void spawn_tick_trash(Trash* t, Obj* o){
Uint32 rand_a = rand();
Uint32 rand_b = rand();
tick_new_trash_x += trash_offset(rand_a);
Uint32 new_tick_trash_y = rand_b % GAME_H;
t->pos = vec_make_int(tick_new_trash_x, new_tick_trash_y);
t->vec = vec_make_int(0,0);
// cheap weighted random choice
Uint32 tw = rand_a % (4 + 16 + (DIFFICULTY_SIZE - tick_difficulty));
t->type = (tw < 4) ? TRASH_BIG : (tw < 20 ? TRASH_SMALL : POWER_CELL);
// ok to update tick_trash obj because its off screen before and after
Sint32 x = game_to_screen_x(vec_get_x_int(t->pos), trash_radius(t));
Sint32 y = game_to_screen_y(vec_get_y_int(t->pos), trash_radius(t));
Uint32 index = tick_trash_index(rand_b, t->type);
Uint32 hflip = rand_a % 2 ? OBJ_A1_HFLIP : 0;
Uint32 vflip = rand_b % 2 ? OBJ_A1_VFLIP : 0;
Bool isbig = t->type == TRASH_BIG;
Uint32 size = isbig ? OBJ_A1_SIZE_S_32x32 : OBJ_A1_SIZE_S_16x16;
o->attr0 = obj_a0_build(
y, OBJ_A0_MODE_REG, OBJ_A0_BLEND_NORMAL, 0,
OBJ_A0_8BPP, OBJ_A0_SHAPE_SQUARE
);
o->attr1 = obj_a1_build_reg(x, hflip, vflip, size);
o->attr2 = obj_a2_build(index, 1, 0);
if (obj_offscreen(*o, x, y)){
*o = obj_hide(*o);
}
}
//! Unwind the object text-buffer
void obj_erase(int left, int top, int right, int bottom)
{
TTC *tc= tte_get_context();
int ii=0, nn= tc->dst.pitch;
OBJ_ATTR *obj= (OBJ_ATTR*)tc->dst.data;
for(ii=0; ii<nn; ii++)
obj_hide(obj--);
tc->dst.pitch= 0;
}
/*! \param x x-coordinate in pixels.
* \param y y-coordinate in pixels.
* \param str String indicating which area is used.
*/
void obj_clrs(int x, int y, const char *str)
{
int c;
OBJ_ATTR *obj= (OBJ_ATTR*)gptxt->dst0;
while((c=*str++) != 0)
{
if(c != '\n' && c != ' ')
obj_hide(obj++);
}
}
/*
* Match callback.
* 'obj' is a match contained within the check assembly list.
*/
void *checkass_obj_func(int job, void *jdata, obj_checkass *obj,
mobj_checkass *ca) {
static char buf[80];
obj_cs *cs;
int cs_id;
cs_id = type_to_result(ca->io, REG_TYPE_CONTIGSEL, 0);
cs = result_data(ca->io, cs_id);
switch(job) {
case OBJ_LIST_OPERATIONS:
return "Information\0Hide\0Invoke contig editor *\0"
"SEPARATOR\0Remove\0";
case OBJ_INVOKE_OPERATION:
switch(*((int *)jdata)) {
case 0: /* Information */
vfuncgroup(1, "2D plot matches");
case -1: /* Information from results manager */
start_message();
vmessage("check_assembly match:\n");
vmessage(" From contig %s(#%"PRIrec") at %d\n",
get_contig_name(ca->io, ABS(obj->c1)),
io_clnbr(ca->io, ABS(obj->c1)), obj->pos1);
vmessage(" With contig %s(#%"PRIrec") at %d\n",
get_contig_name(ca->io, ABS(obj->c2)),
io_clnbr(ca->io, ABS(obj->c2)), obj->pos2);
vmessage(" Length %d, mismatch %2.2f%%\n\n",
obj->length, ((float)obj->score)/10000);
end_message(cs->window);
break;
case 1: /* Hide */
obj_hide(GetInterp(), cs->window, obj,
(mobj_repeat *)ca, csplot_hash);
break;
case -2: /* default */
case 2: /* Invoke contig editor */ {
tg_rec cnum, llino;
int pos;
obj->flags |= OBJ_FLAG_VISITED;
ca->current = obj - ca->match;
Tcl_VarEval(GetInterp(), "CSLastUsed ", CPtr2Tcl(ca), NULL);
cnum = abs(obj->c1);
llino = obj->read;
pos = obj->pos1 - io_relpos(ca->io, llino);
if (pos < 1)
pos = 1;
if (pos > ABS(io_length(ca->io, llino)))
pos = ABS(io_length(ca->io, llino));
// if ((id = editor_available(cnum, 1)) != -1) {
// move_editor(id, llino, pos);
// } else {
edit_contig(ca->io, cnum, llino, pos);
// }
break;
}
case 3: /* Remove */
obj_remove(GetInterp(), cs->window, obj,
(mobj_repeat *)ca, csplot_hash);
break;
}
break;
case OBJ_GET_BRIEF:
sprintf(buf,
"check_assembly: #%"PRIrec"@%d len %d, mis %2.2f%%",
obj->read, obj->pos1, obj->length, ((float)obj->score)/10000);
return buf;
}
return NULL;
}
/*
* Match callback.
