// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindMaxima::dataCheck()
{
setErrorCondition(0);
DataArrayPath tempPath;
//check for required arrays
QVector<size_t> compDims(1, 1);
m_SelectedCellArrayPtr = TemplateHelpers::GetPrereqArrayFromPath<AbstractFilter>()(this, getSelectedCellArrayPath(), compDims);
if(NULL != m_SelectedCellArrayPtr.lock().get())
{
m_SelectedCellArray = m_SelectedCellArrayPtr.lock().get();
}
if(getErrorCondition() < 0) { return; }
ImageGeom::Pointer image = getDataContainerArray()->getDataContainer(getSelectedCellArrayPath().getDataContainerName())->getPrereqGeometry<ImageGeom, AbstractFilter>(this);
if(getErrorCondition() < 0 || NULL == image.get()) { return; }
//configured created name / location
tempPath.update(getSelectedCellArrayPath().getDataContainerName(), getSelectedCellArrayPath().getAttributeMatrixName(), getNewCellArrayName() );
DataContainer::Pointer dataContiner = getDataContainerArray()->getPrereqDataContainer<AbstractFilter>(this, getSelectedCellArrayPath().getDataContainerName() );
AttributeMatrix::Pointer attrMatrix = dataContiner->getPrereqAttributeMatrix<AbstractFilter>(this, getSelectedCellArrayPath().getAttributeMatrixName(), 80000);
IDataArray::Pointer redArrayptr = attrMatrix->getPrereqIDataArray<IDataArray, AbstractFilter>(this, getSelectedCellArrayPath().getDataArrayName(), 80000);
//create new boolean array
tempPath.update(getSelectedCellArrayPath().getDataContainerName(), getSelectedCellArrayPath().getAttributeMatrixName(), getNewCellArrayName() );
m_NewCellArrayPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<bool>, AbstractFilter, bool>(this, tempPath, 0, compDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_NewCellArrayPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_NewCellArray = m_NewCellArrayPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void AlignSections::dataCheck()
{
setErrorCondition(0);
DataArrayPath tempPath;
ImageGeom::Pointer image = getDataContainerArray()->getPrereqGeometryFromDataContainer<ImageGeom, AbstractFilter>(this, getDataContainerName());
if(getErrorCondition() < 0) { return; }
if (image->getXPoints() <= 1 || image->getYPoints() <= 1 || image->getZPoints() <= 1)
{
QString ss = QObject::tr("The Image Geometry is not 3D and cannot be run through this filter. The dimensions are (%1,%2,%3)").arg(image->getXPoints()).arg(image->getYPoints()).arg(image->getZPoints());
setErrorCondition(-3010);
notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
}
tempPath.update(getDataContainerName(), getCellAttributeMatrixName(), "");
getDataContainerArray()->getPrereqAttributeMatrixFromPath<AbstractFilter>(this, tempPath, -301);
if (true == m_WriteAlignmentShifts && m_AlignmentShiftFileName.isEmpty() == true)
{
QString ss = QObject::tr("The alignment shift file name is empty");
setErrorCondition(-1);
notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
}
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void ImageCalculator::dataCheck()
{
setErrorCondition(0);
DataArrayPath tempPath;
QVector<size_t> dims(1, 1);
m_SelectedCellArray1Ptr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<ImageProcessing::DefaultPixelType>, AbstractFilter>(this, getSelectedCellArrayPath1(), dims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_SelectedCellArray1Ptr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_SelectedCellArray1 = m_SelectedCellArray1Ptr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() < 0) { return; }
ImageGeom::Pointer image1 = getDataContainerArray()->getDataContainer(getSelectedCellArrayPath1().getDataContainerName())->getPrereqGeometry<ImageGeom, AbstractFilter>(this);
if(getErrorCondition() < 0 || NULL == image1.get()) { return; }
m_SelectedCellArray2Ptr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<ImageProcessing::DefaultPixelType>, AbstractFilter>(this, getSelectedCellArrayPath2(), dims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_SelectedCellArray2Ptr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_SelectedCellArray2 = m_SelectedCellArray2Ptr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() < 0) { return; }
ImageGeom::Pointer image2 = getDataContainerArray()->getDataContainer(getSelectedCellArrayPath2().getDataContainerName())->getPrereqGeometry<ImageGeom, AbstractFilter>(this);
if(getErrorCondition() < 0 || NULL == image2.get()) { return; }
tempPath.update(getSelectedCellArrayPath1().getDataContainerName(), getSelectedCellArrayPath1().getAttributeMatrixName(), getNewCellArrayName() );
m_NewCellArrayPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<ImageProcessing::DefaultPixelType>, AbstractFilter, ImageProcessing::DefaultPixelType>(this, tempPath, 0, dims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_NewCellArrayPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_NewCellArray = m_NewCellArrayPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindTwinBoundarySchmidFactors::dataCheckSurfaceMesh()
{
setErrorCondition(0);
DataArrayPath tempPath;
QVector<DataArrayPath> dataArrayPaths;
getDataContainerArray()->getPrereqGeometryFromDataContainer<TriangleGeom, AbstractFilter>(this, getSurfaceMeshFaceLabelsArrayPath().getDataContainerName());
QVector<size_t> cDims(1, 2);
m_SurfaceMeshFaceLabelsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getSurfaceMeshFaceLabelsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_SurfaceMeshFaceLabelsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_SurfaceMeshFaceLabels = m_SurfaceMeshFaceLabelsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getSurfaceMeshFaceLabelsArrayPath()); }
cDims[0] = 3;
m_SurfaceMeshFaceNormalsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<double>, AbstractFilter>(this, getSurfaceMeshFaceNormalsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_SurfaceMeshFaceNormalsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_SurfaceMeshFaceNormals = m_SurfaceMeshFaceNormalsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getSurfaceMeshFaceNormalsArrayPath()); }
tempPath.update(getSurfaceMeshFaceLabelsArrayPath().getDataContainerName(), getSurfaceMeshFaceLabelsArrayPath().getAttributeMatrixName(), getSurfaceMeshTwinBoundarySchmidFactorsArrayName() );
m_SurfaceMeshTwinBoundarySchmidFactorsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<float>, AbstractFilter, float>(this, tempPath, 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_SurfaceMeshTwinBoundarySchmidFactorsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_SurfaceMeshTwinBoundarySchmidFactors = m_SurfaceMeshTwinBoundarySchmidFactorsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
cDims[0] = 1;
m_SurfaceMeshTwinBoundaryPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<bool>, AbstractFilter>(this, getSurfaceMeshTwinBoundaryArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_SurfaceMeshTwinBoundaryPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_SurfaceMeshTwinBoundary = m_SurfaceMeshTwinBoundaryPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getSurfaceMeshTwinBoundaryArrayPath()); }
getDataContainerArray()->validateNumberOfTuples<AbstractFilter>(this, dataArrayPaths);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void ReadStlFile::dataCheck()
{
setErrorCondition(0);
DataArrayPath tempPath;
if (m_StlFilePath.isEmpty() == true)
{
setErrorCondition(-1003);
notifyErrorMessage(getHumanLabel(), "The input file must be set", -1003);
}
// Create a SufaceMesh Data Container with Faces, Vertices, Feature Labels and optionally Phase labels
DataContainer::Pointer sm = getDataContainerArray()->createNonPrereqDataContainer<AbstractFilter>(this, getSurfaceMeshDataContainerName());
if(getErrorCondition() < 0) { return; }
SharedVertexList::Pointer sharedVertList = TriangleGeom::CreateSharedVertexList(0);
TriangleGeom::Pointer triangleGeom = TriangleGeom::CreateGeometry(0, sharedVertList, DREAM3D::Geometry::TriangleGeometry);
sm->setGeometry(triangleGeom);
QVector<size_t> tDims(1, 0);
sm->createNonPrereqAttributeMatrix<AbstractFilter>(this, getFaceAttributeMatrixName(), tDims, DREAM3D::AttributeMatrixType::Face);
QVector<size_t> cDims(1, 3);
tempPath.update(getSurfaceMeshDataContainerName(), getFaceAttributeMatrixName(), getFaceNormalsArrayName() );
m_FaceNormalsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<double>, AbstractFilter, double>(this, tempPath, 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FaceNormalsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FaceNormals = m_FaceNormalsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
int VertexGeom::writeXdmf(QTextStream& out, QString dcName, QString hdfFileName)
{
herr_t err = 0;
// Always start the grid
out << " <!-- *************** START OF " << dcName << " *************** -->" << "\n";
out << " <Grid Name=\"" << dcName << "\" GridType=\"Uniform\">" << "\n";
#if 0
DataArrayPath dap = getTemporalDataPath();
if(dap.isValid())
{
IDataArray::Pointer timeValues = getAttributeMatrix(dap.getAttributeMatrixName())->getAttributeArray(dap.getDataArrayName());
Int32ArrayType::Pointer timeValuePtr = boost::dynamic_pointer_cast<Int32ArrayType>(timeValues);
out << " <Time TimeType=\"Single\" Value=\"" << timeValuePtr->getValue(0) << "\"/>\n";
}
#endif
out << " <Topology TopologyType=\"Polyvertex\" NumberOfElements=\"" << getNumberOfVertices() << "\">" << "\n";
out << " <DataItem Format=\"HDF\" NumberType=\"Int\" Dimensions=\"" << getNumberOfVertices() << "\">" << "\n";
out << " " << hdfFileName << ":/DataContainers/" << dcName << "/" << DREAM3D::Geometry::Geometry << "/" << "Verts" << "\n";
out << " </DataItem>" << "\n";
out << " </Topology>" << "\n";
out << " <Geometry Type=\"XYZ\">" << "\n";
out << " <DataItem Format=\"HDF\" Dimensions=\"" << getNumberOfVertices() << " 3\" NumberType=\"Float\" Precision=\"4\">" << "\n";
out << " " << hdfFileName << ":/DataContainers/" << dcName << "/" << DREAM3D::Geometry::Geometry << "/" << DREAM3D::Geometry::SharedVertexList << "\n";
out << " </DataItem>" << "\n";
out << " </Geometry>" << "\n";
out << "" << "\n";
return err;
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void RegularGridSampleSurfaceMesh::dataCheck()
{
setErrorCondition(0);
DataArrayPath tempPath;
DataContainer::Pointer m = getDataContainerArray()->createNonPrereqDataContainer<AbstractFilter>(this, getDataContainerName());
if (getErrorCondition() < 0) { return; }
ImageGeom::Pointer image = ImageGeom::CreateGeometry(DREAM3D::Geometry::ImageGeometry);
m->setGeometry(image);
// Set the Dimensions, Resolution and Origin of the output data container
m->getGeometryAs<ImageGeom>()->setDimensions(m_XPoints, m_YPoints, m_ZPoints);
m->getGeometryAs<ImageGeom>()->setResolution(m_Resolution.x, m_Resolution.y, m_Resolution.z);
m->getGeometryAs<ImageGeom>()->setOrigin(m_Origin.x, m_Origin.y, m_Origin.z);
QVector<size_t> tDims(3, 0);
tDims[0] = m_XPoints;
tDims[1] = m_YPoints;
tDims[2] = m_ZPoints;
AttributeMatrix::Pointer cellAttrMat = m->createNonPrereqAttributeMatrix<AbstractFilter>(this, getCellAttributeMatrixName(), tDims, DREAM3D::AttributeMatrixType::Cell);
if (getErrorCondition() < 0 || NULL == cellAttrMat.get()) { return; }
QVector<size_t> cDims(1, 1);
tempPath.update(getDataContainerName(), getCellAttributeMatrixName(), getFeatureIdsArrayName() );
m_FeatureIdsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter, int32_t>(this, tempPath, 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureIds = m_FeatureIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void GenerateFaceMisorientationColoring::dataCheckSurfaceMesh()
{
setErrorCondition(0);
DataArrayPath tempPath;
TriangleGeom::Pointer triangles = getDataContainerArray()->getPrereqGeometryFromDataContainer<TriangleGeom, AbstractFilter>(this, m_SurfaceMeshFaceLabelsArrayPath.getDataContainerName());
QVector<IDataArray::Pointer> dataArrays;
if(getErrorCondition() >= 0) { dataArrays.push_back(triangles->getTriangles()); }
QVector<size_t> cDims(1, 2);
m_SurfaceMeshFaceLabelsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getSurfaceMeshFaceLabelsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_SurfaceMeshFaceLabelsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_SurfaceMeshFaceLabels = m_SurfaceMeshFaceLabelsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrays.push_back(m_SurfaceMeshFaceLabelsPtr.lock()); }
cDims[0] = 3;
tempPath.update(m_SurfaceMeshFaceLabelsArrayPath.getDataContainerName(), m_SurfaceMeshFaceLabelsArrayPath.getAttributeMatrixName(), getSurfaceMeshFaceMisorientationColorsArrayName() );
m_SurfaceMeshFaceMisorientationColorsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<float>, AbstractFilter, float>(this, tempPath, 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_SurfaceMeshFaceMisorientationColorsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_SurfaceMeshFaceMisorientationColors = m_SurfaceMeshFaceMisorientationColorsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
getDataContainerArray()->validateNumberOfTuples<AbstractFilter>(this, dataArrays);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void EstablishShapeTypes::dataCheck()
{
setErrorCondition(0);
DataArrayPath tempPath;
DataContainerArray::Pointer dca = getDataContainerArray();
QVector<size_t> cDims(1, 1);
m_PhaseTypesPtr = dca->getPrereqArrayFromPath<DataArray<uint32_t>, AbstractFilter>(this, getInputPhaseTypesArrayPath(), cDims);
