void TestArchiveCellPropertyCollection() throw (Exception)
{
OutputFileHandler handler("archive", false);
std::string archive_filename = handler.GetOutputDirectoryFullPath() + "properties.arch";
// Archive a cell property collection
{
// Create a cell property collection
CellPropertyCollection collection;
NEW_PROP(BetaCateninOneHitCellMutationState, p_bcat1_mutation);
collection.AddProperty(p_bcat1_mutation);
NEW_PROP(ApcOneHitCellMutationState, p_apc1_mutation);
collection.AddProperty(p_apc1_mutation);
// Create an output archive
std::ofstream ofs(archive_filename.c_str());
boost::archive::text_oarchive output_arch(ofs);
// Write the cell to the archive
output_arch << static_cast<const CellPropertyCollection>(collection);
}
// Restore cell property collection
{
CellPropertyCollection collection;
// Restore the cell property collection
std::ifstream ifs(archive_filename.c_str());
boost::archive::text_iarchive input_arch(ifs);
input_arch >> collection;
// Test that the collection was archived correctly
TS_ASSERT_EQUALS(collection.GetSize(), 2u);
TS_ASSERT_EQUALS(collection.HasProperty<BetaCateninOneHitCellMutationState>(), true);
TS_ASSERT_EQUALS(collection.HasProperty<ApcOneHitCellMutationState>(), true);
TS_ASSERT_EQUALS(collection.HasProperty<ApcTwoHitCellMutationState>(), false);
NEW_PROP(ApcOneHitCellMutationState, p_apc1_mutation_2);
TS_ASSERT_EQUALS(collection.HasProperty(p_apc1_mutation_2), false);
TS_ASSERT_EQUALS(collection.HasPropertyType<AbstractCellProperty>(), true);
TS_ASSERT_EQUALS(collection.HasPropertyType<AbstractCellMutationState>(), true);
for (CellPropertyCollection::Iterator it = collection.Begin(); it != collection.End(); ++it)
{
TS_ASSERT_EQUALS(collection.HasProperty(*it), true);
TS_ASSERT((*it)->IsType<BetaCateninOneHitCellMutationState>() || (*it)->IsType<ApcOneHitCellMutationState>());
TS_ASSERT_EQUALS((*it)->IsSubType<AbstractCellMutationState>(), true);
}
}
}
void TestPropertyCollection() throw (Exception)
{
CellPropertyCollection collection;
TS_ASSERT_EQUALS(collection.GetSize(), 0u);
// Test that the CellPropertyRegistry assigned to the CellPropertyCollection defaults to CellPropertyRegistry::Instance().
TS_ASSERT_EQUALS(collection.GetCellPropertyRegistry(),CellPropertyRegistry::Instance());
// Add some properties
NEW_PROP(WildTypeCellMutationState, p_wt_mutation);
TS_ASSERT_EQUALS(p_wt_mutation->GetIdentifier(), "WildTypeCellMutationState");
collection.AddProperty(p_wt_mutation);
NEW_PROP(ApcOneHitCellMutationState, p_apc1_mutation);
collection.AddProperty(p_apc1_mutation);
// Test we can't add the same *object* twice
TS_ASSERT_THROWS_THIS(collection.AddProperty(p_wt_mutation),
"That property object is already in the collection.");
NEW_PROP(WildTypeCellMutationState, p_wt_mutation_2);
collection.AddProperty(p_wt_mutation_2);
collection.RemoveProperty(p_wt_mutation_2);
// Check the contents
TS_ASSERT_EQUALS(collection.GetSize(), 2u);
// ...by object
TS_ASSERT_EQUALS(collection.HasProperty(p_wt_mutation), true);
TS_ASSERT_EQUALS(collection.HasProperty(p_apc1_mutation), true);
NEW_PROP(ApcOneHitCellMutationState, p_apc1_mutation_2);
TS_ASSERT_EQUALS(collection.HasProperty(p_apc1_mutation_2), false);
// ...by type
TS_ASSERT_EQUALS(collection.HasProperty<WildTypeCellMutationState>(), true);
TS_ASSERT_EQUALS(collection.HasProperty<ApcOneHitCellMutationState>(), true);
TS_ASSERT_EQUALS(collection.HasProperty<ApcTwoHitCellMutationState>(), false);
// ..by subclass
TS_ASSERT_EQUALS(collection.HasPropertyType<AbstractCellProperty>(), true);
TS_ASSERT_EQUALS(collection.HasPropertyType<AbstractCellMutationState>(), true);
//TS_ASSERT_EQUALS(!collection.HasProperty<AbstractCellMutationState>(), false); <-- This won't compile (yet)
// ..by iteration
for (CellPropertyCollection::Iterator it = collection.Begin(); it != collection.End(); ++it)
{
TS_ASSERT_EQUALS(collection.HasProperty(*it), true);
TS_ASSERT((*it)->IsType<WildTypeCellMutationState>() || (*it)->IsType<ApcOneHitCellMutationState>());
TS_ASSERT_EQUALS((*it)->IsSubType<AbstractCellMutationState>(), true);
}
// Remove property
collection.RemoveProperty<WildTypeCellMutationState>();
TS_ASSERT_EQUALS(collection.HasProperty<WildTypeCellMutationState>(), false);
collection.RemoveProperty(p_apc1_mutation);
TS_ASSERT_EQUALS(collection.HasProperty<ApcOneHitCellMutationState>(), false);
TS_ASSERT_THROWS_THIS(collection.RemoveProperty<WildTypeCellMutationState>(),
"Collection does not contain the given property type.");
TS_ASSERT_THROWS_THIS(collection.RemoveProperty(p_apc1_mutation),
"Collection does not contain the given property.");
TS_ASSERT_EQUALS(collection.GetSize(), 0u);
// Get matching properties
collection.AddProperty(p_wt_mutation);
collection.AddProperty(p_apc1_mutation);
CellPropertyCollection mutations = collection.GetPropertiesType<AbstractCellMutationState>();
TS_ASSERT_EQUALS(mutations.GetSize(), 2u);
CellPropertyCollection::Iterator it = mutations.Begin();
TS_ASSERT_EQUALS(collection.HasProperty(*it), true);
TS_ASSERT_EQUALS((*it)->IsSubType<AbstractCellMutationState>(), true);
TS_ASSERT( (*it)->IsType<WildTypeCellMutationState>() || (*(++it))->IsType<WildTypeCellMutationState>() );
CellPropertyCollection wild_types = collection.GetProperties<WildTypeCellMutationState>();
TS_ASSERT_EQUALS(wild_types.GetSize(), 1u);
it = wild_types.Begin();
TS_ASSERT_EQUALS((*it)->IsType<WildTypeCellMutationState>(), true);
TS_ASSERT( *it == wild_types.GetProperty() );
TS_ASSERT_THROWS_THIS(collection.GetProperty(),
"Can only call GetProperty on a collection of size 1.");
}