* 'obj' is a match contained within the 'repeat' list.
*/
void *repeat_obj_func(int job, void *jdata, obj_match *obj,
mobj_repeat *repeat) {
static char buf[80];
obj_cs *cs;
int cs_id;
cs_id = type_to_result(repeat->io, REG_TYPE_CONTIGSEL, 0);
cs = result_data(repeat->io, cs_id, 0);
switch(job) {
case OBJ_LIST_OPERATIONS:
if (io_rdonly(repeat->io) && ((obj->c1 > 0 && obj->c2 < 0) ||
(obj->c1 < 0 && obj->c2 > 0))) {
return "Information\0Hide\0IGNORE\0"
"IGNORE\0SEPARATOR\0Remove\0";
} else {
return "Information\0Hide\0Invoke join editor *\0"
"Invoke contig editors\0SEPARATOR\0Remove\0";
}
case OBJ_INVOKE_OPERATION:
switch(*((int *)jdata)) {
case 0: /* Information */
vfuncgroup(1, "2D plot matches");
case -1: /* Information from results manager */
start_message();
vmessage("Repeat match (%s)\n",
((obj->c1 > 0) == (obj->c2 > 0)) ? "direct" : "inverted");
vmessage(" From contig %s(#%d) at %d\n",
get_contig_name(repeat->io, ABS(obj->c1)),
io_clnbr(repeat->io, ABS(obj->c1)), obj->pos1);
vmessage(" With contig %s(#%d) at %d\n",
get_contig_name(repeat->io, ABS(obj->c2)),
io_clnbr(repeat->io, ABS(obj->c2)), obj->pos2);
vmessage(" Length %d\n\n", obj->length);
end_message(cs->window);
break;
case 1: /* Hide */
obj_hide(GetInterp(), cs->window, obj,
(mobj_repeat *)repeat, csplot_hash);
break;
case -2: /* default */
case 2: /* Invoke join editor */ {
int cnum[2], llino[2], pos[2];
obj->flags |= OBJ_FLAG_VISITED;
repeat->current = obj - repeat->match;
Tcl_VarEval(GetInterp(), "CSLastUsed ", CPtr2Tcl(repeat), NULL);
cnum[0] = ABS(obj->c1);
cnum[1] = ABS(obj->c2);
/* Complement a contig if needed */
if ((obj->c1 > 0) != (obj->c2 > 0)) {
if (cnum[0] == cnum[1]) {
verror(ERR_WARN, "join_editor",
"cannot display the same contig in two "
"different orientations");
break;
}
if (io_rdonly(repeat->io)) {
bell();
break;
}
if (io_clength(repeat->io, ABS(obj->c1)) <
io_clength(repeat->io, ABS(obj->c2))) {
if (-1 == complement_contig(repeat->io, ABS(obj->c1)))
if (-1 == complement_contig(repeat->io, ABS(obj->c2)))
return NULL;
} else {
if (-1 == complement_contig(repeat->io, ABS(obj->c2)))
if (-1 == complement_contig(repeat->io, ABS(obj->c1)))
return NULL;
}
}
/*
* NB: obj->pos1 now may not be the same value as when this
* function was entered, due to the complementing!
