void parseBp(){
parseA();
string keyOperators[10] = {"gr", ">", "ge", ">=", "ls", "<", "le", "<=", "eq", "ne"};
if(NT == 4000 && find(keyOperators, keyOperators + 10, keyword) != keyOperators + 10){
if(keyword == "gr" || keyword == ">"){
read(keyword);
parseA();
buildTree("gr", 2);
}else if(keyword == "ge" || keyword == ">="){
read(keyword);
parseA();
buildTree("ge", 2);
}else if(keyword == "ls" || keyword == "<"){
read(keyword);
parseA();
buildTree("ls", 2);
}else if(keyword == "le" || keyword == "<="){
read(keyword);
parseA();
buildTree("le", 2);
}else if(keyword == "eq"){
read(keyword);
parseA();
buildTree("eq", 2);
}else if(keyword == "ne"){
read(keyword);
parseA();
buildTree("ne", 2);
}
}
}
void parseIntoAxt(char *lavFile, FILE *f,
char *tNibDir, struct dlList *tCache,
char *qNibDir, struct dlList *qCache)
/* Parse a blastz lav file and put it an axt. */
{
struct lineFile *lf = lineFileOpen(lavFile, TRUE);
char *line;
struct block *blockList = NULL;
boolean isRc = FALSE;
char *tName = NULL, *qName = NULL;
char *matrix = NULL, *command = NULL;
int qSize = 0, tSize = 0;
int score = 0;
/* Check header. */
if (!lineFileNext(lf, &line, NULL))
errAbort("%s is empty", lf->fileName);
if (!startsWith("#:lav", line))
errAbort("%s is not a lav file\n", lf->fileName);
while (lineFileNext(lf, &line, NULL))
{
if (startsWith("s {", line))
{
parseS(lf, &tSize, &qSize);
}
else if (startsWith("h {", line))
{
parseH(lf, &tName, &qName, &isRc);
}
else if (startsWith("d {", line))
{
parseD(lf, &matrix, &command, f);
}
else if (startsWith("a {", line))
{
parseA(lf, &blockList, &score);
if (optionExists("dropSelf"))
{
struct block *bArr[256];
int numBLs = 0, i = 0;
boolean rescore = FALSE;
rescore = breakUpIfOnDiagonal(blockList, isRc, qName, tName,
qSize, tSize, bArr, ArraySize(bArr),
&numBLs);
for (i=0; i < numBLs; i++)
{
outputBlocks(lf, bArr[i], score, f, isRc,
qName, qSize, qNibDir, qCache,
tName, tSize, tNibDir, tCache, rescore);
slFreeList(&bArr[i]);
}
}
else
{
outputBlocks(lf, blockList, score, f, isRc,
qName, qSize, qNibDir, qCache,
tName, tSize, tNibDir, tCache, FALSE);
slFreeList(&blockList);
}
}
}
lineFileClose(&lf);
}