if( NULL != m_PhaseTypesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_PhaseTypes = m_PhaseTypesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
// Get the DataContainer first - same as phase types
DataContainer::Pointer m = dca->getPrereqDataContainer<AbstractFilter>(this, getInputPhaseTypesArrayPath().getDataContainerName());
if(getErrorCondition() < 0) { return; }
// Now get the AttributeMatrix that the user wants to use to store the ShapeTypes array - same as phase types
AttributeMatrix::Pointer cellEnsembleAttrMat = m->getPrereqAttributeMatrix<AbstractFilter>(this, getInputPhaseTypesArrayPath().getAttributeMatrixName(), -990);
if(getErrorCondition() < 0 || NULL == cellEnsembleAttrMat.get()) { return; }
// Now create the output Shape Types Array
tempPath.update(getInputPhaseTypesArrayPath().getDataContainerName(), getInputPhaseTypesArrayPath().getAttributeMatrixName(), getShapeTypesArrayName() );
m_ShapeTypesPtr = getDataContainerArray()->createNonPrereqArrayFromPath<UInt32ArrayType, AbstractFilter>(this, tempPath, true, cDims); /* Assigns the shared_ptr<>(this, tempPath, true, dims); Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_ShapeTypesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_ShapeTypes = m_ShapeTypesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void ConvertOrientations::execute()
{
setErrorCondition(0);
dataCheck();
if(getErrorCondition() < 0) { return; }
IDataArray::Pointer iDataArrayPtr = getDataContainerArray()->getPrereqIDataArrayFromPath<IDataArray, AbstractFilter>(this, getInputOrientationArrayPath());
DataArrayPath outputArrayPath = getInputOrientationArrayPath();
outputArrayPath.setDataArrayName(getOutputOrientationArrayName());
FloatArrayType::Pointer fArray = std::dynamic_pointer_cast<FloatArrayType>(iDataArrayPtr);
if(NULL != fArray.get())
{
QVector<int32_t> componentCounts = OrientationConverter<float>::GetComponentCounts();
QVector<size_t> outputCDims(1, componentCounts[getOutputType()]);
FloatArrayType::Pointer outData = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, outputArrayPath, outputCDims);
generateRepresentation<float>(this, fArray, outData);
}
DoubleArrayType::Pointer dArray = std::dynamic_pointer_cast<DoubleArrayType>(iDataArrayPtr);
if(NULL != dArray.get())
{
QVector<int32_t> componentCounts = OrientationConverter<double>::GetComponentCounts();
QVector<size_t> outputCDims(1, componentCounts[getOutputType()]);
DoubleArrayType::Pointer outData = getDataContainerArray()->getPrereqArrayFromPath<DataArray<double>, AbstractFilter>(this, outputArrayPath, outputCDims);
generateRepresentation<double>(this, dArray, outData);
}
notifyStatusMessage(getHumanLabel(), "Complete");
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FlattenImage::dataCheck()
{
setErrorCondition(0);
DataArrayPath tempPath;
int32_t numImageComp = 1;
IDataArray::Pointer iDataArray = getDataContainerArray()->getPrereqIDataArrayFromPath<IDataArray, AbstractFilter>(this, getImageDataArrayPath());
if (getErrorCondition() < 0) { return; }
if (NULL != iDataArray.get())
{
numImageComp = iDataArray->getNumberOfComponents();
}
QVector<size_t> cDims(1, numImageComp);
m_ImageDataPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<uint8_t>, AbstractFilter>(this, getImageDataArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_ImageDataPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_ImageData = m_ImageDataPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
cDims[0] = 1;
tempPath.update(m_ImageDataArrayPath.getDataContainerName(), m_ImageDataArrayPath.getAttributeMatrixName(), getFlatImageDataArrayName() );
m_FlatImageDataPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<uint8_t>, AbstractFilter, uint8_t>(this, tempPath, 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FlatImageDataPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FlatImageData = m_FlatImageDataPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void JumbleOrientations::dataCheck()
{
setErrorCondition(0);
DataArrayPath tempPath;
QVector<size_t> cDims(1, 1);
// Cell Data
m_FeatureIdsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getFeatureIdsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureIds = m_FeatureIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
cDims[0] = 3;
tempPath.update(getFeatureIdsArrayPath().getDataContainerName(), getFeatureIdsArrayPath().getAttributeMatrixName(), getCellEulerAnglesArrayName() );
m_CellEulerAnglesPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, tempPath, 0.0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CellEulerAnglesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CellEulerAngles = m_CellEulerAnglesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
// Feature Data
cDims[0] = 1;
m_FeaturePhasesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getFeaturePhasesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeaturePhasesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeaturePhases = m_FeaturePhasesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
cDims[0] = 3;
m_FeatureEulerAnglesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getFeatureEulerAnglesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureEulerAnglesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureEulerAngles = m_FeatureEulerAnglesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
cDims[0] = 4;
tempPath.update(getFeaturePhasesArrayPath().getDataContainerName(), getFeaturePhasesArrayPath().getAttributeMatrixName(), getAvgQuatsArrayName() );
m_AvgQuatsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<float>, AbstractFilter, float>(this, tempPath, 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_AvgQuatsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_AvgQuats = m_AvgQuatsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void MultiEmmpmFilter::execute()
{
setErrorCondition(0);
dataCheck();
if (getErrorCondition() < 0) { return; }
DataArrayPath inputAMPath = DataArrayPath::GetAttributeMatrixPath(getInputDataArrayVector());
QList<QString> arrayNames = DataArrayPath::GetDataArrayNames(getInputDataArrayVector());
QListIterator<QString> iter(arrayNames);
QString msgPrefix = getMessagePrefix();
int32_t i = 1;
// This is the routine that sets up the EM/MPM to segment the image
while (iter.hasNext())
{
DataArrayPath arrayPath = inputAMPath;
QString name = iter.next();
arrayPath.setDataArrayName(name);
setInputDataArrayPath(arrayPath);
// Change the output AttributeMatrix
arrayPath.setAttributeMatrixName(getOutputAttributeMatrixName());
QString outName = getOutputArrayPrefix() + arrayPath.getDataArrayName();
arrayPath.setDataArrayName(outName);
// Remove the array if it already exists ; this would be very strange but check for it anyway