*/
pos[0] = obj->pos1;
pos[1] = obj->pos2;
llino[0] = io_clnbr(repeat->io, cnum[0]);
llino[1] = io_clnbr(repeat->io, cnum[1]);
join_contig(GetInterp(), repeat->io, cnum, llino, pos,
consensus_cutoff, quality_cutoff);
break;
}
case 3: /* Invoke contig editors */ {
int cnum, llino, pos;
cnum = ABS(obj->c1);
llino = io_clnbr(repeat->io, cnum);
pos = obj->pos1;
edit_contig(GetInterp(), repeat->io, cnum, llino, pos,
consensus_cutoff, quality_cutoff, 0, NULL);
cnum = ABS(obj->c2);
llino = io_clnbr(repeat->io, cnum);
pos = obj->pos2;
edit_contig(GetInterp(), repeat->io, cnum, llino, pos,
consensus_cutoff, quality_cutoff, 0, NULL);
break;
}
case 4: /* Remove */
obj_remove(GetInterp(), cs->window, obj,
(mobj_repeat *)repeat, csplot_hash);
break;
}
break;
case OBJ_GET_BRIEF:
sprintf(buf, "Repeat: %c#%d@%d with %c#%d@%d, len %d",
obj->c1 > 0 ? '+' : '-',
io_clnbr(repeat->io, ABS(obj->c1)), obj->pos1,
obj->c2 > 0 ? '+' : '-',
io_clnbr(repeat->io, ABS(obj->c2)), obj->pos2,
obj->length);
return buf;
}
return NULL;
}
/*
* functions to act upon matches generated using TAGs
*/
void *find_oligo_obj_func1(int job,
void *jdata,
obj_match *obj,
mobj_find_oligo *find_oligo)
{
static char buf[80];
obj_cs *cs;
int cs_id;
cs_id = type_to_result(find_oligo->io, REG_TYPE_CONTIGSEL, 0);
cs = result_data(find_oligo->io, cs_id);
switch(job) {
case OBJ_LIST_OPERATIONS:
return "Information\0Hide\0Invoke join editor *\0"
"Invoke contig editors\0SEPARATOR\0Remove\0";
case OBJ_INVOKE_OPERATION:
switch(*((int *)jdata)) {
case 0: /* Information */
vfuncgroup(1, "2D plot matches");
case -1: /* Information from results manager */
start_message();
vmessage("Sequence search:\n");
vmessage(" From contig %s(#%"PRIrec") at %d\n",
get_contig_name(find_oligo->io, ABS(obj->c1)),
io_clnbr(find_oligo->io, ABS(obj->c1)), obj->pos1);
vmessage(" With contig %s(#%"PRIrec") at %d\n",
get_contig_name(find_oligo->io, ABS(obj->c2)),
io_clnbr(find_oligo->io, ABS(obj->c2)), obj->pos2);
vmessage(" Length %d, match %2.2f%%\n\n",
obj->length,
(float)obj->score / obj->length * 100.0 );
end_message(cs->window);
break;
case 1: /* Hide */
obj_hide(GetInterp(), cs->window, obj,
(mobj_find_oligo *)find_oligo, csplot_hash);
break;
case -2: /* default */
case 2: /* Invoke join editor */ {
tg_rec cnum[2], llino[2];
int pos[2];
obj->flags |= OBJ_FLAG_VISITED;
find_oligo->current = obj - find_oligo->match;
Tcl_VarEval(GetInterp(), "CSLastUsed ", CPtr2Tcl(find_oligo), NULL);
cnum[0] = ABS(obj->c1);
cnum[1] = ABS(obj->c2);
/* Complement a contig if needed */
if ((obj->c1 > 0) != (obj->c2 > 0)) {
if (cnum[0] == cnum[1]) {
verror(ERR_WARN, "join_editor",
"cannot display the same contig in two "
"different orientations");
break;
}
if (find_oligo->io->read_only) {
bell();
break;
}
if (io_clength(find_oligo->io, ABS(obj->c1)) <
io_clength(find_oligo->io, ABS(obj->c2))) {
if (-1 == complement_contig(find_oligo->io, ABS(obj->c1)))
if (-1 == complement_contig(find_oligo->io,
ABS(obj->c2)))
return NULL;
} else {
if (-1 == complement_contig(find_oligo->io, ABS(obj->c2)))
if (-1 == complement_contig(find_oligo->io,
ABS(obj->c1)))
return NULL;
}
}
/*
* NB: obj->pos1 now may not be the same value as when this
* function was entered, due to the complementing!
