// virtual
void CModelParameterReactionParameter::compile()
{
CModelParameter::compile();
mGlobalQuantityCN = std::string();
std::string Infix = getInitialExpression();
if (Infix.length() > 2)
{
// Infix: <CN,Reference=InitialValue> or <CN,Reference=Value>
CCopasiObjectName Tmp = Infix.substr(1, Infix.length() - 2);
std::string Separator = "";
for (; Tmp != ""; Tmp = Tmp.getRemainder())
{
CCopasiObjectName Primary = Tmp.getPrimary();
if (Primary.getObjectType() == "Reference")
{
break;
}
mGlobalQuantityCN += Separator + Primary;
Separator = ",";
}
setSimulationType(CModelEntity::ASSIGNMENT);
}
else
{
setSimulationType(CModelEntity::FIXED);
}
mpGlobalQuantity = this->getSet()->getModelParameter(mGlobalQuantityCN);
if (mpGlobalQuantity != NULL)
{
mValue = mpGlobalQuantity->getValue(ParticleNumbers);
}
std::vector< CCopasiContainer * > ListOfContainer;
CModel * pModel = getModel();
ListOfContainer.push_back(pModel);
mpReaction = static_cast< CReaction * >(pModel->getObjectDataModel()->ObjectFromName(ListOfContainer, mpParent->getCN()));
}
// virtual
void CModelParameterSpecies::setCN(const CCopasiObjectName & cn)
{
CModelParameter::setCN(cn);
// Determine the CN for the compartment.
// "CN=Root,Model=New Model,Vector=Compartments[compartment],Vector=Metabolites[A]"
CCopasiObjectName Tmp = mCN;
std::string Separator = "";
for (; Tmp != ""; Tmp = Tmp.getRemainder())
{
CCopasiObjectName Primary = Tmp.getPrimary();
mCompartmentCN += Separator + Primary;
Separator = ",";
if (Primary.getObjectType() == "Vector" &&
Primary.getObjectName() == "Compartments")
{
break;
}
}
}