/* =============================================================================
* main
* =============================================================================
*/
MAIN(argc, argv)
{
GOTO_REAL();
/*
* Initialization
*/
parseArgs(argc, (char** const)argv);
long numThread = global_params[PARAM_THREAD];
SIM_GET_NUM_CPU(numThread);
TM_STARTUP(numThread);
P_MEMORY_STARTUP(numThread);
thread_startup(numThread);
maze_t* mazePtr = maze_alloc();
assert(mazePtr);
long numPathToRoute = maze_read(mazePtr, global_inputFile);
router_t* routerPtr = router_alloc(global_params[PARAM_XCOST],
global_params[PARAM_YCOST],
global_params[PARAM_ZCOST],
global_params[PARAM_BENDCOST]);
assert(routerPtr);
list_t* pathVectorListPtr = list_alloc(NULL);
assert(pathVectorListPtr);
/*
* Run transactions
*/
router_solve_arg_t routerArg = {routerPtr, mazePtr, pathVectorListPtr};
TIMER_T startTime;
TIMER_READ(startTime);
GOTO_SIM();
#ifdef OTM
#pragma omp parallel
{
router_solve((void *)&routerArg);
}
#else
thread_start(router_solve, (void*)&routerArg);
#endif
GOTO_REAL();
TIMER_T stopTime;
TIMER_READ(stopTime);
long numPathRouted = 0;
list_iter_t it;
list_iter_reset(&it, pathVectorListPtr);
while (list_iter_hasNext(&it, pathVectorListPtr)) {
vector_t* pathVectorPtr = (vector_t*)list_iter_next(&it, pathVectorListPtr);
numPathRouted += vector_getSize(pathVectorPtr);
}
printf("Paths routed = %li\n", numPathRouted);
printf("Elapsed time = %f seconds\n", TIMER_DIFF_SECONDS(startTime, stopTime));
/*
* Check solution and clean up
*/
assert(numPathRouted <= numPathToRoute);
bool_t status = maze_checkPaths(mazePtr, pathVectorListPtr, global_doPrint);
assert(status == TRUE);
puts("Verification passed.");
maze_free(mazePtr);
router_free(routerPtr);
TM_SHUTDOWN();
P_MEMORY_SHUTDOWN();
GOTO_SIM();
thread_shutdown();
MAIN_RETURN(0);
}
/* =============================================================================
* main
* =============================================================================
*/
MAIN(argc, argv)
{
/*
* Initialization
*/
parseArgs(argc, (char** const)argv);
long numThread = global_params[PARAM_THREAD];
SIM_GET_NUM_CPU(numThread);
TM_STARTUP(numThread);
P_MEMORY_STARTUP(numThread);
thread_startup(numThread);
maze_t* mazePtr = maze_alloc();
assert(mazePtr);
long numPathToRoute = maze_read(mazePtr, global_inputFile);
router_t* routerPtr = router_alloc(global_params[PARAM_XCOST],
global_params[PARAM_YCOST],
global_params[PARAM_ZCOST],
global_params[PARAM_BENDCOST]);
assert(routerPtr);
list_t* pathVectorListPtr = list_alloc(NULL);
assert(pathVectorListPtr);
/*
* Run transactions
*/
router_solve_arg_t routerArg = {routerPtr, mazePtr, pathVectorListPtr};
// NB: Since ASF/PTLSim "REAL" is native execution, and since we are using
// wallclock time, we want to be sure we read time inside the
// simulator, or else we report native cycles spent on the benchmark
// instead of simulator cycles.
GOTO_SIM();
TIMER_T startTime;
TIMER_READ(startTime);
#ifdef OTM
#pragma omp parallel
{
router_solve((void *)&routerArg);
}
#else
thread_start(router_solve, (void*)&routerArg);
#endif
TIMER_T stopTime;
TIMER_READ(stopTime);
// NB: As above, timer reads must be done inside of the simulated region
// for PTLSim/ASF
GOTO_REAL();
long numPathRouted = 0;
list_iter_t it;
list_iter_reset(&it, pathVectorListPtr);
while (list_iter_hasNext(&it, pathVectorListPtr)) {
vector_t* pathVectorPtr = (vector_t*)list_iter_next(&it, pathVectorListPtr);
numPathRouted += vector_getSize(pathVectorPtr);
}
printf("Paths routed = %li\n", numPathRouted);
printf("Elapsed time = %f seconds\n", TIMER_DIFF_SECONDS(startTime, stopTime));
/*
* Check solution and clean up
*/
assert(numPathRouted <= numPathToRoute);
bool status = maze_checkPaths(mazePtr, pathVectorListPtr, global_doPrint);
assert(status);
puts("Verification passed.");
maze_free(mazePtr);
router_free(routerPtr);
TM_SHUTDOWN();
P_MEMORY_SHUTDOWN();
thread_shutdown();
MAIN_RETURN(0);
}
/* =============================================================================
* main
* =============================================================================
*/
MAIN(argc, argv)
{
int max_nclusters = 13;
int min_nclusters = 4;
char* filename = 0;
float* buf;
float** attributes;
float** cluster_centres = NULL;
int i;
int j;
int best_nclusters;
int* cluster_assign;
int numAttributes;
int numObjects;
int use_zscore_transform = 1;
char* line;
int isBinaryFile = 0;
int nloops;
int len;
int nthreads;
float threshold = 0.001;
int opt;
GOTO_REAL();
line = (char*)malloc(MAX_LINE_LENGTH); /* reserve memory line */
nthreads = 1;
while ((opt = getopt(argc,(char**)argv,"p:i:m:n:t:bz")) != EOF) {
switch (opt) {
case 'i': filename = optarg;
break;
case 'b': isBinaryFile = 1;
break;
case 't': threshold = atof(optarg);
break;
case 'm': max_nclusters = atoi(optarg);
break;
case 'n': min_nclusters = atoi(optarg);
break;
case 'z': use_zscore_transform = 0;
break;
case 'p': nthreads = atoi(optarg);
break;
case '?': usage((char*)argv[0]);
break;
default: usage((char*)argv[0]);
break;
}
}
if (filename == 0) {
usage((char*)argv[0]);
}
if (max_nclusters < min_nclusters) {
fprintf(stderr, "Error: max_clusters must be >= min_clusters\n");
usage((char*)argv[0]);
}
SIM_GET_NUM_CPU(nthreads);
numAttributes = 0;
numObjects = 0;
/*
* From the input file, get the numAttributes and numObjects
*/
if (isBinaryFile) {
int infile;
if ((infile = open(filename, O_RDONLY, "0600")) == -1) {
fprintf(stderr, "Error: no such file (%s)\n", filename);
exit(1);
}
read(infile, &numObjects, sizeof(int));
read(infile, &numAttributes, sizeof(int));
/* Allocate space for attributes[] and read attributes of all objects */
buf = (float*)malloc(numObjects * numAttributes * sizeof(float));
assert(buf);
attributes = (float**)malloc(numObjects * sizeof(float*));
assert(attributes);
attributes[0] = (float*)malloc(numObjects * numAttributes * sizeof(float));
assert(attributes[0]);
for (i = 1; i < numObjects; i++) {
attributes[i] = attributes[i-1] + numAttributes;
}
read(infile, buf, (numObjects * numAttributes * sizeof(float)));
close(infile);
} else {
FILE *infile;
if ((infile = fopen(filename, "r")) == NULL) {
fprintf(stderr, "Error: no such file (%s)\n", filename);
exit(1);
}
while (fgets(line, MAX_LINE_LENGTH, infile) != NULL) {
