CustomElements::CustomElements(QObject *parent_) :
Avogadro::QtGui::ExtensionPlugin(parent_),
m_molecule(NULL),
m_reassignAction(new QAction(tr("Reassign &Custom Elements..."), this))
{
connect(m_reassignAction, SIGNAL(triggered()), SLOT(reassign()));
updateReassignAction();
}
void kd_tree::descend(int root){
if(tree[root][1]>=0)descend(tree[root][1]);
if(tree[root][2]>=0)descend(tree[root][2]);
reassign(root);
}
void kd_tree::descend(int root){
/*
For use when removing a node from the tree.
Wander down the specified branch until you find a terminal node.
Reassign that terminal node to the new tree.
*/
if(tree.get_data(root,1)>=0)descend(tree.get_data(root,1));
if(tree.get_data(root,2)>=0)descend(tree.get_data(root,2));
reassign(root);
}
void breakKey(string str)
{
int index=0;
string command;
string name;
string tt;
string s;
name.clear();
//Reading the command name
for(int i=0;i<(int)str.length();i++)
{
if(str[i]==' ')
{
index=i;
break;
}
command.push_back(str[i]);
}
if(command.compare("store")==0)
{
nextisget=0;
for(int i=index+1;i<(int)str.length();i++)
{
if(str[i]==' ')
{
index=i;
break;
}
name.push_back(str[i]);
}
for(int i=index+1;i<(int)str.length();i++)
{
if(str[i]==' ')
{
index=i;
break;
}
tt.push_back(str[i]);
}
//Splitting all the strings
for(int i=index+1;i<(int)str.length();i++)
{
if(str[i]=='='||str[i]==' ')
{
std::transform(s.begin(),s.end(),s.begin(),::tolower);
keywords.push_back(s);
s.clear();
continue;
}
if(str[i]!='\"')
s.push_back(str[i]);
else
{
if(i==((int)str.length()-1))
{
std::transform(s.begin(),s.end(),s.begin(),::tolower);
keywords.push_back(s);
s.clear();
}
}
}
store(name,atoi(tt.c_str()),keywords);
//display();
}
else
if(command.compare("search")==0)
{
localsearchbuffer.clear();
string type;
string content;
vector<string> v;
vector<searchresponse> j;
vector<string> fd;
vector<string> md;
/*---------Reading the type of the file---------------*/
for(int i=index+1;i<(int)str.length();i++)
{
if(str[i]=='=')
{
index=i;
break;
}
type.push_back(str[i]);
}
/*----------------------------------------------------*/
for(int i=index+1;i<(int)str.length();i++)
{
content.push_back(str[i]);
}
if(type.compare("filename")==0)
{
v.push_back(content);
j=searchProc(v,0);
search(0,v);
}
if(type.compare("sha1hash")==0)
{
char ab[40];
string snd;
reassign(ab,content);
unsigned char shg[20];
stripIndex(ab,shg);
snd=assign(shg);
v.push_back(snd);
j=searchProc(v,1);
search(1,v);
}
if(type.compare("keywords")==0)
{
int nospace=1;
for(int i=index+1;i<(int)str.length();i++)
{
if(str[i]=='\"'&&i==(index+1))
continue;
if(str[i]==' '||str[i]=='\"')
{
v.push_back(s);
s.clear();
nospace=0;
continue;
}
s.push_back(str[i]);
}
if(nospace)
{
v.push_back(s);
}
j=searchProc(v,2);
search(2,v);
/*for(int i=0;i<(int)v.size();i++)
cout<<v[i]<<endl;*/
}
for(int i=0;i<(int)j.size();i++)
{
md.push_back(j[i].fileid);
fd.push_back(j[i].mdata);
}
searchResponse(md,fd);
int sid=1;
while(search_flag)
{
pthread_mutex_lock(&globalbufferlock);
if(globalsearchbuffer.size()==0)
{
pthread_mutex_unlock(&globalbufferlock);
//cout<<"sleeping"<<endl;
sleep(1);
continue;
}
for(int i=0;i<(int)globalsearchbuffer.size();i++)
{
localsearchbuffer.push_back(globalsearchbuffer[i]);
displaySearchResponse(globalsearchbuffer[i],sid);
sid++;
}
globalsearchbuffer.clear();
pthread_mutex_unlock(&globalbufferlock);
}
search_flag=1;
nextisget=1;
}
else if(command.compare("get")==0)
{
if(nextisget)
{
string no;
int ino;
int extfile_flag=0;
getres gs;
getExtFile.clear();
/*---------Reading the type of the file---------------*/
for(int i=index+1;i<(int)str.length();i++)
{
if(str[i]==' ')
{
index=i;
extfile_flag=1;
break;
}
no.push_back(str[i]);
}
/*----------------------------------------------------*/
string nameoffile;
if(extfile_flag==1)
{
for(int i=index+1;i<(int)str.length();i++)
{
nameoffile.push_back(str[i]);
}
}
ino=atoi(no.c_str());
if(localsearchbuffer.size()!=0)
{
gs=localsearchbuffer[ino-1];
}
if(extfile_flag)
{
getExtFile.assign(nameoffile);
//cout<<nameoffile<<"Sdsd"<<endl;
if(fileExistsInCurr(nameoffile))
{
string dec;
cout<<"THE FILE EXISTS...SHOULD WE OVERWRITE THE FILE(yes/no)\n";
cin>>dec;
bug=1;
if(dec[0]=='y'||dec[0]=='Y')
{
//cout<<"he is asking us to rewrite the file";
get_UI(gs.fileid,gs.sha1);
}
else
{
cout<<"FILE RETRY FAILED\n";
}
}
else
{
//cout<<"Calling get"<<endl;
get_UI(gs.fileid,gs.sha1);
}
}
else
{
getExtFile.assign(gs.filename);
if(fileExistsInCurr(gs.filename))
{
string dec;
cout<<"THE FILE EXISTS...SHOULD WE OVERWRITE THE FILE(yes/no)";
cin>>dec;
bug=1;
if(dec[0]=='y'||dec[0]=='Y')
{
get_UI(gs.fileid,gs.sha1);
}
else
{
cout<<"RETRY FAILED"<<endl;
}
}
else
{
