/**
* Does the projection between ... space and the ... space. Also checks for Q-inflow boundary
* conditions at the inflow of the current arterial segment and applies the Q-inflow if specified
*/
void PulseWavePropagation::SetPulseWaveBoundaryConditions(
const Array<OneD,const Array<OneD, NekDouble> >&inarray,
Array<OneD, Array<OneD, NekDouble> >&outarray,
const NekDouble time)
{
int omega;
Array<OneD, MultiRegions::ExpListSharedPtr> vessel(2);
int offset=0;
//This will be moved to the RCR boundary condition once factory is setup
if (time == 0)
{
m_Boundary = Array<OneD,PulseWaveBoundarySharedPtr>(2*m_nDomains);
for(omega = 0; omega < m_nDomains; ++omega)
{
vessel[0] = m_vessels[2*omega];
for(int j = 0; j < 2; ++j)
{
std::string BCType =vessel[0]->GetBndConditions()[j]->GetUserDefined();
if(BCType.empty()) // if not condition given define it to be NoUserDefined
{
BCType = "NoUserDefined";
}
m_Boundary[2*omega+j]=GetBoundaryFactory().CreateInstance(BCType,m_vessels,m_session,m_pressureArea);
// turn on time depedent BCs
if(BCType == "Q-inflow")
{
vessel[0]->GetBndConditions()[j]->SetIsTimeDependent(true);
}
else if(BCType == "RCR-terminal")
{
vessel[0]->GetBndConditions()[j]->SetIsTimeDependent(true);
}
}
}
}
SetBoundaryConditions(time);
// Loop over all vessesls and set boundary conditions
for(omega = 0; omega < m_nDomains; ++omega)
{
for(int n = 0; n < 2; ++n)
{
m_Boundary[2*omega+n]->DoBoundary(inarray,m_A_0,m_beta,time,omega,offset,n);
}
offset += m_vessels[2*omega]->GetTotPoints();
}
}
void TreeConstruct(const mist::array3<short>& image, tmatsu::artery::Tree& tree, tmatsu::Point seedPoint )
{
tmatsu::artery::CTImage vessel(image);
tmatsu::artery::ThicknessImage centerline;
vessel.thinning(centerline);
tree.construct(centerline, seedPoint);
vessel.clear();
centerline.clear();
}
