// 输出网格到 VTK 文件
void MeshOpt::writeToVTK(hier::Patch<NDIM>& patch,
const double time,
const double dt,
const bool initial_time)
{
NULL_USE(dt);
NULL_USE(time);
NULL_USE(initial_time);
const tbox::Pointer< hier::BlockPatchGeometry<NDIM> > pgeom =
patch.getPatchGeometry();
int block_index = pgeom->getBlockNumber();
int patch_index = patch.getPatchNumber();
std::stringstream bi, pi, df;
bi << block_index;
pi << patch_index;
df << d_flag;
std::string file_name = df.str() + "_block_ " + bi.str()+ "_patch_" + pi.str() + ".vtk";
MsqError err;
MeshImpl * mesh = createLocalMesh(patch);
mesh->write_vtk(file_name.c_str(), err);
return;
}
// Test writing VTK unstructured mesh
void VtkTest::test_write()
{
MeshImpl mesh;
MsqPrintError err(cout);
// Create file containing unstructured mesh test case
FILE* file = fopen( temp_file_name, "w+" );
CPPUNIT_ASSERT(file);
int rval = fputs( mixed_unstructured_data, file );
fclose( file );
if (rval == EOF) remove(temp_file_name);
CPPUNIT_ASSERT(rval != EOF);
// Read unstructured mesh file
mesh.read_vtk( temp_file_name, err );
remove(temp_file_name);
ASSERT_NO_ERROR(err);
// Write unstructured mesh file back out
mesh.write_vtk( temp_file_name, err );
if (err) remove( temp_file_name );
ASSERT_NO_ERROR(err);
// Check if file contained expected mesh
test_read_unstructured( temp_file_name );
remove( temp_file_name );
}
int main( int argc, char* argv[] )
{
parse_options( argv, argc );
MeshImpl mesh;
XYRectangle domain( max_x - min_x, max_y - min_y, min_x, min_y );
MsqError err;
create_input_mesh( input_x, mesh, err );
if (MSQ_CHKERR(err)) { std::cerr << err << std::endl; return 2; }
domain.setup( &mesh, err );
if (MSQ_CHKERR(err)) { std::cerr << err << std::endl; return 2; }
QualityMetric* metric = 0;
if (mMetric == 'c')
metric = new ConditionNumberQualityMetric;
else
metric = new IdealWeightInverseMeanRatio;
LPtoPTemplate function( 1, metric );
VertexMover* solver = 0;
if (mSolver == 'j')
solver = new ConjugateGradient( &function );
else
solver = new FeasibleNewton( &function );
if (PatchSetUser* psu = dynamic_cast<PatchSetUser*>(solver))
psu->use_global_patch();
TerminationCriterion inner;
inner.add_absolute_vertex_movement( 1e-4 );
inner.write_mesh_steps( "synchronous", TerminationCriterion::GNUPLOT );
solver->set_inner_termination_criterion( &inner );
InstructionQueue q;
QualityAssessor qa( metric, 10 );
q.add_quality_assessor( &qa, err );
q.set_master_quality_improver( solver, err );
q.add_quality_assessor( &qa, err );
MeshDomainAssoc mesh_and_domain = MeshDomainAssoc(&mesh, &domain);
q.run_instructions( &mesh_and_domain, err );
delete solver;
delete metric;
if (MSQ_CHKERR(err))
{ std::cerr << err << std::endl; return 3; }
mesh.write_vtk( outputFile, err );
if (MSQ_CHKERR(err))
{ std::cerr << err << std::endl; return 2; }
return 0;
}
void cond_write_file( MeshImpl& mesh, const char* filename )
{
if (filename) {
MsqPrintError err(std::cerr);
mesh.write_vtk( filename, err );
if (MSQ_CHKERR(err)) {
std::cerr << filename << ": failed to write file" << std::endl;
exit(1);
}
std::cout << "Wrote file: " << filename << std::endl;
}
}
int run_example( const Example& e, bool write_output_file )
{
MsqPrintError err(std::cerr);
MeshImpl mesh;
DomainClassifier domain;
HexLagrangeShape hex27;
std::cout << std::endl
<< "--------------------------------------------------------------------"
<< std::endl
<< e.desc << std::endl
<< "--------------------------------------------------------------------"
<< std::endl;
std::string name = e.func( domain, mesh, err );
if (MSQ_CHKERR(err)) return 2;
std::cout << "Loaded mesh from: " << name << std::endl;
UntangleWrapper untangler;
untangler.set_slaved_ho_node_mode( Settings::SLAVE_NONE );
untangler.set_mapping_function( &hex27 );
MeshDomainAssoc mesh_and_domain = MeshDomainAssoc(&mesh, &domain, false, true);
untangler.run_instructions( &mesh_and_domain, err );
if (MSQ_CHKERR(err)) return 1;