getDataContainerArray()->getAttributeMatrix(arrayPath)->removeAttributeArray(outName);
setOutputDataArrayPath(arrayPath);
QString prefix = QObject::tr("%1 (Array %2 of %3)").arg(msgPrefix).arg(i).arg(arrayNames.size());
setMessagePrefix(prefix);
if ( i == 2 && getUsePreviousMuSigma())
{
setEmmpmInitType(EMMPM_ManualInit);
}
else
{
setEmmpmInitType(EMMPM_Basic);
}
EMMPMFilter::execute();
if (getErrorCondition() < 0) { break; }
i++;
if (getCancel()) { break; }
}
if (getErrorCondition() < 0)
{
QString ss = QObject::tr("Error occurred running the EM/MPM algorithm");
setErrorCondition(-60009);
notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
return;
}
/* Let the GUI know we are done with this filter */
notifyStatusMessage(getHumanLabel(), "Complete");
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void MergeTwins::dataCheck()
{
setErrorCondition(0);
DataArrayPath tempPath;
GroupFeatures::dataCheck();
if(getErrorCondition() < 0) { return; }
DataContainer::Pointer m = getDataContainerArray()->getPrereqDataContainer<AbstractFilter>(this, m_FeatureIdsArrayPath.getDataContainerName(), false);
if(getErrorCondition() < 0 || NULL == m.get()) { return; }
QVector<size_t> tDims(1, 0);
m->createNonPrereqAttributeMatrix<AbstractFilter>(this, getNewCellFeatureAttributeMatrixName(), tDims, DREAM3D::AttributeMatrixType::CellFeature);
QVector<size_t> cDims(1, 1);
QVector<DataArrayPath> dataArrayPaths;
// Cell Data
m_FeatureIdsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getFeatureIdsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureIds = m_FeatureIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
tempPath.update(m_FeatureIdsArrayPath.getDataContainerName(), m_FeatureIdsArrayPath.getAttributeMatrixName(), getCellParentIdsArrayName() );
m_CellParentIdsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter, int32_t>(this, tempPath, -1, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CellParentIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CellParentIds = m_CellParentIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
// Feature Data
m_FeaturePhasesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getFeaturePhasesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeaturePhasesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeaturePhases = m_FeaturePhasesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getFeaturePhasesArrayPath()); }
tempPath.update(m_FeaturePhasesArrayPath.getDataContainerName(), m_FeaturePhasesArrayPath.getAttributeMatrixName(), getFeatureParentIdsArrayName() );
m_FeatureParentIdsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter, int32_t>(this, tempPath, -1, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureParentIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureParentIds = m_FeatureParentIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
cDims[0] = 4;
m_AvgQuatsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getAvgQuatsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_AvgQuatsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_AvgQuats = m_AvgQuatsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getAvgQuatsArrayPath()); }
// New Feature Data
cDims[0] = 1;
tempPath.update(m_FeatureIdsArrayPath.getDataContainerName(), getNewCellFeatureAttributeMatrixName(), getActiveArrayName() );
m_ActivePtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<bool>, AbstractFilter, bool>(this, tempPath, true, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_ActivePtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_Active = m_ActivePtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
// Ensemble Data
m_CrystalStructuresPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<unsigned int>, AbstractFilter>(this, getCrystalStructuresArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CrystalStructuresPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CrystalStructures = m_CrystalStructuresPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
getDataContainerArray()->validateNumberOfTuples<AbstractFilter>(this, dataArrayPaths);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void MoveData::dataCheck()
{
setErrorCondition(0);
DataArrayPath amSrcPath = getAttributeMatrixSource();
DataArrayPath amDestPath = getAttributeMatrixDestination();
DataArrayPath daSrcPath = getDataArraySource();
if (getWhatToMove() == k_MoveAttributeMatrix)
{
DataContainer::Pointer amDestDataContainer = getDataContainerArray()->getPrereqDataContainer<AbstractFilter>(this, getDataContainerDestination());
DataContainer::Pointer amSrcDataContainer = getDataContainerArray()->getPrereqDataContainer<AbstractFilter>(this, amSrcPath.getDataContainerName());
AttributeMatrix::Pointer amSrcAttributeMatrix = getDataContainerArray()->getPrereqAttributeMatrixFromPath<AbstractFilter>(this, amSrcPath, -301);
if(getErrorCondition() < 0) { return; }
if (amSrcDataContainer->getName() == amDestDataContainer->getName())
{
QString ss = QObject::tr("The source and destination Data Container are the same. Is this what you meant to do?");
notifyWarningMessage(getHumanLabel(), ss, getErrorCondition());
return;
}
amDestDataContainer->addAttributeMatrix(amSrcAttributeMatrix->getName(), amSrcAttributeMatrix);
amSrcDataContainer->removeAttributeMatrix(amSrcAttributeMatrix->getName());
}
else if (getWhatToMove() == k_MoveDataArray )
{
AttributeMatrix::Pointer daSrcAttributeMatrix = getDataContainerArray()->getPrereqAttributeMatrixFromPath<AbstractFilter>(this, daSrcPath, -301);
AttributeMatrix::Pointer daDestAttributeMatrix = getDataContainerArray()->getPrereqAttributeMatrixFromPath<AbstractFilter>(this, amDestPath, -301);
IDataArray::Pointer daSrcDataArray = getDataContainerArray()->getPrereqIDataArrayFromPath<IDataArray, AbstractFilter>(this, daSrcPath);
if(getErrorCondition() < 0) { return; }
if (daDestAttributeMatrix->getNumTuples() != daSrcDataArray->getNumberOfTuples())
{
setErrorCondition(-11019);
QString ss = QObject::tr("The number of tuples of source Attribute Array (%1) and destination Attribute Matrix (%2) do not match").arg(daSrcDataArray->getNumberOfTuples()).arg(daDestAttributeMatrix->getNumTuples());
notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
return;
}
else if (amSrcPath == amDestPath)
{
QString ss = QObject::tr("The source and destination Attribute Matrix are the same. Is this what you meant to do?");
notifyWarningMessage(getHumanLabel(), ss, getErrorCondition());
return;
}
daDestAttributeMatrix->addAttributeArray(daSrcPath.getDataArrayName(), daSrcDataArray);
daSrcAttributeMatrix->removeAttributeArray(daSrcPath.getDataArrayName());
}
else
{
setErrorCondition(-11020);
