void operator()( const CDirEntry & dirEntry ) {
//const static size_t kInvalidFileNumber = numeric_limits<size_t>::max();
if( ! dirEntry.IsFile() ) {
return;
}
CFile file(dirEntry);
string name = file.GetName();
if (NStr::EndsWith(name, ".txt") || NStr::StartsWith(name, ".")) {
return;
}
if (NStr::EndsWith(name, extKeep)) {
return;
}
// extract info from the file name
const string sFileName = file.GetName();
vector<string> vecFileNamePieces;
NStr::Split( sFileName, ".", vecFileNamePieces );
BOOST_REQUIRE(vecFileNamePieces.size() == 3);
string sTestName = vecFileNamePieces[0];
BOOST_REQUIRE(!sTestName.empty());
string sObjType = vecFileNamePieces[1];
BOOST_REQUIRE(!sObjType.empty());
string sFileType = vecFileNamePieces[2];
BOOST_REQUIRE(!sFileType.empty());
STestInfo & test_info_to_load =
(*m_pTestNameToInfoMap)[vecFileNamePieces[0]];
// assign object type contained in test input
if (sObjType == "entry" || sObjType == "annot") {
test_info_to_load.mObjType = sObjType;
}
else {
BOOST_FAIL("Unknown object type " << sObjType << ".");
}
// figure out what type of file we have and set appropriately
if (sFileType == mExtInput) {
BOOST_REQUIRE( test_info_to_load.mInFile.GetPath().empty() );
test_info_to_load.mInFile = file;
}
else if (sFileType == mExtOutput) {
BOOST_REQUIRE( test_info_to_load.mOutFile.GetPath().empty() );
test_info_to_load.mOutFile = file;
}
else if (sFileType == mExtErrors) {
BOOST_REQUIRE( test_info_to_load.mErrorFile.GetPath().empty() );
test_info_to_load.mErrorFile = file;
}
else {
BOOST_FAIL("Unknown file type " << sFileName << ".");
}
}
void operator()( const CDirEntry & dirEntry ) {
if( ! dirEntry.IsFile() ) {
return;
}
CFile file(dirEntry);
string name = file.GetName();
if (NStr::EndsWith(name, ".txt") || NStr::StartsWith(name, ".")) {
return;
}
// extract info from the file name
const string sFileName = file.GetName();
vector<CTempString> vecFileNamePieces;
NStr::Split( sFileName, ".", vecFileNamePieces );
BOOST_REQUIRE(vecFileNamePieces.size() == 2);
CTempString tsTestName = vecFileNamePieces[0];
BOOST_REQUIRE(!tsTestName.empty());
CTempString tsFileType = vecFileNamePieces[1];
BOOST_REQUIRE(!tsFileType.empty());
STestInfo & test_info_to_load =
(*m_pTestNameToInfoMap)[vecFileNamePieces[0]];
// figure out what type of file we have and set appropriately
if (tsFileType == mExtInput) {
BOOST_REQUIRE( test_info_to_load.mInFile.GetPath().empty() );
test_info_to_load.mInFile = file;
}
else if (tsFileType == mExtOutput) {
BOOST_REQUIRE( test_info_to_load.mOutFile.GetPath().empty() );
test_info_to_load.mOutFile = file;
}
else if (tsFileType == mExtErrors) {
BOOST_REQUIRE( test_info_to_load.mErrorFile.GetPath().empty() );
test_info_to_load.mErrorFile = file;
}
else {
BOOST_FAIL("Unknown file type " << sFileName << ".");
}
}
void operator()( const CDirEntry & dirEntry ) {
const static size_t kInvalidFileNumber = numeric_limits<size_t>::max();
if( ! dirEntry.IsFile() ) {
return;
}
CFile file(dirEntry);
// skip the README file
if( file.GetName() == "README.txt" ) {
return;
}
// skip .svn files
if( NStr::Find(file.GetPath(), ".svn") != NPOS )
{
return;
}
const string sFilePath = file.GetPath();
cout << "Parsing file name: " << sFilePath << endl;
// extract info from the file name
const string sFileName = file.GetName();
vector<CTempString> vecFileNamePieces;
NStr::Tokenize( sFileName, ".", vecFileNamePieces );
BOOST_REQUIRE( vecFileNamePieces.size() == 2 ||
vecFileNamePieces.size() == 3 );
CTempString tsTestName = vecFileNamePieces[0];
BOOST_REQUIRE( ! tsTestName.empty() );
CTempString tsFileType = vecFileNamePieces[1];
size_t iFileNumber = kInvalidFileNumber;
if( vecFileNamePieces.size() > 2 ) {
iFileNumber = NStr::StringToUInt(vecFileNamePieces[2]);
}
STestInfo & test_info_to_load =
(*m_pTestNameToInfoMap)[vecFileNamePieces[0]];
// figure out what type of file we have and set appropriately
if( tsFileType == "agp" && iFileNumber == kInvalidFileNumber ) {
// handle agp file
// (and make sure we don't have duplicates)
BOOST_REQUIRE( test_info_to_load.m_AGPFile.GetPath().empty() );
test_info_to_load.m_AGPFile = file;
} else if( tsFileType == "expected_seq_entry" && iFileNumber != kInvalidFileNumber )
{
// handle expected seq-entry file
// (Note that the files could come in in any order)
vector<CFile> & vecExpectedSeqEntryFiles =
test_info_to_load.m_vecExpectedSeqEntryFiles;
if( vecExpectedSeqEntryFiles.size() <= iFileNumber ) {
// expand the vector to include this file number
vecExpectedSeqEntryFiles.resize( 1 + iFileNumber );
}
// make sure no duplicates
BOOST_REQUIRE( vecExpectedSeqEntryFiles[iFileNumber].GetPath().empty() );
vecExpectedSeqEntryFiles[iFileNumber] = file;
} else if( tsFileType == "flags" && iFileNumber == kInvalidFileNumber ) {
// handle flags file
BOOST_REQUIRE( test_info_to_load.m_FlagFile.GetPath().empty() );
test_info_to_load.m_FlagFile = file;
} else {
BOOST_FAIL("Unknown file type");
}
}