ShapeImprover smoother;
smoother.set_slaved_ho_node_mode( Settings::SLAVE_NONE );
smoother.set_mapping_function( &hex27 );
smoother.set_vertex_movement_limit_factor( 0.05 );
smoother.run_instructions( &mesh_and_domain, err );
if (MSQ_CHKERR(err)) return 1;
if (write_output_file) {
size_t idx = name.find( ".vtk" );
if (idx != std::string::npos) {
std::string newname( name.substr(0, idx) );
newname += ".out";
newname += name.substr(idx);
name.swap(newname);
}
else {
name += ".out";
}
mesh.write_vtk( name.c_str(), err ); MSQ_CHKERR(err);
std::cout << "Write mesh to file: " << name << std::endl;
}
return smoother.quality_assessor().invalid_elements();
}
// Test writing quadtratic elements
void VtkTest::test_write_field_attrib()
{
MeshImpl mesh;
MsqPrintError err(cout);
// Create file containing unstructured mesh test case
FILE* file = fopen( temp_file_name, "w+" );
fputs( structured_3d_points_data, file );
fputs( simple_field_attrib, file );
fclose( file );
// Read unstructured mesh file
mesh.read_vtk( temp_file_name, err );
remove(temp_file_name);
ASSERT_NO_ERROR(err);
// Write unstructured mesh file back out
mesh.write_vtk( temp_file_name, err );
if (err) remove( temp_file_name );
ASSERT_NO_ERROR(err);
// Check if file contained expected mesh
check_field_attrib( temp_file_name );
}
static int do_smoother( const char* input_file,
const char* output_file,
const char* ref_mesh_file,
double of_power,
unsigned metric_idx,
AveragingScheme avg_scheme )
{
MsqPrintError err(cerr);
TMetric *const target_metric = metrics[metric_idx].u;
cout << "Input file: " << input_file << endl;
cout << "Metric: ";
if (avg_scheme != NONE)
cout << averaging_names[avg_scheme] << " average of ";
cout << metrics[metric_idx].n << endl;
cout << "Of Power: " << of_power << endl;
auto_ptr<TargetCalculator> tc;
auto_ptr<MeshImpl> ref_mesh_impl;
auto_ptr<ReferenceMesh> ref_mesh;
if (ref_mesh_file) {
ref_mesh_impl.reset(new MeshImpl);
ref_mesh_impl->read_vtk( ref_mesh_file, err );
if (MSQ_CHKERR(err)) return 2;
ref_mesh.reset( new ReferenceMesh( ref_mesh_impl.get() ));
tc.reset( new RefMeshTargetCalculator( ref_mesh.get() ) );
}
else {
tc.reset( new IdealShapeTarget( ) );
}
TQualityMetric jacobian_metric( tc.get(), target_metric );
ElementPMeanP elem_avg( of_power, &jacobian_metric );
VertexPMeanP vtx_avg( of_power, &jacobian_metric );
QualityMetric* mmetrics[] = { &jacobian_metric, &elem_avg, &vtx_avg, &jacobian_metric };
QualityMetric* metric = mmetrics[avg_scheme];
TerminationCriterion outer, inner;
outer.add_iteration_limit( 1 );
inner.add_absolute_vertex_movement( 1e-4 );
inner.add_iteration_limit( 100 );
PMeanPTemplate obj1( of_power, metric );
PatchPowerMeanP obj2( of_power, metric );
ObjectiveFunction& objective = *((avg_scheme == PATCH) ? (ObjectiveFunction*)&obj2 : (ObjectiveFunction*)&obj1);
ConjugateGradient solver( &objective, err );
if (MSQ_CHKERR(err)) return 1;
solver.set_inner_termination_criterion( &inner );
solver.set_outer_termination_criterion( &outer );
solver.use_global_patch();
ConditionNumberQualityMetric qm_metric;
QualityAssessor before_assessor;
QualityAssessor after_assessor;
before_assessor.add_quality_assessment( metric, 10);
before_assessor.add_quality_assessment( &qm_metric );
after_assessor.add_quality_assessment( metric, 10 );
InstructionQueue q;
q.add_quality_assessor( &before_assessor, err );
q.set_master_quality_improver( &solver, err );
q.add_quality_assessor( &after_assessor, err );
MeshImpl mesh;
mesh.read_vtk( input_file, err );
if (MSQ_CHKERR(err)) return 2;
PlanarDomain geom = make_domain( &mesh, err );
if (MSQ_CHKERR(err)) return 1;
q.run_instructions( &mesh, &geom, err );
if (MSQ_CHKERR(err)) return 3;
mesh.write_vtk( output_file, err );
if (MSQ_CHKERR(err)) return 2;
cout << "Wrote: " << output_file << endl;
before_assessor.scale_histograms(&after_assessor);
return 0;
}
// Routine to create initial mesh for test.
