup:
	;
}
示例#11
0
void iter2_admm(void* _conf,
		const struct operator_s* normaleq_op,
		unsigned int D,
		const struct operator_p_s** prox_ops,
		const struct linop_s** ops,
		const struct operator_p_s* xupdate_op,
		long size, float* image, const float* image_adj,
		const float* image_truth,
		void* obj_eval_data,
		float (*obj_eval)(const void*, const float*))
{
	struct iter_admm_conf* conf = _conf;

	struct admm_plan_s admm_plan = {

		.maxiter = conf->maxiter,
		.maxitercg = conf->maxitercg,
		.rho = conf->rho,
		.image_truth = image_truth,
		.num_funs = D,
		.do_warmstart = conf->do_warmstart,
		.dynamic_rho = conf->dynamic_rho,
		.hogwild = conf->hogwild,
		.ABSTOL = conf->ABSTOL,
		.RELTOL = conf->RELTOL,
		.alpha = conf->alpha,
		.tau = conf->tau,
		.mu = conf->mu,
		.fast = conf->fast,
	};


	struct admm_op a_ops[D];
	struct admm_prox_op a_prox_ops[D];

	for (unsigned int i = 0; i < D; i++) {

		a_ops[i].forward = linop_forward_iter;
		a_ops[i].normal = linop_normal_iter;
		a_ops[i].adjoint =  linop_adjoint_iter;
		a_ops[i].data = (void*)ops[i];

		a_prox_ops[i].prox_fun = operator_p_iter;
		a_prox_ops[i].data = (void*)prox_ops[i];
	}

	admm_plan.ops = a_ops;
	admm_plan.prox_ops = a_prox_ops;

	admm_plan.xupdate_fun = operator_p_iter;
	admm_plan.xupdate_data = (void*)xupdate_op;


	struct admm_history_s admm_history;

	long z_dims[D];

	for (unsigned int i = 0; i < D; i++)
		z_dims[i] = 2 * md_calc_size(linop_codomain(ops[i])->N, linop_codomain(ops[i])->dims);

	if (NULL != image_adj) {

		float eps = md_norm(1, MD_DIMS(size), image_adj);

		if (checkeps(eps))
			goto cleanup;
	}

	admm(&admm_history, &admm_plan, admm_plan.num_funs, z_dims, size, (float*)image, image_adj, select_vecops(image), operator_iter, (void*)normaleq_op, obj_eval_data, obj_eval);

cleanup:
	;

}


void iter2_pocs(void* _conf,
		const struct operator_s* normaleq_op,
		unsigned int D,
		const struct operator_p_s** prox_ops,
		const struct linop_s** ops,
		const struct operator_p_s* xupdate_op,
		long size, float* image, const float* image_adj,
		const float* image_truth,
		void* obj_eval_data,
		float (*obj_eval)(const void*, const float*))
{

	const struct iter_pocs_conf* conf = _conf;

	assert(NULL == normaleq_op);
	assert(NULL == ops);
	assert(NULL == image_adj);

	UNUSED(xupdate_op);
	UNUSED(image_adj);
	
	struct pocs_proj_op proj_ops[D];

	for (unsigned int i = 0; i < D; i++) {

		proj_ops[i].proj_fun = operator_p_iter;
		proj_ops[i].data = (void*)prox_ops[i];
	}

	pocs(conf->maxiter, D, proj_ops, select_vecops(image), size, image, image_truth, obj_eval_data, obj_eval);
}


void iter2_call_iter(void* _conf,
		const struct operator_s* normaleq_op,
		unsigned int D,
		const struct operator_p_s** prox_ops,
		const struct linop_s** ops,
		const struct operator_p_s* xupdate_op,
		long size, float* image, const float* image_adj,
		const float* image_truth,
		void* obj_eval_data,
		float (*obj_eval)(const void*, const float*))
{
	assert(D <= 1);
	assert(NULL == ops);

	UNUSED(xupdate_op);

	struct iter_call_s* it = _conf;
	it->fun(it->_conf, normaleq_op, (1 == D) ? prox_ops[0] : NULL,
		size, image, image_adj,
		image_truth, obj_eval_data, obj_eval);
}
示例#12
0
文件: iter2.c 项目: mrirecon/bart
void iter2_niht(iter_conf* _conf,
		const struct operator_s* normaleq_op,
		unsigned int D,
		const struct operator_p_s* prox_ops[D],
		const struct linop_s* ops[D],
		const float* biases[D],
		const struct operator_p_s* xupdate_op,
		long size, float* image, const float* image_adj,
		struct iter_monitor_s* monitor)
{
	UNUSED(xupdate_op);
	UNUSED(biases);

	assert(D == 1);
	
	auto conf = CAST_DOWN(iter_niht_conf, _conf);
  
	struct niht_conf_s niht_conf = {
    
		.maxiter = conf->maxiter,
		.N = size,
		.trans = 0,
		.do_warmstart = conf->do_warmstart,
	};

	struct niht_transop trans;

	if (NULL != ops) {

		trans.forward = OPERATOR2ITOP(ops[0]->forward);
		trans.adjoint = OPERATOR2ITOP(ops[0]->adjoint);
		trans.N = 2 * md_calc_size(linop_codomain(ops[0])->N, linop_codomain(ops[0])->dims);
		niht_conf.trans = 1;
	}		
	
	float eps = md_norm(1, MD_DIMS(size), image_adj);

	if (checkeps(eps))
		goto cleanup;
  
	niht_conf.epsilon = eps * conf->tol;

	niht(&niht_conf, &trans, select_vecops(image_adj), OPERATOR2ITOP(normaleq_op), OPERATOR_P2ITOP(prox_ops[0]), image, image_adj, monitor);

cleanup:
	;
}
  
void iter2_call_iter(iter_conf* _conf,
		const struct operator_s* normaleq_op,
		unsigned int D,
		const struct operator_p_s* prox_ops[D],
		const struct linop_s* ops[D],
		const float* biases[D],
		const struct operator_p_s* xupdate_op,
		long size, float* image, const float* image_adj,
		struct iter_monitor_s* monitor)
{
	assert(D <= 1);
	assert(NULL == ops);
	assert(NULL == biases);