if (strtok(line, " \t\n") != 0) {
numObjects++;
}
}
rewind(infile);
while (fgets(line, MAX_LINE_LENGTH, infile) != NULL) {
if (strtok(line, " \t\n") != 0) {
/* Ignore the id (first attribute): numAttributes = 1; */
while (strtok(NULL, " ,\t\n") != NULL) {
numAttributes++;
}
break;
}
}
/* Allocate space for attributes[] and read attributes of all objects */
buf = (float*)malloc(numObjects * numAttributes * sizeof(float));
assert(buf);
attributes = (float**)malloc(numObjects * sizeof(float*));
assert(attributes);
attributes[0] = (float*)malloc(numObjects * numAttributes * sizeof(float));
assert(attributes[0]);
for (i = 1; i < numObjects; i++) {
attributes[i] = attributes[i-1] + numAttributes;
}
rewind(infile);
i = 0;
while (fgets(line, MAX_LINE_LENGTH, infile) != NULL) {
if (strtok(line, " \t\n") == NULL) {
continue;
}
for (j = 0; j < numAttributes; j++) {
buf[i] = atof(strtok(NULL, " ,\t\n"));
i++;
}
}
fclose(infile);
}
TM_STARTUP(nthreads);
thread_startup(nthreads);
/*
* The core of the clustering
*/
cluster_assign = (int*)malloc(numObjects * sizeof(int));
assert(cluster_assign);
nloops = 1;
len = max_nclusters - min_nclusters + 1;
#ifdef STM_ENERGY_MONITOR
startEnergy();
#endif /* STM_ENERGY_MONITOR */
for (i = 0; i < nloops; i++) {
/*
* Since zscore transform may perform in cluster() which modifies the
* contents of attributes[][], we need to re-store the originals
*/
memcpy(attributes[0], buf, (numObjects * numAttributes * sizeof(float)));
cluster_centres = NULL;
cluster_exec(nthreads,
numObjects,
numAttributes,
attributes, /* [numObjects][numAttributes] */
use_zscore_transform, /* 0 or 1 */
min_nclusters, /* pre-define range from min to max */
max_nclusters,
threshold,
&best_nclusters, /* return: number between min and max */
&cluster_centres, /* return: [best_nclusters][numAttributes] */
cluster_assign); /* return: [numObjects] cluster id for each object */
}
#ifdef GNUPLOT_OUTPUT
{
FILE** fptr;
char outFileName[1024];
fptr = (FILE**)malloc(best_nclusters * sizeof(FILE*));
for (i = 0; i < best_nclusters; i++) {
sprintf(outFileName, "group.%d", i);
fptr[i] = fopen(outFileName, "w");
}
for (i = 0; i < numObjects; i++) {
fprintf(fptr[cluster_assign[i]],
"%6.4f %6.4f\n",
attributes[i][0],
attributes[i][1]);
}
for (i = 0; i < best_nclusters; i++) {
fclose(fptr[i]);
}
free(fptr);
}
#endif /* GNUPLOT_OUTPUT */
#ifdef OUTPUT_TO_FILE
{
/* Output: the coordinates of the cluster centres */
FILE* cluster_centre_file;
FILE* clustering_file;
char outFileName[1024];
sprintf(outFileName, "%s.cluster_centres", filename);
cluster_centre_file = fopen(outFileName, "w");
for (i = 0; i < best_nclusters; i++) {
fprintf(cluster_centre_file, "%d ", i);
for (j = 0; j < numAttributes; j++) {
fprintf(cluster_centre_file, "%f ", cluster_centres[i][j]);
}
fprintf(cluster_centre_file, "\n");
}
fclose(cluster_centre_file);
/* Output: the closest cluster centre to each of the data points */
sprintf(outFileName, "%s.cluster_assign", filename);
clustering_file = fopen(outFileName, "w");
for (i = 0; i < numObjects; i++) {
fprintf(clustering_file, "%d %d\n", i, cluster_assign[i]);
}
fclose(clustering_file);
}
#endif /* OUTPUT TO_FILE */
#ifdef OUTPUT_TO_STDOUT
{
/* Output: the coordinates of the cluster centres */
for (i = 0; i < best_nclusters; i++) {
//printf("%d ", i);
for (j = 0; j < numAttributes; j++) {
//printf("%f ", cluster_centres[i][j]);
}
//printf("\n");
}
}
#endif /* OUTPUT TO_STDOUT */
#ifdef STM_ENERGY_MONITOR
float joule=endEnergy();
printf("Threads: %i\tElapsed time: %f Energy: %f",nthreads, global_time, joule);
#else
printf("Threads: %i\tElapsed time: %f", nthreads, global_time);
#endif /* STM_ENERGY_MONITOR */
free(cluster_assign);
free(attributes);
free(cluster_centres[0]);
free(cluster_centres);
free(buf);
TM_SHUTDOWN();
if (getenv("STM_STATS") != NULL) {
unsigned long u;
if (stm_get_global_stats("global_nb_commits", &u) != 0){
printf("\tThroughput: %f\n",u/global_time);
}
}
GOTO_SIM();
thread_shutdown();
MAIN_RETURN(0);
}
int main(int argc, char **argv)
{
char logpath[FILENAME_MAX];
int log;
if (argc != 2)
{
fprintf(stderr, PACKAGE_STRING "\n"
" (c) Copyright 2001-2004 The IceS Development Team <*****@*****.**>\n"
" Michael Smith <*****@*****.**>\n"
" Karl Heyes <*****@*****.**>\n"
" and others\n"
"\n"
"Usage: \"ices config.xml\"\n");
return 1;
}
config_initialize();
if (config_read(argv[1]) <= 0)
{
fprintf(stderr, "Failed to read config file \"%s\"\n", argv[1]);
goto fail;
}
if (ices_config->background)
{
#ifndef _WIN32
int ret = 0;
/* Start up new session, to lose old session and process group */
switch (fork())
{
case 0: break; /* child continues */
case -1: perror ("fork"); ret = -1;
default:
exit (ret);
}
/* Disassociate process group and controlling terminal */
setsid();
/* Become a NON-session leader so that a */
/* control terminal can't be reacquired */
switch (fork())
{
case 0: break; /* child continues */
case -1: perror ("fork"); ret = -1;
default:
exit (ret);
}
#else
FreeConsole();
#endif
}
log_initialize();
thread_initialize();
shout_init();
encode_init();
#ifndef _WIN32
signals_setup();
#endif
snprintf(logpath, FILENAME_MAX, "%s/%s", ices_config->logpath,
ices_config->logfile);
if(ices_config->log_stderr)
log = log_open_file(stderr);
else
{
log = log_open(logpath);
if (log < 0)
fprintf (stderr, "unable to open log %s\n", logpath);
log_set_trigger (log, ices_config->logsize);
}
/* Set the log level, if requested - defaults to 2 (WARN) otherwise */
if (ices_config->loglevel)
log_set_level(log, ices_config->loglevel);
ices_config->log_id = log;
LOG_INFO0(PACKAGE_STRING " started...");
if (ices_config->pidfile != NULL)
{
FILE *f = fopen (ices_config->pidfile, "w");
if (f)
{
fprintf (f, "%i", getpid());
fclose (f);
}
else
{
LOG_WARN1("pidfile \"%s\" cannot be written to", ices_config->pidfile);
xmlFree (ices_config->pidfile);
ices_config->pidfile = NULL;
}
}
/* Start the core streaming loop */
input_loop();
if (ices_config->pidfile)
remove (ices_config->pidfile);
LOG_INFO0("Shutdown complete");
log_close(log);
fail:
encode_close();
shout_shutdown();
config_shutdown();
thread_shutdown();
log_shutdown();
return 0;
}
/* =============================================================================
* main
* =============================================================================