*/
pos[0] = obj->pos1;
pos[1] = obj->pos2;
llino[0] = io_clnbr(find_oligo->io, cnum[0]);
llino[1] = io_clnbr(find_oligo->io, cnum[1]);
join_contig(find_oligo->io, cnum, llino, pos);
break;
}
case 3: /* Invoke contig editors */ {
tg_rec cnum, llino;
int pos;
cnum = ABS(obj->c1);
llino = io_clnbr(find_oligo->io, cnum);
pos = obj->pos1;
edit_contig(find_oligo->io, cnum, llino, pos);
cnum = ABS(obj->c2);
llino = io_clnbr(find_oligo->io, cnum);
pos = obj->pos2;
edit_contig(find_oligo->io, cnum, llino, pos);
break;
}
case 4: /* Remove */
obj_remove(GetInterp(), cs->window, obj,
(mobj_find_oligo *)find_oligo, csplot_hash);
break;
}
break;
case OBJ_GET_BRIEF:
sprintf(buf,
"Oligo: %c#%"PRIrec"@%d with %c#%"PRIrec"@%d, "
"len %d, match %2.2f%%",
obj->c1 > 0 ? '+' : '-',
io_clnbr(find_oligo->io, ABS(obj->c1)), obj->pos1,
obj->c2 > 0 ? '+' : '-',
io_clnbr(find_oligo->io, ABS(obj->c2)), obj->pos2,
obj->length, (float)obj->score / obj->length * 100.0);
return buf;
}
return NULL;
}
/*
* functions to act upon matches generated using SEQUENCE
*/
void *find_oligo_obj_func2(int job,
void *jdata,
obj_match *obj,
mobj_find_oligo *find_oligo)
{
static char buf[80];
obj_cs *cs;
int cs_id;
cs_id = type_to_result(find_oligo->io, REG_TYPE_CONTIGSEL, 0);
cs = result_data(find_oligo->io, cs_id);
switch(job) {
case OBJ_LIST_OPERATIONS:
return "Information\0Hide\0Invoke contig editor *\0"
"SEPARATOR\0Remove\0";
case OBJ_INVOKE_OPERATION:
switch(*((int *)jdata)) {
case 0: /* Information */
vfuncgroup(1, "2D plot matches");
case -1: /* Information from results manager */
start_message();
vmessage("Sequence search\n");
vmessage(" Contig %s(#%"PRIrec") at %d\n",
get_contig_name(find_oligo->io, ABS(obj->c1)),
io_clnbr(find_oligo->io, ABS(obj->c1)), obj->pos1);
vmessage(" Length %d, match %2.2f%%\n\n",
obj->length, (float)obj->score / obj->length * 100.0 );
end_message(cs->window);
break;
case 1: /* Hide */
obj_hide(GetInterp(), cs->window, obj,
(mobj_find_oligo *)find_oligo, csplot_hash);
break;
case -2: /* default */
case 2: /* Invoke contig editor */ {
tg_rec cnum, llino;
int pos;
obj->flags |= OBJ_FLAG_VISITED;
find_oligo->current = (int)(obj - find_oligo->match);
cnum = ABS(obj->c1);
llino = 0;
pos = obj->pos1;
/* FIXME
if ((id = editor_available(cnum, 1)) == -1) {
edit_contig(GetInterp(), find_oligo->io, cnum, llino, pos,
consensus_cutoff, quality_cutoff, 0, NULL);
}
if ((id = editor_available(cnum, 1)) != -1) {
move_editor(id, llino, pos);
editor_select_region(id, llino, pos, obj->length);
}
*/
edit_contig(find_oligo->io, cnum, llino, pos);
break;
}
case 3: /* Remove */
obj_remove(GetInterp(), cs->window, obj,
(mobj_find_oligo *)find_oligo, csplot_hash);
break;
}
break;
case OBJ_GET_BRIEF:
sprintf(buf,
"Oligo: %c#%"PRIrec"@%d with %c#%"PRIrec"@%d, "
"len %d, match %2.2f%%",
obj->c1 > 0 ? '+' : '-',
io_clnbr(find_oligo->io, ABS(obj->c1)), obj->pos1,
obj->c2 > 0 ? '+' : '-',
io_clnbr(find_oligo->io, ABS(obj->c2)), obj->pos2,
obj->length, (float)obj->score / obj->length * 100.0);
return buf;
}
return NULL;
}