QString ss = QObject::tr("Neither an Attribute Matrix nor an Attribute Array was selected to be moved");
notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
return;
}
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void EBSDSegmentFeatures::dataCheck()
{
setErrorCondition(0);
DataArrayPath tempPath;
SegmentFeatures::dataCheck();
if(getErrorCondition() < 0) { return; }
// Set the DataContainerName for the Parent Class (SegmentFeatures) to Use
setDataContainerName(m_QuatsArrayPath.getDataContainerName());
DataContainer::Pointer m = getDataContainerArray()->getPrereqDataContainer<AbstractFilter>(this, getDataContainerName(), false);
if(getErrorCondition() < 0 || NULL == m.get()) { return; }
QVector<size_t> tDims(1, 0);
m->createNonPrereqAttributeMatrix<AbstractFilter>(this, getCellFeatureAttributeMatrixName(), tDims, DREAM3D::AttributeMatrixType::CellFeature);
QVector<DataArrayPath> dataArrayPaths;
QVector<size_t> cDims(1, 1);
if(m_UseGoodVoxels == true)
{
m_GoodVoxelsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<bool>, AbstractFilter>(this, getGoodVoxelsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_GoodVoxelsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_GoodVoxels = m_GoodVoxelsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getGoodVoxelsArrayPath()); }
}
m_CellPhasesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getCellPhasesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CellPhasesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CellPhases = m_CellPhasesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getCellPhasesArrayPath()); }
tempPath.update(getDataContainerName(), m_QuatsArrayPath.getAttributeMatrixName(), getFeatureIdsArrayName() );
m_FeatureIdsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter, int32_t>(this, tempPath, 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureIds = m_FeatureIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
tempPath.update(getDataContainerName(), getCellFeatureAttributeMatrixName(), getActiveArrayName() );
m_ActivePtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<bool>, AbstractFilter, bool>(this, tempPath, true, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_ActivePtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_Active = m_ActivePtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
m_CrystalStructuresPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<uint32_t>, AbstractFilter>(this, getCrystalStructuresArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CrystalStructuresPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CrystalStructures = m_CrystalStructuresPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
cDims[0] = 4;
m_QuatsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getQuatsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_QuatsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_Quats = m_QuatsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getQuatsArrayPath()); }
getDataContainerArray()->validateNumberOfTuples<AbstractFilter>(this, dataArrayPaths);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void ConvertOrientations::dataCheck()
{
setErrorCondition(0);
if(getInputType() == getOutputType())
{
QString ss = QObject::tr("Input and output orientation representation types must be different");
setErrorCondition(-1000);
notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
}
if( getInputType() < OrientationConverter<float>::GetMinIndex() || getInputType() > OrientationConverter<float>::GetMaxIndex() )
{
QString ss = QObject::tr("There was an error with teh selection of the input orientation type. The valid values range from 0 to %1").arg(OrientationConverter<float>::GetMaxIndex());
setErrorCondition(-1001);
notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
}
if( getOutputType() < OrientationConverter<float>::GetMinIndex() || getOutputType() > OrientationConverter<float>::GetMaxIndex() )
{
QString ss = QObject::tr("There was an error with the selection of the output orientation type. The valid values range from 0 to %1").arg(OrientationConverter<float>::GetMaxIndex());
setErrorCondition(-1002);
notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
}
// We need to return NOW because the next lines assume we have and index that is within
// the valid bounds
if(getErrorCondition() < 0) { return; }
// Figure out what kind of Array the user selected
// Get the input data and create the output Data appropriately
IDataArray::Pointer iDataArrayPtr = getDataContainerArray()->getPrereqIDataArrayFromPath<IDataArray, AbstractFilter>(this, getInputOrientationArrayPath());
DataArrayPath outputArrayPath = getInputOrientationArrayPath();
outputArrayPath.setDataArrayName(getOutputOrientationArrayName());
FloatArrayType::Pointer fArray = std::dynamic_pointer_cast<FloatArrayType>(iDataArrayPtr);
if(NULL != fArray.get())
{
QVector<int32_t> componentCounts = OrientationConverter<float>::GetComponentCounts();
QVector<size_t> outputCDims(1, componentCounts[getOutputType()]);
getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<float>, AbstractFilter, float>(this, outputArrayPath, 0, outputCDims);
}
DoubleArrayType::Pointer dArray = std::dynamic_pointer_cast<DoubleArrayType>(iDataArrayPtr);
if(NULL != dArray.get())
{
QVector<int32_t> componentCounts = OrientationConverter<double>::GetComponentCounts();
QVector<size_t> outputCDims(1, componentCounts[getOutputType()]);
getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<double>, AbstractFilter, double>(this, outputArrayPath, 0, outputCDims);
}
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void GrayToRGB::dataCheck()
{
setErrorCondition(0);
DataArrayPath tempPath;
//check for required arrays
QVector<size_t> compDims(1, 1);
m_RedPtr = TemplateHelpers::GetPrereqArrayFromPath<AbstractFilter>()(this, getRedArrayPath(), compDims);
if(NULL != m_RedPtr.lock().get())
{
m_Red = m_RedPtr.lock().get();
}
m_GreenPtr = TemplateHelpers::GetPrereqArrayFromPath<AbstractFilter>()(this, getGreenArrayPath(), compDims);
if(NULL != m_GreenPtr.lock().get())
{
m_Green = m_GreenPtr.lock().get();
}
m_BluePtr = TemplateHelpers::GetPrereqArrayFromPath<AbstractFilter>()(this, getBlueArrayPath(), compDims);
if(NULL != m_BluePtr.lock().get())
{
m_Blue = m_BluePtr.lock().get();
}
//configured created name / location
tempPath.update(getRedArrayPath().getDataContainerName(), getRedArrayPath().getAttributeMatrixName(), getNewCellArrayName() );
DataContainer::Pointer redDC = getDataContainerArray()->getPrereqDataContainer<AbstractFilter>(this, getRedArrayPath().getDataContainerName() );
if(getErrorCondition() < 0) {
return;
}
AttributeMatrix::Pointer redAM = redDC->getPrereqAttributeMatrix<AbstractFilter>(this, getRedArrayPath().getAttributeMatrixName(), 80000);