// o Marks vertices at a greater topological depth than the specified
// value as slaved.
// o Perturbs higher-order vertices on skin towards element center
// o Marks skin vertices as fixed
int main( int argc, char* argv[] )
{
if (argc != 4)
usage(argv[0]);
char* endptr = 0;
const long n = strtol( argv[1], &endptr, 0 );
if (*endptr || n < 0)
usage(argv[0]);
// read input mesh
MeshImpl mesh;
MsqPrintError err(std::cerr);
mesh.read_vtk( argv[2], err );
if (err) return 1;
// get skin vertices
mesh.mark_skin_fixed( err, true );
if (err) return 1;
std::vector<Mesh::VertexHandle> verts;
mesh.get_all_vertices( verts, err );
if (err) return 1;
std::vector<bool> fixed;
mesh.vertices_get_fixed_flag( arrptr(verts), fixed, verts.size(), err );
if (err) return 1;
std::vector<Mesh::VertexHandle> skin;
for (size_t i = 0; i < verts.size(); ++i)
if (fixed[i])
skin.push_back( verts[i] );
// create map for vertex depth, and initialize to 0 for skin vertices
std::map<Mesh::VertexHandle,int> depth;
std::map<Mesh::VertexHandle,int>::iterator d_iter;
for (size_t i = 0; i < skin.size(); ++i)
depth[skin[i]] = 0;
// get all elements
std::vector<Mesh::ElementHandle> curr, next;
std::vector<Mesh::ElementHandle> conn;
std::vector<size_t> off;
mesh.get_all_elements( next, err );
// build sorted list of higher-order vertices
std::vector<Mesh::VertexHandle> higher_order;
for (size_t i = 0; i < next.size(); ++i) {
Mesh::ElementHandle elem = next[i];
conn.clear();
mesh.elements_get_attached_vertices( &elem, 1, conn, off, err );
if (err) return 1;
EntityTopology type;
mesh.elements_get_topologies( &elem, &type, 1, err );
std::copy( conn.begin() + TopologyInfo::corners(type), conn.end(),
std::back_inserter( higher_order ) );
}
std::sort( higher_order.begin(), higher_order.end() );
higher_order.erase( std::unique( higher_order.begin(), higher_order.end() ),
higher_order.end() );
// build depth map for all vertices
while (!next.empty()) {
curr.swap( next );
next.clear();
while (!curr.empty()) {
Mesh::ElementHandle elem = curr.back();
curr.pop_back();
conn.clear();
mesh.elements_get_attached_vertices( &elem, 1, conn, off, err );
if (err) return 1;
int min = std::numeric_limits<int>::max();
for (size_t i = 0; i < conn.size(); ++i) {
d_iter = depth.find( conn[i] );
if (d_iter != depth.end() && d_iter->second < min)
min = d_iter->second;
}
if (min == std::numeric_limits<int>::max()) {
next.push_back( elem );
continue;
}
for (size_t i = 0; i < conn.size(); ++i) {
d_iter = depth.find( conn[i] );
if (d_iter == depth.end() || d_iter->second > min+1)
depth[conn[i]] = min+1;
}
}
}
// write depth map to tag for debugging purposes
std::vector<int> depth_vals(verts.size());
for (size_t i = 0; i < verts.size(); ++i)
depth_vals[i] = depth[verts[i]];
TagHandle tag = mesh.tag_create( "depth", Mesh::INT, 1, 0, err );
if (err) return 1;
mesh.tag_set_vertex_data( tag, verts.size(), arrptr(verts), arrptr(depth_vals), err );
if (err) return 1;
// set tag specifying slaved vertices
for (size_t i = 0; i < verts.size(); ++i)
if (std::binary_search( higher_order.begin(), higher_order.end(), verts[i] ))
depth_vals[i] = depth[verts[i]] > n;
else
depth_vals[i] = 0;
tag = mesh.tag_create( "slaved", Mesh::INT, 1, 0, err );
if (err) return 1;
mesh.tag_set_vertex_data( tag, verts.size(), arrptr(verts), arrptr(depth_vals), err );
if (err) return 1;
// perturb mid-edge nodes along boundary
std::vector<MsqVertex> coords;
for (size_t i = 0; i < skin.size(); ++i) {
if (!std::binary_search( higher_order.begin(), higher_order.end(), skin[i]))
continue;
curr.clear();
mesh.vertices_get_attached_elements( &skin[i], 1, curr, off, err );