	UNUSED(xupdate_op);

	auto it = CAST_DOWN(iter_call_s, _conf);

	it->fun(it->_conf, normaleq_op, (1 == D) ? prox_ops[0] : NULL,
		size, image, image_adj, monitor);
}
示例#13
0
文件: iter2.c 项目: mrirecon/bart
void iter2_admm(iter_conf* _conf,
		const struct operator_s* normaleq_op,
		unsigned int D,
		const struct operator_p_s* prox_ops[D],
		const struct linop_s* ops[D],
		const float* biases[D],
		const struct operator_p_s* xupdate_op,
		long size, float* image, const float* image_adj,
		struct iter_monitor_s* monitor)
{
	auto conf = CAST_DOWN(iter_admm_conf, _conf);

	struct admm_plan_s admm_plan = {

		.maxiter = conf->maxiter,
		.maxitercg = conf->maxitercg,
		.cg_eps = conf->cg_eps,
		.rho = conf->rho,
		.num_funs = D,
		.do_warmstart = conf->do_warmstart,
		.dynamic_rho = conf->dynamic_rho,
		.dynamic_tau = conf->dynamic_tau,
		.relative_norm = conf->relative_norm,
		.hogwild = conf->hogwild,
		.ABSTOL = conf->ABSTOL,
		.RELTOL = conf->RELTOL,
		.alpha = conf->alpha,
		.tau = conf->tau,
		.tau_max = conf->tau_max,
		.mu = conf->mu,
		.fast = conf->fast,
		.biases = biases,
	};


	struct admm_op a_ops[D ?:1];
	struct iter_op_p_s a_prox_ops[D ?:1];

	for (unsigned int i = 0; i < D; i++) {

		a_ops[i].forward = OPERATOR2ITOP(ops[i]->forward),
		a_ops[i].normal = OPERATOR2ITOP(ops[i]->normal);
		a_ops[i].adjoint = OPERATOR2ITOP(ops[i]->adjoint);

		a_prox_ops[i] = OPERATOR_P2ITOP(prox_ops[i]);
	}

	admm_plan.ops = a_ops;
	admm_plan.prox_ops = a_prox_ops;

	admm_plan.xupdate = OPERATOR_P2ITOP(xupdate_op);


	long z_dims[D ?: 1];

	for (unsigned int i = 0; i < D; i++)
		z_dims[i] = 2 * md_calc_size(linop_codomain(ops[i])->N, linop_codomain(ops[i])->dims);

	if (NULL != image_adj) {

		float eps = md_norm(1, MD_DIMS(size), image_adj);

		if (checkeps(eps))
			goto cleanup;
	}

	admm(&admm_plan, admm_plan.num_funs, z_dims, size, (float*)image, image_adj, select_vecops(image), OPERATOR2ITOP(normaleq_op), monitor);

cleanup:
	;

}


void iter2_pocs(iter_conf* _conf,
		const struct operator_s* normaleq_op,
		unsigned int D,
		const struct operator_p_s* prox_ops[D],
		const struct linop_s* ops[D],
		const float* biases[D],
		const struct operator_p_s* xupdate_op,
		long size, float* image, const float* image_adj,
		struct iter_monitor_s* monitor)
{
	auto conf = CAST_DOWN(iter_pocs_conf, _conf);

	assert(NULL == normaleq_op);
	assert(NULL == ops);
	assert(NULL == biases);
	assert(NULL == image_adj);

	UNUSED(xupdate_op);
	UNUSED(image_adj);
	
	struct iter_op_p_s proj_ops[D];

	for (unsigned int i = 0; i < D; i++)
		proj_ops[i] = OPERATOR_P2ITOP(prox_ops[i]);

	pocs(conf->maxiter, D, proj_ops, select_vecops(image), size, image, monitor);
}
示例#14
0
		const struct linop_s* ops[static D],
		const struct operator_p_s* xupdate_op,
		long size, float* image, const float* image_adj,
		const float* image_truth,
		void* obj_eval_data,
		float (*obj_eval)(const void*, const float*))
{

	assert(0 == D);
	assert(NULL == prox_ops);
	assert(NULL == ops);
	UNUSED(xupdate_op);

	struct iter_conjgrad_conf* conf = CONTAINER_OF(_conf, struct iter_conjgrad_conf, base);

	float eps = md_norm(1, MD_DIMS(size), image_adj);

	if (checkeps(eps))
		goto cleanup;

	conjgrad(conf->maxiter, conf->l2lambda, eps * conf->tol, size, (void*)normaleq_op, select_vecops(image_adj), operator_iter, image, image_adj, image_truth, obj_eval_data, obj_eval);

cleanup:
	;
}


void iter2_ist(iter_conf* _conf,
		const struct operator_s* normaleq_op,
		unsigned int D,
		const struct operator_p_s* prox_ops[static D],