*/
int main (int argc, char** argv)
{
int result = 0;
TIMER_T start;
TIMER_T stop;
/* Initialization */
parseArgs(argc, (char** const)argv);
printf("Creating gene and segments... ");
fflush(stdout);
long geneLength = global_params[PARAM_GENE];
long segmentLength = global_params[PARAM_SEGMENT];
long minNumSegment = global_params[PARAM_NUMBER];
long numThread = global_params[PARAM_THREAD];
thread_startup(numThread);
random_t* randomPtr = random_alloc();
assert(randomPtr != NULL);
random_seed(randomPtr, 0);
gene_t* genePtr = gene_alloc(geneLength);
assert( genePtr != NULL);
gene_create(genePtr, randomPtr);
char* gene = genePtr->contents;
segments_t* segmentsPtr = segments_alloc(segmentLength, minNumSegment);
assert(segmentsPtr != NULL);
segments_create(segmentsPtr, genePtr, randomPtr);
sequencer_t* sequencerPtr = sequencer_alloc(geneLength, segmentLength, segmentsPtr);
assert(sequencerPtr != NULL);
puts("done.");
printf("Gene length = %li\n", genePtr->length);
printf("Segment length = %li\n", segmentsPtr->length);
printf("Number segments = %li\n", vector_getSize(segmentsPtr->contentsPtr));
fflush(stdout);
/* Benchmark */
printf("Sequencing gene... ");
fflush(stdout);
TIMER_READ(start);
#ifdef OTM
#pragma omp parallel
{
sequencer_run(sequencerPtr);
}
#else
thread_start(sequencer_run, (void*)sequencerPtr);
#endif
TIMER_READ(stop);
puts("done.");
printf("Time = %lf\n", TIMER_DIFF_SECONDS(start, stop));
fflush(stdout);
/* Check result */
{
char* sequence = sequencerPtr->sequence;
result = strcmp(gene, sequence);
printf("Sequence matches gene: %s\n", (result ? "no" : "yes"));
if (result) {
printf("gene = %s\n", gene);
printf("sequence = %s\n", sequence);
}
fflush(stdout);
assert(strlen(sequence) >= strlen(gene));
}
/* Clean up */
printf("Deallocating memory... ");
fflush(stdout);
sequencer_free(sequencerPtr);
segments_free(segmentsPtr);
gene_free(genePtr);
random_free(randomPtr);
puts("done.");
fflush(stdout);
thread_shutdown();
return result;
}
/* =============================================================================
* main
* =============================================================================
*/
MAIN (argc,argv)
{
TIMER_T start;
TIMER_T stop;
GOTO_REAL();
/* Initialization */
parseArgs(argc, (char** const)argv);
SIM_GET_NUM_CPU(global_params[PARAM_THREAD]);
printf("Creating gene and segments... ");
fflush(stdout);
long geneLength = global_params[PARAM_GENE];
long segmentLength = global_params[PARAM_SEGMENT];
long minNumSegment = global_params[PARAM_NUMBER];
long numThread = global_params[PARAM_THREAD];
TM_STARTUP(numThread);
P_MEMORY_STARTUP(numThread);
random_t* randomPtr = random_alloc();
assert(randomPtr != NULL);
random_seed(randomPtr, 0);
gene_t* genePtr = gene_alloc(geneLength);
assert( genePtr != NULL);
gene_create(genePtr, randomPtr);
char* gene = genePtr->contents;
segments_t* segmentsPtr = segments_alloc(segmentLength, minNumSegment);
assert(segmentsPtr != NULL);
segments_create(segmentsPtr, genePtr, randomPtr);
sequencer_t* sequencerPtr = sequencer_alloc(geneLength, segmentLength, segmentsPtr);
assert(sequencerPtr != NULL);
puts("done.");
printf("Gene length = %li\n", genePtr->length);
printf("Segment length = %li\n", segmentsPtr->length);
printf("Number segments = %li\n", vector_getSize(segmentsPtr->contentsPtr));
fflush(stdout);
/* Benchmark */
printf("Sequencing gene... ");
fflush(stdout);
TIMER_READ(start);
GOTO_SIM();
thread_startup(numThread, sequencer_run, (void*)sequencerPtr);
thread_start();
GOTO_REAL();
TIMER_READ(stop);
puts("done.");
printf("Time = %lf\n", TIMER_DIFF_SECONDS(start, stop));
fflush(stdout);
/* Check result */
{
char* sequence = sequencerPtr->sequence;
int result = strcmp(gene, sequence);
printf("Sequence matches gene: %s\n", (result ? "no" : "yes"));
if (result) {
printf("gene = %s\n", gene);
printf("sequence = %s\n", sequence);
}
fflush(stdout);
assert(strlen(sequence) >= strlen(gene));
}
/* Clean up */
printf("Deallocating memory... ");
fflush(stdout);
sequencer_free(sequencerPtr);
segments_free(segmentsPtr);
gene_free(genePtr);
random_free(randomPtr);
puts("done.");
fflush(stdout);
al_dump(&sequencerLock);
TM_SHUTDOWN();
P_MEMORY_SHUTDOWN();
GOTO_SIM();
thread_shutdown();
MAIN_RETURN(0);
}
/* =============================================================================
* main
* =============================================================================
*/
MAIN(argc, argv)
{
char exitmsg[1024];
GOTO_REAL();
load_syncchar_map("sync_char.map.yada");
/*
* Initialization
*/
parseArgs(argc, (char** const)argv);
sprintf(exitmsg, "END BENCHMARK %s-parallel-phase\n", argv[0]);
SIM_GET_NUM_CPU(global_numThread);
TM_STARTUP(global_numThread);
P_MEMORY_STARTUP(global_numThread);
thread_startup(global_numThread);
global_meshPtr = mesh_alloc();
assert(global_meshPtr);
printf("Angle constraint = %lf\n", global_angleConstraint);
printf("Reading input... ");
long initNumElement = mesh_read(global_meshPtr, global_inputPrefix);
puts("done.");
global_workHeapPtr = heap_alloc(1, &element_heapCompare);
assert(global_workHeapPtr);
long initNumBadElement = initializeWork(global_workHeapPtr, global_meshPtr);
printf("Initial number of mesh elements = %li\n", initNumElement);
printf("Initial number of bad elements = %li\n", initNumBadElement);
printf("Starting triangulation...");
fflush(stdout);
/*
* Run benchmark
*/
TIMER_T start;
TIMER_READ(start);
OSA_PRINT("entering parallel phase\n",0);
START_INSTRUMENTATION();
GOTO_SIM();
#ifdef OTM
#pragma omp parallel
{
process();
}
#else
thread_start(process, NULL);
#endif
GOTO_REAL();
OSA_PRINT("exiting parallel phase\n",0);
OSA_PRINT(exitmsg,0);
STOP_INSTRUMENTATION();
TIMER_T stop;
TIMER_READ(stop)
puts(" done.");
printf("Elapsed time = %0.3lf\n",
TIMER_DIFF_SECONDS(start, stop));
fflush(stdout);
/*
* Check solution
*/
long finalNumElement = initNumElement + global_totalNumAdded;
printf("Final mesh size = %li\n", finalNumElement);
printf("Number of elements processed = %li\n", global_numProcess);
fflush(stdout);
#if 0
bool_t isSuccess = mesh_check(global_meshPtr, finalNumElement);
#else
bool_t isSuccess = TRUE;
#endif
printf("Final mesh is %s\n", (isSuccess ? "valid." : "INVALID!"));
fflush(stdout);
assert(isSuccess);
/*
* TODO: deallocate mesh and work heap
*/