if (err) return 1;
assert(curr.size() == 1);
conn.clear();
mesh.elements_get_attached_vertices( arrptr(curr), 1, conn, off, err );
if (err) return 1;
// estimate element center
coords.resize( conn.size() );
mesh.vertices_get_coordinates( arrptr(conn), arrptr(coords), conn.size(), err );
if (err) return 1;
Vector3D mean(0.0);
for (size_t j = 0; j < coords.size(); ++j)
mean += coords[j];
mean /= coords.size();
size_t idx = std::find( conn.begin(), conn.end(), skin[i] ) - conn.begin();
assert(idx < conn.size());
Vector3D init = coords[idx];
Vector3D pos = (1 - PERTURB_FRACT) * init + PERTURB_FRACT * mean;
mesh.vertex_set_coordinates( skin[i], pos, err );
if (err) return 1;
}
mesh.write_vtk( argv[3], err );
if (err) return 1;
return 0;
}
int uwt( bool skip,
UntangleWrapper::UntangleMetric metric,
const char* input_file_base,
int expected,
bool flip_domain )
{
if (skip)
return 0;
if (!brief_output)
std::cout << std::endl << "**********************************************" << std::endl;
std::cout << "Running \"" << input_file_base << "\" for " << tostr(metric) << std::endl;
if (!brief_output)
std::cout << "**********************************************" << std::endl << std::endl;
// get mesh
MsqError err;
MeshImpl mesh;
std::string input_file( VTK_2D_DIR );
input_file += input_file_base;
mesh.read_vtk( input_file.c_str(), err );
if (err) {
std::cerr << err << std::endl;
std::cerr << "ERROR: " << input_file << " : failed to read file" << std::endl;
return 1;
}
// get domain
std::vector<Mesh::VertexHandle> verts;
mesh.get_all_vertices( verts, err );
if (err || verts.empty()) abort();
MsqVertex coords;
mesh.vertices_get_coordinates( arrptr(verts), &coords, 1, err );
if (err) abort();
Vector3D norm(0,0,flip_domain ? -1 : 1);
PlanarDomain domain( norm, coords );
// run wrapper
UntangleWrapper wrapper( metric );
wrapper.set_vertex_movement_limit_factor( 0.005 );
double constant = (metric == UntangleWrapper::BETA) ? beta : mu_sigma;
if (constant > 0)
wrapper.set_metric_constant( constant );
if (brief_output)
wrapper.quality_assessor().disable_printing_results();
MeshDomainAssoc mesh_and_domain = MeshDomainAssoc(&mesh, &domain);
wrapper.run_instructions( &mesh_and_domain, err );
if (err) {
std::cerr << err << std::endl;
std::cerr << "ERROR: optimization failed" << std::endl;
return 1;
}
// write output file
if (write_output) {
std::string result_file(tostr(metric));
result_file += "-";
result_file += input_file_base;
mesh.write_vtk( result_file.c_str(), err );
if (err) {
std::cerr << err << std::endl;
std::cerr << "ERROR: " << result_file << " : failed to write file" << std::endl;
err.clear();
}
else {
std::cerr << "Wrote file: " << result_file << std::endl;
}
}
// test number of inverted elements
int count, junk;
wrapper.quality_assessor().get_inverted_element_count( count, junk, err );
if (err) abort();
if (count < expected) {
std::cout << "WARNING: expected " << expected
<< " inverted elements but finished with only "
<< count << std::endl
<< "Test needs to be updated?" << std::endl << std::endl;
return 0;
}
else if (count == expected) {
std::cout << "Completed with " << count << " inverted elements remaining"
<< std::endl << std::endl;
return 0;
}
else {
std::cerr << "ERROR: expected " << expected
<< " inverted elements but finished with "
<< count << std::endl << std::endl;
return 1;
}
}
static int test(std::string filename_prefix, std::string mesh_topology_name, MeshDomain *domain=0)
{
int rank, nprocs;
MPI_Comm_rank(MPI_COMM_WORLD, &rank);
MPI_Comm_size(MPI_COMM_WORLD, &nprocs);
