C++ (Cpp) CSeq_feat::SetPseudo示例

示例#1

文件： so_map.cpp 项目： svn2github/ncbi_tk

//  ----------------------------------------------------------------------------
bool CSoMap::xFeatureMakeMiscRna(
    const string& so_type,
    CSeq_feat& feature)
//  ----------------------------------------------------------------------------
{
    feature.SetData().SetImp().SetKey("misc_RNA");
    if (so_type=="pseudogenic_transcript") {
        feature.SetPseudo(true);
    }
    return true;
}

示例#2

文件： so_map.cpp 项目： svn2github/ncbi_tk

//  ----------------------------------------------------------------------------
bool CSoMap::xFeatureMakeCds(
    const string& so_type,
    CSeq_feat& feature)
//  ----------------------------------------------------------------------------
{
    feature.SetData().SetCdregion();
    if (so_type=="pseudogenic_CDS") {
        feature.SetPseudo(true);
    }
    return true;
}

示例#3

文件： so_map.cpp 项目： svn2github/ncbi_tk

//  ----------------------------------------------------------------------------
bool CSoMap::xFeatureMakeGene(
    const string& so_type,
    CSeq_feat& feature)
//  ----------------------------------------------------------------------------
{
    feature.SetData().SetGene();
    if (so_type == "pseudogene") {
        feature.SetPseudo(true);
    }
    return true;
}

示例#4

文件： so_map.cpp 项目： svn2github/ncbi_tk

//  ----------------------------------------------------------------------------
bool CSoMap::xFeatureMakeRna(
    const string& so_type,
    CSeq_feat& feature)
//  ----------------------------------------------------------------------------
{
    static const map<string, CRNA_ref::EType, CompareNoCase> mTypeToRna = {
        {"mRNA", CRNA_ref::eType_mRNA},
        {"rRNA", CRNA_ref::eType_rRNA},
        {"pseudogenic_rRNA", CRNA_ref::eType_rRNA},
        {"tRNA", CRNA_ref::eType_tRNA},
        {"pseudogenic_tRNA", CRNA_ref::eType_tRNA},
        {"tmRNA", CRNA_ref::eType_tmRNA},
    };
    auto it = mTypeToRna.find(so_type);
    feature.SetData().SetRna().SetType(it->second);
    if(NStr::StartsWith(so_type, "pseudogenic_")) {
        feature.SetPseudo(true);
    }
    return true;
}