TM_SHUTDOWN();
P_MEMORY_SHUTDOWN();
GOTO_SIM();
thread_shutdown();
MAIN_RETURN(0);
}
MAIN(argc, argv)
{
GOTO_REAL();
SETUP_NUMBER_TASKS(10);
/*
* Tuple for Scalable Data Generation
* stores startVertex, endVertex, long weight and other info
*/
graphSDG* SDGdata;
/*
* The graph data structure for this benchmark - see defs.h
*/
graph* G;
#ifdef ENABLE_KERNEL2
/*
* Kernel 2
*/
edge* maxIntWtList;
edge* soughtStrWtList;
long maxIntWtListSize;
long soughtStrWtListSize;
#endif /* ENABLE_KERNEL2 */
#ifdef ENABLE_KERNEL3
# ifndef ENABLE_KERNEL2
# error KERNEL3 requires KERNEL2
# endif
/*
* Kernel 3
*/
V* intWtVList = NULL;
V* strWtVList = NULL;
Vl** intWtVLList = NULL;
Vl** strWtVLList = NULL;
Vd* intWtVDList = NULL;
Vd* strWtVDList = NULL;
#endif /* ENABLE_KERNEL3 */
double totalTime = 0.0;
/* -------------------------------------------------------------------------
* Preamble
* -------------------------------------------------------------------------
*/
/*
* User Interface: Configurable parameters, and global program control
*/
getUserParameters(argc, (char** const) argv);
SIM_GET_NUM_CPU(THREADS);
TM_STARTUP(THREADS, 0);
P_MEMORY_STARTUP(THREADS);
SETUP_NUMBER_THREADS(THREADS);
thread_startup(THREADS);
double time_total = 0.0;
int repeat = REPEATS;
for (; repeat > 0; --repeat) {
SDGdata = (graphSDG*)malloc(sizeof(graphSDG));
assert(SDGdata);
genScalData_seq(SDGdata);
G = (graph*)malloc(sizeof(graph));
assert(G);
computeGraph_arg_t computeGraphArgs;
computeGraphArgs.GPtr = G;
computeGraphArgs.SDGdataPtr = SDGdata;
TIMER_T start;
TIMER_READ(start);
GOTO_SIM();
thread_start(computeGraph, (void*)&computeGraphArgs);
GOTO_REAL();
TIMER_T stop;
TIMER_READ(stop);
double time_tmp = TIMER_DIFF_SECONDS(start, stop);
PRINT_STATS();
time_total += time_tmp;
}
totalTime += time_total;
#ifdef ENABLE_KERNEL2
/* -------------------------------------------------------------------------
* Kernel 2 - Find Max weight and sought string
* -------------------------------------------------------------------------
*/
printf("\nKernel 2 - getStartLists() beginning execution...\n");
maxIntWtListSize = 0;
soughtStrWtListSize = 0;
maxIntWtList = (edge*)malloc(sizeof(edge));
assert(maxIntWtList);
soughtStrWtList = (edge*)malloc(sizeof(edge));
assert(soughtStrWtList);
getStartLists_arg_t getStartListsArg;
getStartListsArg.GPtr = G;
getStartListsArg.maxIntWtListPtr = &maxIntWtList;
getStartListsArg.maxIntWtListSize = &maxIntWtListSize;
getStartListsArg.soughtStrWtListPtr = &soughtStrWtList;
getStartListsArg.soughtStrWtListSize = &soughtStrWtListSize;
TIMER_READ(start);
GOTO_SIM();
#ifdef OTM
#pragma omp parallel
{
getStartLists((void*)&getStartListsArg);
}
#else
thread_start(getStartLists, (void*)&getStartListsArg);
#endif
GOTO_REAL();
TIMER_T stop;
TIMER_READ(stop);
time = TIMER_DIFF_SECONDS(start, stop);
totalTime += time;
printf("\n\tgetStartLists() completed execution.\n");
printf("\nTime taken for kernel 2 is %9.6f sec.\n\n", time);
#endif /* ENABLE_KERNEL2 */
#ifdef ENABLE_KERNEL3
/* -------------------------------------------------------------------------
* Kernel 3 - Graph Extraction
* -------------------------------------------------------------------------
*/
printf("\nKernel 3 - findSubGraphs() beginning execution...\n");
if (K3_DS == 0) {
intWtVList = (V*)malloc(G->numVertices * maxIntWtListSize * sizeof(V));
assert(intWtVList);
strWtVList = (V*)malloc(G->numVertices * soughtStrWtListSize * sizeof(V));
assert(strWtVList);
findSubGraphs0_arg_t findSubGraphs0Arg;
findSubGraphs0Arg.GPtr = G;
findSubGraphs0Arg.intWtVList = intWtVList;
findSubGraphs0Arg.strWtVList = strWtVList;
findSubGraphs0Arg.maxIntWtList = maxIntWtList;
findSubGraphs0Arg.maxIntWtListSize = maxIntWtListSize;
findSubGraphs0Arg.soughtStrWtList = soughtStrWtList;
findSubGraphs0Arg.soughtStrWtListSize = soughtStrWtListSize;
TIMER_READ(start);
GOTO_SIM();
#ifdef OTM
#pragma omp parallel
{
findSubGraphs0((void*)&findSubGraphs0Arg);
}
#else
thread_start(findSubGraphs0, (void*)&findSubGraphs0Arg);
#endif
GOTO_REAL();
TIMER_READ(stop);
} else if (K3_DS == 1) {
intWtVLList = (Vl**)malloc(maxIntWtListSize * sizeof(Vl*));
assert(intWtVLList);
strWtVLList = (Vl**)malloc(soughtStrWtListSize * sizeof(Vl*));
assert(strWtVLList);
findSubGraphs1_arg_t findSubGraphs1Arg;
findSubGraphs1Arg.GPtr = G;
findSubGraphs1Arg.intWtVLList = intWtVLList;
findSubGraphs1Arg.strWtVLList = strWtVLList;
findSubGraphs1Arg.maxIntWtList = maxIntWtList;
findSubGraphs1Arg.maxIntWtListSize = maxIntWtListSize;
findSubGraphs1Arg.soughtStrWtList = soughtStrWtList;
findSubGraphs1Arg.soughtStrWtListSize = soughtStrWtListSize;
TIMER_READ(start);
GOTO_SIM();
#ifdef OTM
#pragma omp parallel
{
findSubGraphs1((void*)&findSubGraphs1Arg);
}
#else
thread_start(findSubGraphs1, (void*)&findSubGraphs1Arg);
#endif
GOTO_REAL();
TIMER_READ(stop);
/* Verification
on_one_thread {
for (i=0; i<maxIntWtListSize; i++) {
printf("%ld -- ", i);
currV = intWtVLList[i];
while (currV != NULL) {
printf("[%ld %ld] ", currV->num, currV->depth);
currV = currV->next;
}
printf("\n");
}
for (i=0; i<soughtStrWtListSize; i++) {
printf("%ld -- ", i);
currV = strWtVLList[i];
while (currV != NULL) {
printf("[%ld %ld] ", currV->num, currV->depth);
currV = currV->next;
}
printf("\n");
}
}
*/
} else if (K3_DS == 2) {
intWtVDList = (Vd *) malloc(maxIntWtListSize * sizeof(Vd));
assert(intWtVDList);
strWtVDList = (Vd *) malloc(soughtStrWtListSize * sizeof(Vd));
assert(strWtVDList);
findSubGraphs2_arg_t findSubGraphs2Arg;
findSubGraphs2Arg.GPtr = G;
findSubGraphs2Arg.intWtVDList = intWtVDList;
findSubGraphs2Arg.strWtVDList = strWtVDList;
findSubGraphs2Arg.maxIntWtList = maxIntWtList;
findSubGraphs2Arg.maxIntWtListSize = maxIntWtListSize;
findSubGraphs2Arg.soughtStrWtList = soughtStrWtList;
findSubGraphs2Arg.soughtStrWtListSize = soughtStrWtListSize;
TIMER_READ(start);
GOTO_SIM();
#ifdef OTM
#pragma omp parallel
{
findSubGraphs2((void*)&findSubGraphs2Arg);
}
#else
thread_start(findSubGraphs2, (void*)&findSubGraphs2Arg);
#endif
GOTO_REAL();
TIMER_READ(stop);
/* Verification */
/*
on_one_thread {
printf("\nInt weight sub-graphs \n");
for (i=0; i<maxIntWtListSize; i++) {
printf("%ld -- ", i);
for (j=0; j<intWtVDList[i].numArrays; j++) {
printf("\n [Array %ld] - \n", j);
for (k=0; k<intWtVDList[i].arraySize[j]; k++) {