if(getErrorCondition() < 0) {
return;
}
IDataArray::Pointer redArrayptr = redAM->getPrereqIDataArray<IDataArray, AbstractFilter>(this, getRedArrayPath().getDataArrayName(), 80000);
if(getErrorCondition() < 0) {
return;
}
ImageGeom::Pointer image = redDC->getPrereqGeometry<ImageGeom, AbstractFilter>(this);
if(getErrorCondition() < 0 || NULL == image.get()) {
return;
}
//create new array of same type
compDims[0] = 3;
m_NewCellArrayPtr = TemplateHelpers::CreateNonPrereqArrayFromArrayType()(this, tempPath, compDims, redArrayptr);
if( NULL != m_NewCellArrayPtr.lock().get() )
{
m_NewCellArray = m_NewCellArrayPtr.lock()->getVoidPointer(0);
}
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindEllipsoidError::dataCheck()
{
DataArrayPath tempPath;
setErrorCondition(0);
QVector<size_t> dims(1, 1);
m_FeatureIdsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getFeatureIdsArrayPath(), dims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureIds = m_FeatureIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() < 0) { return; }
ImageGeom::Pointer image = getDataContainerArray()->getDataContainer(getFeatureIdsArrayPath().getDataContainerName())->getPrereqGeometry<ImageGeom, AbstractFilter>(this);
if(getErrorCondition() < 0 || NULL == image.get()) { return; }
dims[0] = 3;
m_CentroidsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getCentroidsArrayPath(), dims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CentroidsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_Centroids = m_CentroidsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
dims[0] = 3;
m_AxisEulerAnglesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getAxisEulerAnglesArrayPath(), dims);
if( NULL != m_AxisEulerAnglesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_AxisEulerAngles = m_AxisEulerAnglesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
dims[0] = 3;
m_AxisLengthsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getAxisLengthsArrayPath(), dims);
if( NULL != m_AxisLengthsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_AxisLengths = m_AxisLengthsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
dims[0] = 1;
m_NumCellsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getNumCellsArrayPath(), dims);
if( NULL != m_NumCellsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_NumCells = m_NumCellsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if (m_WriteIdealEllipseFeatureIds == true)
{
dims[0] = 1;
tempPath.update(m_FeatureIdsArrayPath.getDataContainerName(), m_FeatureIdsArrayPath.getAttributeMatrixName(), getIdealFeatureIdsArrayName() );
m_IdealFeatureIdsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter, int32_t>(this, tempPath, 0, dims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_IdealFeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_IdealFeatureIds = m_IdealFeatureIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
}
dims[0] = 1;
tempPath.update(m_NumCellsArrayPath.getDataContainerName(), m_NumCellsArrayPath.getAttributeMatrixName(), getEllipsoidErrorArrayName() );
m_EllipsoidErrorPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<float>, AbstractFilter, float>(this, tempPath, 0, dims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_EllipsoidErrorPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_EllipsoidError = m_EllipsoidErrorPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
int H5FilterParametersWriter::writeValue(const QString name, const QVector<DataArrayPath>& v)
{
int err = 0;
QString pathStr;
QTextStream ss(&pathStr);
char sep = '\n'; // Use a new line to separate each record.
for (int i = 0; i < v.size(); i++)
{
DataArrayPath path = v.at(i);
ss << path.serialize("|") << sep;
}
err = QH5Lite::writeStringDataset(m_CurrentGroupId, name, pathStr);
return err;
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindFeatureReferenceCAxisMisorientations::dataCheck()
{
setErrorCondition(0);
DataArrayPath tempPath;
getDataContainerArray()->getPrereqGeometryFromDataContainer<ImageGeom, AbstractFilter>(this, getFeatureIdsArrayPath().getDataContainerName());
QVector<DataArrayPath> dataArrayPaths;
QVector<size_t> cDims(1, 1);
m_FeatureIdsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getFeatureIdsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureIds = m_FeatureIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getFeatureIdsArrayPath()); }
m_CellPhasesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getCellPhasesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CellPhasesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CellPhases = m_CellPhasesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getCellPhasesArrayPath()); }
tempPath.update(m_AvgCAxesArrayPath.getDataContainerName(), getAvgCAxesArrayPath().getAttributeMatrixName(), getFeatureAvgCAxisMisorientationsArrayName() );
m_FeatureAvgCAxisMisorientationsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<float>, AbstractFilter, float>(this, tempPath, 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureAvgCAxisMisorientationsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureAvgCAxisMisorientations = m_FeatureAvgCAxisMisorientationsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
tempPath.update(m_AvgCAxesArrayPath.getDataContainerName(), getAvgCAxesArrayPath().getAttributeMatrixName(), getFeatureStdevCAxisMisorientationsArrayName() );
m_FeatureStdevCAxisMisorientationsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<float>, AbstractFilter, float>(this, tempPath, 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureStdevCAxisMisorientationsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureStdevCAxisMisorientations = m_FeatureStdevCAxisMisorientationsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
tempPath.update(m_FeatureIdsArrayPath.getDataContainerName(), getFeatureIdsArrayPath().getAttributeMatrixName(), getFeatureReferenceCAxisMisorientationsArrayName() );
m_FeatureReferenceCAxisMisorientationsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<float>, AbstractFilter, float>(this, tempPath, 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureReferenceCAxisMisorientationsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureReferenceCAxisMisorientations = m_FeatureReferenceCAxisMisorientationsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
cDims[0] = 3;
m_AvgCAxesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getAvgCAxesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_AvgCAxesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_AvgCAxes = m_AvgCAxesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
cDims[0] = 4;
