bool openOutput(const ArgumentParser &args, ofstream *outF){//{{{ outF->open(args.getS("outFileName").c_str()); if(!outF->is_open()){ error("Main: Output file open failed.\n"); return false; } return true; }//}}}
string getOutputType(const ArgumentParser &args, const string &defaultType){ //{{{ string type = ns_misc::toLower(args.getS("outputType")); if((type!="theta") && (type!="rpkm") && (type!="counts") && (type!="tau")){ type = defaultType; warning("Using output type %s.",type.c_str()); } return type; } //}}}