if (nprocs > 2) { cerr << "parallel_untangle_shape::test(" << mesh_topology_name << " can only be run with 1 or 2 processors" << std::endl; return 0; }
/* create processor-specific file names */
ostringstream in_name, out_name, gold_name;
in_name << filename_prefix << "par_untangle_original_" << mesh_topology_name << "_mesh." << nprocs << "." << rank << ".vtk";
gold_name << filename_prefix << "par_untangle_smoothed_" << mesh_topology_name << "_mesh." << nprocs << "." << rank << ".vtk";
out_name << "par_untangle_smoothed_" << mesh_topology_name << "_mesh." << nprocs << "." << rank << ".vtk";
cout << "in_name= " << in_name.str() << " gold_name= " << gold_name.str() << " out_name= " << out_name.str() << std::endl;
/* load different mesh files on each processor */
MsqError err;
MeshImpl mesh;
mesh.read_vtk(in_name.str().c_str(), err);
if (err) {cerr << err << endl; return 1;}
/* create parallel mesh instance, specifying tags
* containing parallel data */
ParallelMeshImpl parallel_mesh(&mesh, "GLOBAL_ID", "PROCESSOR_ID");
ParallelHelperImpl helper;
helper.set_communicator(MPI_COMM_WORLD);
helper.set_parallel_mesh(¶llel_mesh);
parallel_mesh.set_parallel_helper(&helper);
/* do Laplacian smooth */
//LaplaceWrapper optimizer;
//optimizer.run_instructions(¶llel_mesh, err);
int msq_debug = 0; // 1,2,3 for more debug info
bool always_smooth = true;
int innerIter = 100;
double gradNorm = 1.e-9;
ParShapeImprover si(innerIter, gradNorm);
//Mesh *pmesh = ¶llel_mesh;
si.run(parallel_mesh, domain, err, always_smooth, msq_debug);
if (err) {cerr << err << endl; return 1; }
/* write mesh */
mesh.write_vtk(out_name.str().c_str(),err);
if (err) {cerr << err << endl; return 1;}
//std::cout << "P[ " << rank <<"] reading gold..." << std::endl;
/* compare mesh with gold copy */
MeshImpl gold;
gold.read_vtk(gold_name.str().c_str(),err);
if (err) {cerr << err << endl; return 1;}
//std::cout << "P[ " << rank <<"] read gold, checking mesh diff..." << std::endl;
bool do_print=true;
double tol = 1.e-4;
bool diff = MeshUtil::meshes_are_different(mesh, gold, err, tol, do_print);
if (err) {cerr << err << endl; return 1;}
//std::cout << "P[ " << rank <<"] read gold, checking mesh diff...done" << std::endl;
if (diff) {cerr << "Error, computed mesh different from gold copy" << std::endl; return 1;}
print_timing_diagnostics(cout);
return 0;
}
int main( int argc, char* argv[] )
{
const char* input_file = 0;
const char* output_file = 0;
for (int i = 1; i < argc; ++i) {
if (!strcmp("-h", argv[i]))
usage(argv[0],true);
else if (!input_file)
input_file = argv[i];
else if (!output_file)
output_file = argv[i];
else
usage(argv[0]);
}
if (!input_file)
input_file = DEFAULT_INPUT;
MsqError err;
MeshImpl mesh;
mesh.read_vtk( input_file, err );
if (err) {
std::cerr << err << std::endl
<< input_file << ": failed to read file" << std::endl;
return 3;
}
PlanarDomain plane(PlanarDomain::XY);
#ifdef TEST_OLD_WRAPPER
ShapeImprovementWrapper smoother;
#else
ShapeImprover smoother;
#endif
IdealWeightInverseMeanRatio extra_metric;
smoother.quality_assessor().add_quality_assessment(&extra_metric);
MeshDomainAssoc mesh_and_domain = MeshDomainAssoc(&mesh, &plane);
smoother.run_instructions( &mesh_and_domain, err );
if (err) {
std::cerr << err << std::endl
<< input_file << ": smoother failed" << std::endl;
return 2;
}
if (output_file) {
mesh.write_vtk( output_file, err );
if (err) {
std::cerr << err << std::endl
<< output_file << ": failed to write file" << std::endl;
return 3;
}
}
if (smoother.quality_assessor().invalid_elements()) {
std::cerr << "Resulting mesh contains invalid elements: untangler did not succeed" << std::endl;