m_QuatsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getQuatsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_QuatsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_Quats = m_QuatsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getQuatsArrayPath()); }
getDataContainerArray()->validateNumberOfTuples<AbstractFilter>(this, dataArrayPaths);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void GenerateMisorientationColors::dataCheck()
{
setErrorCondition(0);
DataArrayPath tempPath;
QVector<DataArrayPath> dataArrayPaths;
QVector<size_t> cDims(1, 1);
m_CellPhasesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getCellPhasesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CellPhasesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CellPhases = m_CellPhasesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getCellPhasesArrayPath()); }
cDims[0] = 4;
m_QuatsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getQuatsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_QuatsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_Quats = m_QuatsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getQuatsArrayPath()); }
cDims[0] = 1;
m_CrystalStructuresPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<uint32_t>, AbstractFilter>(this, getCrystalStructuresArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CrystalStructuresPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CrystalStructures = m_CrystalStructuresPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
cDims[0] = 3;
tempPath.update(getCellPhasesArrayPath().getDataContainerName(), getCellPhasesArrayPath().getAttributeMatrixName(), getMisorientationColorArrayName() );
m_MisorientationColorPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<uint8_t>, AbstractFilter, uint8_t>(this, tempPath, 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_MisorientationColorPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_MisorientationColor = m_MisorientationColorPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
// The good voxels array is optional, If it is available we are going to use it, otherwise we are going to create it
cDims[0] = 1;
if (getUseGoodVoxels() == true)
{
// The good voxels array is optional, If it is available we are going to use it, otherwise we are going to create it
cDims[0] = 1;
m_GoodVoxelsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<bool>, AbstractFilter>(this, getGoodVoxelsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_GoodVoxelsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_GoodVoxels = m_GoodVoxelsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getGoodVoxelsArrayPath()); }
}
else
{
m_GoodVoxels = NULL;
}
getDataContainerArray()->validateNumberOfTuples<AbstractFilter>(this, dataArrayPaths);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
int QFilterParametersWriter::writeValue(const QString name, const DataArrayPath& v)
{
int err = 0;
QString value = v.serialize();
m_Prefs->setValue(name, value );
return err;
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
int H5FilterParametersWriter::writeValue(const QString name, const DataArrayPath& v)
{
int err = 0;
QString value = v.serialize();
err = QH5Lite::writeStringDataset(m_CurrentGroupId, name, value);
return err;
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindFeatureClustering::dataCheck()
{
setErrorCondition(0);
initialize();
getDataContainerArray()->getPrereqGeometryFromDataContainer<ImageGeom, AbstractFilter>(this, getEquivalentDiametersArrayPath().getDataContainerName());
DataArrayPath tempPath;
QVector<size_t> cDims(1, 1);
m_EquivalentDiametersPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getEquivalentDiametersArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_EquivalentDiametersPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_EquivalentDiameters = m_EquivalentDiametersPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
m_FeaturePhasesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getFeaturePhasesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeaturePhasesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeaturePhases = m_FeaturePhasesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
cDims[0] = 3;
m_CentroidsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getCentroidsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CentroidsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_Centroids = m_CentroidsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if (m_RemoveBiasedFeatures == true)
{
cDims[0] = 1;
m_BiasedFeaturesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<bool>, AbstractFilter>(this, getBiasedFeaturesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_BiasedFeaturesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_BiasedFeatures = m_BiasedFeaturesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
}
cDims[0] = m_NumberOfBins;
tempPath.update(getCellEnsembleAttributeMatrixName().getDataContainerName(), getCellEnsembleAttributeMatrixName().getAttributeMatrixName(), getNewEnsembleArrayArrayName() );
m_NewEnsembleArrayPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, tempPath, 0, cDims); /* Assigns the shared_ptr<>(this, tempPath, 0, dims); Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_NewEnsembleArrayPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_NewEnsembleArray = m_NewEnsembleArrayPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
cDims[0] = 2;
tempPath.update(getCellEnsembleAttributeMatrixName().getDataContainerName(), getCellEnsembleAttributeMatrixName().getAttributeMatrixName(), getMaxMinArrayName() );
m_MaxMinArrayPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, tempPath, 0, cDims);
if( NULL != m_MaxMinArrayPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_MaxMinArray = m_MaxMinArrayPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
cDims[0] = 1;
tempPath.update(getFeaturePhasesArrayPath().getDataContainerName(), getFeaturePhasesArrayPath().getAttributeMatrixName(), getClusteringListArrayName() );
m_ClusteringList = getDataContainerArray()->createNonPrereqArrayFromPath<NeighborList<float>, AbstractFilter, float>(this, tempPath, 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void RGBToGray::dataCheck()
{
setErrorCondition(0);
DataArrayPath tempPath = getSelectedCellArrayArrayPath();
//check for required arrays
QVector<size_t> compDims(1, 3);
m_SelectedCellArrayPtr = TemplateHelpers::GetPrereqArrayFromPath<AbstractFilter>()(this, tempPath, compDims);
if(NULL != m_SelectedCellArrayPtr.lock().get())
{
m_SelectedCellArray = m_SelectedCellArrayPtr.lock().get();
}
else // Something went wrong because that should have worked. Bail out now.