printf("[%ld %ld] ", intWtVDList[i].vList[j][k].num, intWtVDList[i].vList[j][k].depth);
}
}
printf("\n");
}
printf("\nStr weight sub-graphs \n");
for (i=0; i<soughtStrWtListSize; i++) {
printf("%ld -- ", i);
for (j=0; j<strWtVDList[i].numArrays; j++) {
printf("\n [Array %ld] - \n", j);
for (k=0; k<strWtVDList[i].arraySize[j]; k++) {
printf("[%ld %ld] ", strWtVDList[i].vList[j][k].num, strWtVDList[i].vList[j][k].depth);
}
}
printf("\n");
}
}
*/
} else {
assert(0);
}
time = TIMER_DIFF_SECONDS(start, stop);
totalTime += time;
printf("\n\tfindSubGraphs() completed execution.\n");
printf("\nTime taken for kernel 3 is %9.6f sec.\n\n", time);
#endif /* ENABLE_KERNEL3 */
#ifdef ENABLE_KERNEL4
/* -------------------------------------------------------------------------
* Kernel 4 - Graph Clustering
* -------------------------------------------------------------------------
*/
printf("\nKernel 4 - cutClusters() beginning execution...\n");
TIMER_READ(start);
GOTO_SIM();
#ifdef OTM
#pragma omp parallel
{
cutClusters((void*)G);
}
#else
thread_start(cutClusters, (void*)G);
#endif
GOTO_REAL();
TIMER_READ(stop);
time = TIMER_DIFF_SECONDS(start, stop);
totalTime += time;
printf("\n\tcutClusters() completed execution.\n");
printf("\nTime taken for Kernel 4 is %9.6f sec.\n\n", time);
#endif /* ENABLE_KERNEL4 */
printf("Time = %9.6f \n", totalTime);
/* -------------------------------------------------------------------------
* Cleanup
* -------------------------------------------------------------------------
*/
P_FREE(G->outDegree);
P_FREE(G->outVertexIndex);
P_FREE(G->outVertexList);
P_FREE(G->paralEdgeIndex);
P_FREE(G->inDegree);
P_FREE(G->inVertexIndex);
P_FREE(G->inVertexList);
P_FREE(G->intWeight);
P_FREE(G->strWeight);
#ifdef ENABLE_KERNEL3
LONGINT_T i;
LONGINT_T j;
Vl* currV;
Vl* tempV;
if (K3_DS == 0) {
P_FREE(strWtVList);
P_FREE(intWtVList);
}
if (K3_DS == 1) {
for (i = 0; i < maxIntWtListSize; i++) {
currV = intWtVLList[i];
while (currV != NULL) {
tempV = currV->next;
P_FREE(currV);
currV = tempV;
}
}
for (i = 0; i < soughtStrWtListSize; i++) {
currV = strWtVLList[i];
while (currV != NULL) {
tempV = currV->next;
P_FREE(currV);
currV = tempV;
}
}
P_FREE(strWtVLList);
P_FREE(intWtVLList);
}
if (K3_DS == 2) {
for (i = 0; i < maxIntWtListSize; i++) {
for (j = 0; j < intWtVDList[i].numArrays; j++) {
P_FREE(intWtVDList[i].vList[j]);
}
P_FREE(intWtVDList[i].vList);
P_FREE(intWtVDList[i].arraySize);
}
for (i = 0; i < soughtStrWtListSize; i++) {
for (j = 0; j < strWtVDList[i].numArrays; j++) {
P_FREE(strWtVDList[i].vList[j]);
}
P_FREE(strWtVDList[i].vList);
P_FREE(strWtVDList[i].arraySize);
}
P_FREE(strWtVDList);
P_FREE(intWtVDList);
}
P_FREE(soughtStrWtList);
P_FREE(maxIntWtList);
#endif /* ENABLE_KERNEL2 */
P_FREE(SOUGHT_STRING);
P_FREE(G);
P_FREE(SDGdata);
TM_SHUTDOWN();
P_MEMORY_SHUTDOWN();
GOTO_SIM();
thread_shutdown();
MAIN_RETURN(0);
}
/* =============================================================================
* main
* =============================================================================
*/
MAIN(argc, argv)
{
GOTO_REAL();
/*
* Initialization
*/
parseArgs(argc, (char** const)argv);
long numThread = global_params[PARAM_THREAD];
long numVar = global_params[PARAM_VAR];
long numRecord = global_params[PARAM_RECORD];
long randomSeed = global_params[PARAM_SEED];
long maxNumParent = global_params[PARAM_NUMBER];
long percentParent = global_params[PARAM_PERCENT];
global_insertPenalty = global_params[PARAM_INSERT];
global_maxNumEdgeLearned = global_params[PARAM_EDGE];
SIM_GET_NUM_CPU(numThread);
TM_STARTUP(numThread);
P_MEMORY_STARTUP(numThread);
thread_startup(numThread);
printf("Random seed = %li\n", randomSeed);
printf("Number of vars = %li\n", numVar);
printf("Number of records = %li\n", numRecord);
printf("Max num parents = %li\n", maxNumParent);
printf("%% chance of parent = %li\n", percentParent);
printf("Insert penalty = %li\n", global_insertPenalty);
printf("Max num edge learned / var = %li\n", global_maxNumEdgeLearned);
printf("Operation quality factor = %f\n", global_operationQualityFactor);
fflush(stdout);
/*
* Generate data
*/
printf("Generating data... ");
fflush(stdout);
random_t* randomPtr = random_alloc();
assert(randomPtr);
random_seed(randomPtr, randomSeed);
data_t* dataPtr = data_alloc(numVar, numRecord, randomPtr);
assert(dataPtr);
net_t* netPtr = data_generate(dataPtr, -1, maxNumParent, percentParent);
puts("done.");
fflush(stdout);
/*
* Generate adtree
*/
adtree_t* adtreePtr = adtree_alloc();
assert(adtreePtr);
printf("Generating adtree... ");
fflush(stdout);
TIMER_T adtreeStartTime;
TIMER_READ(adtreeStartTime);
adtree_make(adtreePtr, dataPtr);
TIMER_T adtreeStopTime;
TIMER_READ(adtreeStopTime);
puts("done.");
fflush(stdout);
printf("Adtree time = %f\n",
TIMER_DIFF_SECONDS(adtreeStartTime, adtreeStopTime));
fflush(stdout);
/*
* Score original network
*/
float actualScore = score(netPtr, adtreePtr);
net_free(netPtr);
/*
* Learn structure of Bayesian network
*/
learner_t* learnerPtr = learner_alloc(dataPtr, adtreePtr, numThread);
assert(learnerPtr);
data_free(dataPtr); /* save memory */
printf("Learning structure...");
fflush(stdout);
TIMER_T learnStartTime;
TIMER_READ(learnStartTime);
GOTO_SIM();
learner_run(learnerPtr);
GOTO_REAL();
TIMER_T learnStopTime;
TIMER_READ(learnStopTime);
puts("done.");
fflush(stdout);
printf("Time = %f\n",
TIMER_DIFF_SECONDS(learnStartTime, learnStopTime));
fflush(stdout);
/*
* Check solution
*/
bool_t status = net_isCycle(learnerPtr->netPtr);
assert(!status);
#ifndef SIMULATOR
float learnScore = learner_score(learnerPtr);
printf("Learn score = %f\n", learnScore);
#endif
printf("Actual score = %f\n", actualScore);
/*
* Clean up
*/
fflush(stdout);
random_free(randomPtr);
#ifndef SIMULATOR
adtree_free(adtreePtr);
# if 0
learner_free(learnerPtr);
# endif
#endif
TM_SHUTDOWN();
P_MEMORY_SHUTDOWN();
GOTO_SIM();
thread_shutdown();
MAIN_RETURN(0);
}
/****** run_ijs_server() *******************************************************
* NAME
* run_ijs_server() -- The servers main loop
*
* SYNOPSIS
* int run_ijs_server(u_long32 job_id, int nostdin, int noshell,
* int is_rsh, int is_qlogin, int force_pty,
* int *p_exit_status)
*
* FUNCTION
* The main loop of the commlib server, handling the data transfer from
* and to the client.
