C++ (Cpp) pslReaderFile示例

示例#1

文件： pslReader.c 项目： blumroy/kentUtils

struct psl *pslReaderLoadFile(char* pslFile, char* chrom)
/* Function that encapsulates reading a psl file */
{

struct pslReader *pr = pslReaderFile(pslFile, chrom);
struct psl *pslList = pslReaderAll(pr);
pslReaderFree(&pr);
return pslList;
}

示例#2

文件： pslLiftSubrangeBlat.c 项目： CEpBrowser/CEpBrowser--from-UCSC-CGI-BIN

static void pslLiftSubrangeBlat(char *inPsl, char *outPsl, char *qSizesFile, char *tSizesFile)
/* pslLiftSubrangeBlat - lift PSLs from blat subrange alignments. */
{
struct hash *qSizes = (qSizesFile != NULL) ? loadSizes(qSizesFile) : NULL;
struct hash *tSizes = (tSizesFile != NULL) ? loadSizes(tSizesFile) : NULL;
struct pslReader *inRd = pslReaderFile(inPsl, NULL);
FILE *outFh = mustOpen(outPsl, "w");
struct psl *psl;
while ((psl = pslReaderNext(inRd)) != NULL)
    {
    liftIt(psl, qSizes, tSizes);
    pslTabOut(psl, outFh);
    pslFree(&psl);
    }
carefulClose(&outFh);
pslReaderFree(&inRd);
}

示例#3

文件： pslReaderTester.c 项目： CEpBrowser/CEpBrowser--from-UCSC-CGI-BIN

void readFile(char *pslFile)
/* Implements the readFile task */
{
FILE *outFh = NULL;
struct pslReader* pr = pslReaderFile(pslFile, gChrom);
struct psl* psl;
int numRows = 0;

if (gOutput != NULL)
    outFh = mustOpen(gOutput, "w");

while ((numRows < gMaxRows) && ((psl = pslReaderNext(pr)) != NULL))
    {
    if (outFh != NULL)
        pslTabOut(psl, outFh);
    pslFree(&psl);
    numRows++;
    }

carefulClose(&outFh);
pslReaderFree(&pr);
checkNumRows(pslFile, numRows);
}