{
return;
}
#if 0
//get type
QString typeName = getDataContainerArray()->getDataContainer(getSelectedCellArrayArrayPath().getDataContainerName())->getAttributeMatrix(getSelectedCellArrayArrayPath().getAttributeMatrixName())->getAttributeArray(getSelectedCellArrayArrayPath().getDataArrayName())->getTypeAsString();;
int type = TemplateUtilities::getTypeFromTypeName(typeName);
//create new array of same type
dims[0] = 1;
TEMPLATE_CREATE_NONPREREQ_ARRAY(NewCellArray, tempPath, dims, type);
#endif
DataContainer::Pointer dc = getDataContainerArray()->getPrereqDataContainer<AbstractFilter>(this, getSelectedCellArrayArrayPath().getDataContainerName() );
if(getErrorCondition() < 0) { return; }
AttributeMatrix::Pointer am = dc->getPrereqAttributeMatrix<AbstractFilter>(this, getSelectedCellArrayArrayPath().getAttributeMatrixName(), 80000);
if(getErrorCondition() < 0) { return; }
IDataArray::Pointer data = am->getPrereqIDataArray<IDataArray, AbstractFilter>(this, getSelectedCellArrayArrayPath().getDataArrayName(), 80000);
if(getErrorCondition() < 0) { return; }
ImageGeom::Pointer image = dc->getPrereqGeometry<ImageGeom, AbstractFilter>(this);
if(getErrorCondition() < 0 || NULL == image.get()) { return; }
compDims[0] = 1;
//configured created name / location
tempPath.setDataArrayName(getNewCellArrayName());
m_NewCellArrayPtr = TemplateHelpers::CreateNonPrereqArrayFromArrayType()(this, tempPath, compDims, data);
if( NULL != m_NewCellArrayPtr.lock().get() )
{
m_NewCellArray = m_NewCellArrayPtr.lock()->getVoidPointer(0);
}
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindGBCD::dataCheckSurfaceMesh()
{
setErrorCondition(0);
initialize();
DataArrayPath tempPath;
getDataContainerArray()->getPrereqGeometryFromDataContainer<TriangleGeom, AbstractFilter>(this, getSurfaceMeshFaceLabelsArrayPath().getDataContainerName());
DataContainer::Pointer sm = getDataContainerArray()->getPrereqDataContainer<AbstractFilter>(this, m_SurfaceMeshFaceLabelsArrayPath.getDataContainerName(), false);
if(getErrorCondition() < 0 || NULL == sm.get()) { return; }
QVector<size_t> tDims(1, m_CrystalStructuresPtr.lock()->getNumberOfTuples());
sm->createNonPrereqAttributeMatrix<AbstractFilter>(this, getFaceEnsembleAttributeMatrixName(), tDims, SIMPL::AttributeMatrixType::FaceEnsemble);
QVector<size_t> cDims(1, 2);
m_SurfaceMeshFaceLabelsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getSurfaceMeshFaceLabelsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_SurfaceMeshFaceLabelsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_SurfaceMeshFaceLabels = m_SurfaceMeshFaceLabelsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
cDims[0] = 3;
m_SurfaceMeshFaceNormalsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<double>, AbstractFilter>(this, getSurfaceMeshFaceNormalsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_SurfaceMeshFaceNormalsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_SurfaceMeshFaceNormals = m_SurfaceMeshFaceNormalsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
cDims[0] = 1;
m_SurfaceMeshFaceAreasPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<double>, AbstractFilter>(this, getSurfaceMeshFaceAreasArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_SurfaceMeshFaceAreasPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_SurfaceMeshFaceAreas = m_SurfaceMeshFaceAreasPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
// call the sizeGBCD function to get the GBCD ranges, dimensions, etc. Note that the input parameters do not affect the size and can be dummy values here;
sizeGBCD(0, 0);
cDims.resize(6);
cDims[0] = m_GbcdSizes[0];
cDims[1] = m_GbcdSizes[1];
cDims[2] = m_GbcdSizes[2];
cDims[3] = m_GbcdSizes[3];
cDims[4] = m_GbcdSizes[4];
cDims[5] = 2;
tempPath.update(m_SurfaceMeshFaceLabelsArrayPath.getDataContainerName(), getFaceEnsembleAttributeMatrixName(), getGBCDArrayName() );
m_GBCDPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<double>, AbstractFilter, double>(this, tempPath, 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_GBCDPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_GBCD = m_GBCDPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindBoundaryCells::dataCheck()
{
setErrorCondition(0);
DataArrayPath tempPath;
getDataContainerArray()->getPrereqGeometryFromDataContainer<ImageGeom, AbstractFilter>(this, getFeatureIdsArrayPath().getDataContainerName());
QVector<size_t> cDims(1, 1);
m_FeatureIdsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getFeatureIdsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureIds = m_FeatureIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
tempPath.update(getFeatureIdsArrayPath().getDataContainerName(), getFeatureIdsArrayPath().getAttributeMatrixName(), getBoundaryCellsArrayName() );
m_BoundaryCellsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<int8_t>, AbstractFilter, int8_t>(this, tempPath, 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_BoundaryCellsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_BoundaryCells = m_BoundaryCellsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void GenerateFaceSchuhMisorientationColoring::dataCheckSurfaceMesh()
{
DataArrayPath tempPath;
setErrorCondition(0);
DataContainer::Pointer sm = getDataContainerArray()->getPrereqDataContainer<AbstractFilter>(this, m_SurfaceMeshFaceLabelsArrayPath.getDataContainerName(), false);
if(getErrorCondition() < 0) { return; }
QVector<size_t> dims(1, 2);
m_SurfaceMeshFaceLabelsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getSurfaceMeshFaceLabelsArrayPath(), dims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_SurfaceMeshFaceLabelsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_SurfaceMeshFaceLabels = m_SurfaceMeshFaceLabelsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
dims[0] = 3;
tempPath.update(m_SurfaceMeshFaceLabelsArrayPath.getDataContainerName(), m_SurfaceMeshFaceLabelsArrayPath.getAttributeMatrixName(), getSurfaceMeshFaceSchuhMisorientationColorsArrayName() );
m_SurfaceMeshFaceSchuhMisorientationColorsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<uint8_t>, AbstractFilter, uint8_t>(this, tempPath, 0, dims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_SurfaceMeshFaceSchuhMisorientationColorsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_SurfaceMeshFaceSchuhMisorientationColors = m_SurfaceMeshFaceSchuhMisorientationColorsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindModulusMismatch::dataCheckSurfaceMesh()
{
DataArrayPath tempPath;
setErrorCondition(0);
DataContainer::Pointer sm = getDataContainerArray()->getPrereqDataContainer<AbstractFilter>(this, getSurfaceMeshFaceLabelsArrayPath().getDataContainerName());
if(getErrorCondition() < 0 || NULL == sm.get()) { return; }
QVector<size_t> dims(1, 2);
m_SurfaceMeshFaceLabelsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getSurfaceMeshFaceLabelsArrayPath(), dims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_SurfaceMeshFaceLabelsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_SurfaceMeshFaceLabels = m_SurfaceMeshFaceLabelsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
dims[0] = 1;
tempPath.update(m_SurfaceMeshFaceLabelsArrayPath.getDataContainerName(), m_SurfaceMeshFaceLabelsArrayPath.getAttributeMatrixName(), getSurfaceMeshDeltaModulusArrayName() );
m_SurfaceMeshDeltaModulusPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<float>, AbstractFilter, float>(this, tempPath, 180.0, dims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_SurfaceMeshDeltaModulusPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_SurfaceMeshDeltaModulus = m_SurfaceMeshDeltaModulusPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
}