*
* INPUTS
* COMM_HANDLE *handle - Handle of the COMM server
* u_long32 job_id - SGE job id of this job
* int nostdin - The "-nostdin" switch
* int noshell - The "-noshell" switch
* int is_rsh - Is it a qrsh with commandline?
* int is_qlogin - Is it a qlogin or qrsh without commandline?
* int suspend_remote - suspend_remote switch of qrsh
* int force_pty - The user forced use of pty by the "-pty yes" switch
*
* OUTPUTS
* int *p_exit_status - The exit status of qrsh_starter in case of
* "qrsh <command>" or the exit status of the shell in
* case of "qrsh <no command>"/"qlogin".
* If the job was signalled, the exit code is 128+signal.
*
* RESULT
* int - 0: Ok.
* 1: Invalid parameter
* 2: Log list not initialized
* 3: Error setting terminal mode
* 4: Can't create tty_to_commlib thread
* 5: Can't create commlib_to_tty thread
* 6: Error shutting down commlib connection
* 7: Error resetting terminal mode
*
* NOTES
* MT-NOTE: run_ijs_server is not MT-safe
*******************************************************************************/
int run_ijs_server(COMM_HANDLE *handle, const char *remote_host,
u_long32 job_id,
int nostdin, int noshell,
int is_rsh, int is_qlogin, ternary_t force_pty,
ternary_t suspend_remote,
int *p_exit_status, dstring *p_err_msg)
{
int ret = 0, ret_val = 0;
THREAD_HANDLE *pthread_tty_to_commlib = NULL;
THREAD_HANDLE *pthread_commlib_to_tty = NULL;
THREAD_LIB_HANDLE *thread_lib_handle = NULL;
cl_raw_list_t *cl_com_log_list = NULL;
DENTER(TOP_LAYER, "run_ijs_server");
if (handle == NULL || p_err_msg == NULL || p_exit_status == NULL || remote_host == NULL) {
return 1;
}
g_comm_handle = handle;
g_hostname = strdup(remote_host);
cl_com_log_list = cl_com_get_log_list();
if (cl_com_log_list == NULL) {
return 2;
}
g_nostdin = nostdin;
g_noshell = noshell;
g_pid = getpid();
g_is_rsh = is_rsh;
if (suspend_remote == UNSET || suspend_remote == NO) {
g_suspend_remote = 0;
} else {
g_suspend_remote = 1;
}
/*
* qrsh without command and qlogin both have is_rsh == 0 and is_qlogin == 1
* qrsh with command and qsh don't need to set terminal mode.
* If the user requested a pty we also have to set terminal mode.
* But only if stdout is still connected to a tty and not redirected
* to a file or a pipe.
*/
if (isatty(STDOUT_FILENO) == 1 &&
((force_pty == UNSET && is_rsh == 0 && is_qlogin == 1) || force_pty == YES)) {
/*
* Set this terminal to raw mode, just output everything, don't interpret
* it. Let the pty on the client side interpret the characters.
*/
ret = terminal_enter_raw_mode();
if (ret != 0) {
sge_dstring_sprintf(p_err_msg, "can't set terminal to raw mode: %s (%d)",
strerror(ret), ret);
return 3;
} else {
g_raw_mode_state = 1;
}
}
/*
* Setup thread list and create two worker threads
*/
thread_init_lib(&thread_lib_handle);
/*
* From here on, we have to cleanup the list in case of errors, this is
* why we "goto cleanup" in case of error.
*/
DPRINTF(("creating worker threads\n"));
DPRINTF(("creating tty_to_commlib thread\n"));
ret = create_thread(thread_lib_handle, &pthread_tty_to_commlib, cl_com_log_list,
"tty_to_commlib thread", 1, tty_to_commlib);
if (ret != CL_RETVAL_OK) {
sge_dstring_sprintf(p_err_msg, "can't create tty_to_commlib thread: %s",
cl_get_error_text(ret));
ret_val = 4;
goto cleanup;
}
DPRINTF(("creating commlib_to_tty thread\n"));
ret = create_thread(thread_lib_handle, &pthread_commlib_to_tty, cl_com_log_list,
"commlib_to_tty thread", 1, commlib_to_tty);
if (ret != CL_RETVAL_OK) {
sge_dstring_sprintf(p_err_msg, "can't create commlib_to_tty thread: %s",
cl_get_error_text(ret));
ret_val = 5;
goto cleanup;
}
/*
* From here on, the two worker threads are doing all the work.
* This main thread is just waiting until the client closes the
* connection to us, which causes the commlib_to_tty thread to
* exit. Then it closes the tty_to_commlib thread, too, and
* cleans up everything.
*/
DPRINTF(("waiting for end of commlib_to_tty thread\n"));
thread_join(pthread_commlib_to_tty);
DPRINTF(("shutting down tty_to_commlib thread\n"));
thread_shutdown(pthread_tty_to_commlib);
/*
* Close stdin to awake the tty_to_commlib-thread from the select() call.
* thread_shutdown() doesn't work on all architectures.
*/
close(STDIN_FILENO);
DPRINTF(("waiting for end of tty_to_commlib thread\n"));
thread_join(pthread_tty_to_commlib);
cleanup:
/*
* Set our terminal back to 'unraw' mode. Should be done automatically
* by OS on process end, but we want to be sure.
*/
ret = terminal_leave_raw_mode();
DPRINTF(("terminal_leave_raw_mode() returned %s (%d)\n", strerror(ret), ret));
if (ret != 0) {
sge_dstring_sprintf(p_err_msg, "error resetting terminal mode: %s (%d)", strerror(ret));
ret_val = 7;
}
*p_exit_status = g_exit_status;
thread_cleanup_lib(&thread_lib_handle);
DRETURN(ret_val);
}
/* =============================================================================
* main
* =============================================================================
*/
MAIN (argc,argv)
{
TIMER_T start;
TIMER_T stop;
/* Initialization */
parseArgs(argc, (char** const)argv);
SIM_GET_NUM_CPU(global_params[PARAM_THREAD]);
printf("Creating gene and segments... ");
fflush(stdout);
long geneLength = global_params[PARAM_GENE];
long segmentLength = global_params[PARAM_SEGMENT];
long minNumSegment = global_params[PARAM_NUMBER];
long numThread = global_params[PARAM_THREAD];
random_t* randomPtr;
gene_t* genePtr;
char* gene;
segments_t* segmentsPtr;
sequencer_t* sequencerPtr;
TM_STARTUP(numThread);
P_MEMORY_STARTUP(numThread);
TM_THREAD_ENTER();
// TM_BEGIN();
randomPtr= random_alloc();
assert(randomPtr != NULL);
random_seed(randomPtr, 0);
genePtr = gene_alloc(geneLength);
assert( genePtr != NULL);
gene_create(genePtr, randomPtr);
gene = genePtr->contents;
segmentsPtr = segments_alloc(segmentLength, minNumSegment);
assert(segmentsPtr != NULL);
segments_create(segmentsPtr, genePtr, randomPtr);
sequencerPtr = sequencer_alloc(geneLength, segmentLength, segmentsPtr);
assert(sequencerPtr != NULL);
//TM_END();
thread_startup(numThread);
puts("done.");
printf("Gene length = %li\n", genePtr->length);
printf("Segment length = %li\n", segmentsPtr->length);
printf("Number segments = %li\n", vector_getSize(segmentsPtr->contentsPtr));
fflush(stdout);
/* Benchmark */
printf("Sequencing gene... ");
fflush(stdout);
// NB: Since ASF/PTLSim "REAL" is native execution, and since we are using
// wallclock time, we want to be sure we read time inside the
// simulator, or else we report native cycles spent on the benchmark
// instead of simulator cycles.
