void PhylipPlugin::processCmdlineOptions() { CMDLineRegistry *cmdLineRegistry = AppContext::getCMDLineRegistry(); CHECK(cmdLineRegistry->hasParameter(PhylipCmdlineTask::PHYLIP_CMDLINE), ); CHECK(cmdLineRegistry->hasParameter(CmdlineInOutTaskRunner::OUT_DB_ARG), ); CHECK(cmdLineRegistry->hasParameter(CmdlineInOutTaskRunner::IN_DB_ARG), ); CHECK(cmdLineRegistry->hasParameter(CmdlineInOutTaskRunner::IN_ID_ARG), ); CreatePhyTreeSettings settings = fetchSettings(); QString outDbString = cmdLineRegistry->getParameterValue(CmdlineInOutTaskRunner::OUT_DB_ARG); QString inDbString = cmdLineRegistry->getParameterValue(CmdlineInOutTaskRunner::IN_DB_ARG); QString idString = cmdLineRegistry->getParameterValue(CmdlineInOutTaskRunner::IN_ID_ARG); U2OpStatus2Log os; U2DbiRef outDbiRef = CmdlineInOutTaskRunner::parseDbiRef(outDbString, os); CHECK_OP(os, ); U2DbiRef inDbiRef = CmdlineInOutTaskRunner::parseDbiRef(inDbString, os); CHECK_OP(os, ); U2DataId dataId = CmdlineInOutTaskRunner::parseDataId(idString, inDbiRef, os); CHECK_OP(os, ); Task *t = new PhylipTask(U2EntityRef(inDbiRef, dataId), outDbiRef, settings); connect(AppContext::getPluginSupport(), SIGNAL(si_allStartUpPluginsLoaded()), new TaskStarter(t), SLOT(registerTask())); }
void ConsoleLogDriver::setLogSettings() { CMDLineRegistry *cmd = AppContext::getCMDLineRegistry(); if(cmd->hasParameter(CMDLineCoreOptions::LOG_FORMAT)) { QString logFormat = cmd->getParameterValue(CMDLineCoreOptions::LOG_FORMAT); settings.showLevel = logFormat.contains("L", Qt::CaseSensitive); settings.showCategory = logFormat.contains("C", Qt::CaseSensitive); settings.showDate = logFormat.contains(QRegExp("[M{2}Y{2,4}d{2}H{2}m{2}s{2}z{3}]")); settings.logPattern = logFormat; } else if(cmd->hasParameter( LOG_SHOW_DATE_CMD_OPTION ) || //old options cmd->hasParameter( LOG_SHOW_LEVEL_CMD_OPTION ) || cmd->hasParameter( LOG_SHOW_CATEGORY_CMD_OPTION )){ settings.logPattern = ""; if (cmd->hasParameter( LOG_SHOW_DATE_CMD_OPTION )) { settings.showDate = true; settings.logPattern += "[hh:mm]"; } if (cmd->hasParameter( LOG_SHOW_LEVEL_CMD_OPTION )) { settings.showLevel = true; settings.logPattern += "[L]"; } if (cmd->hasParameter( LOG_SHOW_CATEGORY_CMD_OPTION )) { settings.showCategory = true; settings.logPattern += "[C]"; } } else{ settings.logPattern = "[hh:mm][L]"; } QString logLevel; if(cmd->hasParameter(CMDLineCoreOptions::LOG_LEVEL)){ logLevel = cmd->getParameterValue(CMDLineCoreOptions::LOG_LEVEL); } else if( cmd->hasParameter( LOG_LEVEL_NONE_CMD_OPTION ) ){ logLevel = "NONE"; } else if(cmd->hasParameter( LOG_LEVEL_ERROR_CMD_OPTION )) { logLevel = "ERROR"; }else if( cmd->hasParameter( LOG_LEVEL_INFO_CMD_OPTION ) ) { logLevel = "INFO"; } else if( cmd->hasParameter( LOG_LEVEL_DETAILS_CMD_OPTION ) ) { logLevel = "DETAILS"; } else if( cmd->hasParameter( LOG_LEVEL_TRACE_CMD_OPTION ) ) { logLevel = "TRACE"; }else { logLevel = "ERROR"; } LogServer* ls = LogServer::getInstance(); const QStringList& categoryList = ls->getCategories(); logLevel = logLevel.remove(" "); QStringList cats = logLevel.split(QRegExp("[,=]")); LogCategories::init(); if(cats.size() == 1) { int minLevel = 10; for (int i=0; i<LogLevel_NumLevels; i++) { if(getLevelName((LogLevel)i) == logLevel) { minLevel = i; } } for (int i=0; i<LogLevel_NumLevels; i++) { settings.activeLevelGlobalFlag[i] = (i >= minLevel); } foreach(const QString &str, categoryList) { LoggerSettings cs; cs.categoryName = str; for (int i=0; i<LogLevel_NumLevels; i++) { cs.activeLevelFlag[i] = (i >= minLevel); } settings.categories[str] = cs; }