GOTO_SIM();
TIMER_READ(start);
#ifdef OTM
#pragma omp parallel
{
sequencer_run(sequencerPtr);
}
#else
thread_start(sequencer_run, (void*)sequencerPtr);
#endif
TIMER_READ(stop);
// NB: As above, timer reads must be done inside of the simulated region
// for PTLSim/ASF
GOTO_REAL();
puts("done.");
printf("Time = %lf\n", TIMER_DIFF_SECONDS(start, stop));
fflush(stdout);
/* Check result */
{
char* sequence;
int result;
//TM_BEGIN();
sequence= sequencerPtr->sequence;
result = strcmp(gene, sequence);
//TM_END();
printf("Sequence matches gene: %s\n", (result ? "no" : "yes"));
if (result) {
printf("gene = %s\n", gene);
printf("sequence = %s\n", sequence);
}
fflush(stdout);
assert(strlen(sequence) >= strlen(gene));
}
/* Clean up */
printf("Deallocating memory... ");
fflush(stdout);
sequencer_free(sequencerPtr);
segments_free(segmentsPtr);
gene_free(genePtr);
random_free(randomPtr);
puts("done.");
fflush(stdout);
TM_SHUTDOWN();
P_MEMORY_SHUTDOWN();
thread_shutdown();
MAIN_RETURN(0);
}
/* =============================================================================
* main
* =============================================================================
*/
MAIN(argc, argv)
{
/*
* Initialization
*/
parseArgs(argc, (char** const)argv);
SIM_GET_NUM_CPU(global_numThread);
TM_STARTUP(global_numThread);
P_MEMORY_STARTUP(global_numThread);
thread_startup(global_numThread);
global_meshPtr = mesh_alloc();
assert(global_meshPtr);
printf("Angle constraint = %lf\n", global_angleConstraint);
printf("Reading input... ");
long initNumElement = mesh_read(global_meshPtr, (char*)global_inputPrefix);
puts("done.");
global_workHeapPtr = heap_alloc(1, &yada_heapcompare);
assert(global_workHeapPtr);
long initNumBadElement = initializeWork(global_workHeapPtr, global_meshPtr);
printf("Initial number of mesh elements = %li\n", initNumElement);
printf("Initial number of bad elements = %li\n", initNumBadElement);
printf("Starting triangulation...");
fflush(stdout);
/*
* Run benchmark
*/
// NB: Since ASF/PTLSim "REAL" is native execution, and since we are using
// wallclock time, we want to be sure we read time inside the
// simulator, or else we report native cycles spent on the benchmark
// instead of simulator cycles.
GOTO_SIM();
TIMER_T start;
TIMER_READ(start);
#ifdef OTM
#pragma omp parallel
{
process();
}
#else
thread_start((void(*)(void*))process, NULL);
#endif
TIMER_T stop;
TIMER_READ(stop);
// NB: As above, timer reads must be done inside of the simulated region
// for PTLSim/ASF
GOTO_REAL();
puts(" done.");
printf("Elapsed time = %0.3lf\n",
TIMER_DIFF_SECONDS(start, stop));
fflush(stdout);
/*
* Check solution
*/
long finalNumElement = initNumElement + global_totalNumAdded;
printf("Final mesh size = %li\n", finalNumElement);
printf("Number of elements processed = %li\n", global_numProcess);
fflush(stdout);
#if 1
bool isSuccess = mesh_check(global_meshPtr, finalNumElement);
#else
bool isSuccess = true;
#endif
printf("Final mesh is %s\n", (isSuccess ? "valid." : "INVALID!"));
fflush(stdout);
assert(isSuccess);
/*
* TODO: deallocate mesh and work heap
*/
TM_SHUTDOWN();
P_MEMORY_SHUTDOWN();
GOTO_SIM();
thread_shutdown();
MAIN_RETURN(0);
}
/* =============================================================================
* main
* =============================================================================
*/
MAIN(argc, argv)
{
GOTO_REAL();
/*
* Initialization
*/
parseArgs(argc, (char** const)argv);
long numThread = global_params[PARAM_THREAD];
SIM_GET_NUM_CPU(numThread);
TM_STARTUP(numThread);
P_MEMORY_STARTUP(numThread);
thread_startup(numThread);
long percentAttack = global_params[PARAM_ATTACK];
long maxDataLength = global_params[PARAM_LENGTH];
long numFlow = global_params[PARAM_NUM];
long randomSeed = global_params[PARAM_SEED];
printf("Percent attack = %li\n", percentAttack);
printf("Max data length = %li\n", maxDataLength);
printf("Num flow = %li\n", numFlow);
printf("Random seed = %li\n", randomSeed);
dictionary_t* dictionaryPtr = dictionary_alloc();
assert(dictionaryPtr);
stream_t* streamPtr = stream_alloc(percentAttack);
assert(streamPtr);
long numAttack = stream_generate(streamPtr,
dictionaryPtr,
numFlow,
randomSeed,
maxDataLength);
printf("Num attack = %li\n", numAttack);
decoder_t* decoderPtr = decoder_alloc();
assert(decoderPtr);
vector_t** errorVectors = (vector_t**)malloc(numThread * sizeof(vector_t*));
assert(errorVectors);
long i;
for (i = 0; i < numThread; i++) {
vector_t* errorVectorPtr = vector_alloc(numFlow);
assert(errorVectorPtr);
errorVectors[i] = errorVectorPtr;
}
arg_t arg;
arg.streamPtr = streamPtr;
arg.decoderPtr = decoderPtr;
arg.errorVectors = errorVectors;
/*
* Run transactions
*/
TIMER_T startTime;
TIMER_READ(startTime);
GOTO_SIM();
#ifdef OTM
#pragma omp parallel
{
processPackets((void*)&arg);
}
#else
thread_start(processPackets, (void*)&arg);
#endif
GOTO_REAL();
TIMER_T stopTime;
TIMER_READ(stopTime);
printf("\nTime = %lf\n", TIMER_DIFF_SECONDS(startTime, stopTime));
/*
* Check solution
*/
/*long numFound = 0;
for (i = 0; i < numThread; i++) {
vector_t* errorVectorPtr = errorVectors[i];
long e;
long numError = vector_getSize(errorVectorPtr);
numFound += numError;
for (e = 0; e < numError; e++) {
long flowId = (long)vector_at(errorVectorPtr, e);
bool_t status = stream_isAttack(streamPtr, flowId);
assert(status);
}
}*/
/*printf("Num found = %li\n", numFound);
assert(numFound == numAttack);*/
/*
* Clean up
*/
for (i = 0; i < numThread; i++) {
vector_free(errorVectors[i]);
}
free(errorVectors);
decoder_free(decoderPtr);
stream_free(streamPtr);
dictionary_free(dictionaryPtr);
TM_SHUTDOWN();
P_MEMORY_SHUTDOWN();
GOTO_SIM();
thread_shutdown();
MAIN_RETURN(0);
}
/* =============================================================================
* main
* =============================================================================
*/
MAIN(argc, argv)
{
GOTO_REAL();
/*
* Initialization
*/
SETUP_NUMBER_TASKS(3);
parseArgs(argc, (char** const)argv);
long numThread = global_params[PARAM_THREAD];
SETUP_NUMBER_THREADS(numThread);
SIM_GET_NUM_CPU(numThread);
TM_STARTUP(numThread, 0);
P_MEMORY_STARTUP(numThread);
thread_startup(numThread);
long percentAttack = global_params[PARAM_ATTACK];
long maxDataLength = global_params[PARAM_LENGTH];
long numFlow = global_params[PARAM_NUM];
long randomSeed = global_params[PARAM_SEED];
/* printf("Percent attack = %li\n", percentAttack);
printf("Max data length = %li\n", maxDataLength);
printf("Num flow = %li\n", numFlow);
printf("Random seed = %li\n", randomSeed); */
double time_total = 0.0;
int repeats = global_params[PARAM_REPEAT];
for (; repeats > 0; --repeats) {
dictionary_t* dictionaryPtr = dictionary_alloc();
assert(dictionaryPtr);
stream_t* streamPtr = stream_alloc(percentAttack);
assert(streamPtr);
long numAttack = stream_generate(streamPtr,
dictionaryPtr,
numFlow,
randomSeed,
maxDataLength);
// printf("Num attack = %li\n", numAttack);
decoder_t* decoderPtr = decoder_alloc();
assert(decoderPtr);
vector_t** errorVectors = (vector_t**)malloc(numThread * sizeof(vector_t*));
assert(errorVectors);
long i;
for (i = 0; i < numThread; i++) {
vector_t* errorVectorPtr = vector_alloc(numFlow);
assert(errorVectorPtr);
errorVectors[i] = errorVectorPtr;
}
arg_t arg;
arg.streamPtr = streamPtr;
arg.decoderPtr = decoderPtr;
arg.errorVectors = errorVectors;
/*
* Run transactions
*/
TIMER_T startTime;
TIMER_READ(startTime);
tm_time_t start_clock=TM_TIMER_READ();
GOTO_SIM();
thread_start(processPackets, (void*)&arg);
GOTO_REAL();
TIMER_T stopTime;
tm_time_t end_clock=TM_TIMER_READ();
TIMER_READ(stopTime);
double time_tmp = TIMER_DIFF_SECONDS(startTime, stopTime);
time_total += time_tmp;
PRINT_STATS();
PRINT_CLOCK_THROUGHPUT(end_clock-start_clock);
/*
* Check solution
*/
long numFound = 0;
for (i = 0; i < numThread; i++) {
vector_t* errorVectorPtr = errorVectors[i];
long e;
long numError = vector_getSize(errorVectorPtr);
numFound += numError;
for (e = 0; e < numError; e++) {
long flowId = (long)vector_at(errorVectorPtr, e);
bool_t status = stream_isAttack(streamPtr, flowId);
assert(status);
}
}
// printf("Num found = %li\n", numFound);
assert(numFound == numAttack);
/*
* Clean up
*/
for (i = 0; i < numThread; i++) {
vector_free(errorVectors[i]);
}
free(errorVectors);
decoder_free(decoderPtr);
stream_free(streamPtr);
dictionary_free(dictionaryPtr);
}
printf("Time = %f\n", time_total);
TM_SHUTDOWN();
P_MEMORY_SHUTDOWN();
GOTO_SIM();
thread_shutdown();
MAIN_RETURN(0);
}
/* =============================================================================
* main
* =============================================================================
*/
int main (int argc, char** argv)
{
/*
* Initialization
*/
parseArgs(argc, (char** const)argv);
thread_startup(global_numThread);
global_meshPtr = mesh_alloc();
assert(global_meshPtr);
printf("Angle constraint = %lf\n", global_angleConstraint);
printf("Reading input... ");
long initNumElement = mesh_read(global_meshPtr, global_inputPrefix);
puts("done.");
global_workHeapPtr = heap_alloc(1, &element_heapCompare);
assert(global_workHeapPtr);
long initNumBadElement = initializeWork(global_workHeapPtr, global_meshPtr);
printf("Initial number of mesh elements = %li\n", initNumElement);
printf("Initial number of bad elements = %li\n", initNumBadElement);
printf("Starting triangulation...");
fflush(stdout);
/*
* Run benchmark
*/
TIMER_T start;
TIMER_READ(start);
#ifdef OTM
#pragma omp parallel
{
process();
}
#else
thread_start(process, NULL);
#endif
TIMER_T stop;
TIMER_READ(stop);
puts(" done.");
printf("Time = %0.3lf\n",
TIMER_DIFF_SECONDS(start, stop));
fflush(stdout);
/*
* Check solution
*/
long finalNumElement = initNumElement + global_totalNumAdded;
printf("Final mesh size = %li\n", finalNumElement);
printf("Number of elements processed = %li\n", global_numProcess);
fflush(stdout);
#if 0
bool_t isSuccess = mesh_check(global_meshPtr, finalNumElement);
#else
bool_t isSuccess = TRUE;
#endif
printf("Final mesh is %s\n", (isSuccess ? "valid." : "INVALID!"));
fflush(stdout);
assert(isSuccess);
/*
* TODO: deallocate mesh and work heap
*/
thread_shutdown();
return 0;
}
/* =============================================================================
* main
* =============================================================================
*/
MAIN(argc, argv)
{
int i;
//FILE * wfile;
# ifdef SIMULATOR
printf("SIMULATOR is defined\n");
# else
printf("SIMULATOR is not defined\n");
# endif /* !SIMULATOR */
#if defined(STM)
printf("STM is defined\n");
# else
printf("STM is not defined\n");
# endif /* !SIMULATOR */
GOTO_REAL();
/*
* Initialization
*/
if(argc !=3)
printf("needs two input arguments, \"max_count, num_threads\",argc=%d\n\n", argc);
max_count = atoi(argv[1]);
long numThread = atoi(argv[2]);
if(numThread > MAX_NUM_OF_THREADS)
printf("num_threads can be at most %d\n\n", MAX_NUM_OF_THREADS);
//else
//printf("numThread = %d\n\n", (int)numThread);
for(i=0; i<MAX_NUM_OF_THREADS; i++)
threads_arg[i]=i;
SIM_GET_NUM_CPU(numThread);
TM_STARTUP(numThread);
P_MEMORY_STARTUP(numThread);
thread_startup(numThread);
/*
* Run transactions
*/
//router_solve_arg_t routerArg = {routerPtr, mazePtr, pathVectorListPtr};
TIMER_T startTime;
TIMER_READ(startTime);
GOTO_SIM();
thread_start(func_count, (void*)threads_arg);
GOTO_REAL();
TIMER_T stopTime;
TIMER_READ(stopTime);
//printf("Elapsed time = %f seconds\n", TIMER_DIFF_SECONDS(startTime, stopTime));
/*
* Check solution and clean up
*/
TM_SHUTDOWN();
P_MEMORY_SHUTDOWN();
GOTO_SIM();
thread_shutdown();
//wfile = fopen ("exe_time.txt","a");
//fprintf(wfile, "Elapsed time = %f, Aborts/starts=%f, Aborts=%f, starts=%f\n", TIMER_DIFF_SECONDS(startTime, stopTime), (float)((float)(AbortTally*100)/((float)StartTally)), (float)AbortTally, (float)StartTally);
//fclose(wfile);
//printf("final value of counter=%d\n\n", my_counter);
MAIN_RETURN(0);
}