return 4;
}
const QualityAssessor::Assessor* quality =
smoother.quality_assessor().get_results(&extra_metric);
if (!quality) {
std::cerr << "Failed to get quality stats for IMR metric" << std::endl;
return 2;
}
if (fabs(1 - quality->get_average()) > 1e-3) {
std::cerr << "Average quality is not optimal." << std::endl;
return 4;
}
if (quality->get_stddev() > 1e-3) {
std::cerr << "Not all elements have optimal quality." << std::endl;
return 4;
}
return 0;
}
int main( int argc, char* argv[] )
{
MeshTransform xform;
RotateArg rotate_arg( &xform );
ScaleArg scale_arg( &xform );
TranslateArg translate_arg( &xform );
CLArgs::ToggleArg freeonly, skin;
CLArgs args( "vtkxform", "Transform a mesh",
"Apply one or more transformations to vertex coordinates "
"in a mesh read from a VTK file." );
const char* ROTATE_VALS[] = { "a", "i", "j", "k" };
args.double_list_flag( ROTATE_FLAG, "Specify a rotation as an angle in degrees counter-clockwise about a vector", &rotate_arg );
args.limit_list_flag( ROTATE_FLAG, 4, ROTATE_VALS );
const char* SCALE_VALS[] = { "s", "sx", "sy", "sz" };
args.double_list_flag( SCALE_FLAG, "Specify factor(s) by which to scale mesh about origin", &scale_arg );
args.limit_list_flag( SCALE_FLAG, 1, SCALE_VALS );
args.limit_list_flag( SCALE_FLAG, 3, SCALE_VALS + 1 );
const char* TRANSLATE_VALS[] = { "dx", "dy", "dz" };
args.double_list_flag( TRANSLATE_FLAG, "Specify translation of vertex coordinates.", &translate_arg );
args.limit_list_flag( TRANSLATE_FLAG, 3, TRANSLATE_VALS );
args.toggle_flag( 'f', "Do not move fixed vertices.", &freeonly );
args.toggle_flag( 'k', "Mark boundary vertices as fixed", &skin );
args.add_required_arg( "input_file" );
args.add_required_arg( "output_file" );
std::vector<std::string> files;
if (!args.parse_options( argc, argv, files, std::cerr )) {
args.print_usage( std::cerr );
exit(1);
}
std::string input_file = files[0];
std::string output_file = files[1];
MeshImpl mesh;
MsqError err;
mesh.read_vtk( input_file.c_str(), err );
if (err) {
std::cerr << err << std::endl
<< "Failed to read file: " << input_file << std::endl;
return 1;
}
if (skin.value()) {
mesh.mark_skin_fixed( err, false );
if (err) {
std::cerr << err << std::endl
<< "Failed to skin mesh from file: " << input_file << std::endl;
return 1;
}
}
xform.skip_fixed_vertices( freeonly.value() );
MeshDomainAssoc mesh_and_domain = MeshDomainAssoc(&mesh, 0);
xform.loop_over_mesh( &mesh_and_domain, 0, err );
if (err) {
std::cerr << err << std::endl ;
return 2;
}
mesh.write_vtk( output_file.c_str(), err );
if (err) {
std::cerr << err << std::endl
<< "Failed to write file: " << output_file << std::endl;
return 1;
}
return 0;
}
void BCDTest::compare_bcd( ObjectiveFunction* OF, string name, const char* mesh_file )
{
MsqPrintError err(cout);
size_t i;
vector<MsqVertex> initial_coords, global_coords, bcd_coords;
vector<Mesh::VertexHandle> vertex_list;
// set up a smoother
TerminationCriterion iterations, vertex_movement;
iterations.add_iteration_limit( 2 );
vertex_movement.add_absolute_vertex_movement( 1e-3 );
SolverType global_solver( OF );
SolverType bcd_solver( OF );
global_solver.use_global_patch();
bcd_solver.use_element_on_vertex_patch();
bcd_solver.do_block_coordinate_descent_optimization();
global_solver.set_inner_termination_criterion( &vertex_movement );
bcd_solver.set_inner_termination_criterion( &iterations );
bcd_solver.set_outer_termination_criterion( &vertex_movement );
QualityAssessor qa;
qa.add_quality_assessment( &mMetric );
InstructionQueue global_q, bcd_q;
global_q.add_quality_assessor( &qa, err );
global_q.set_master_quality_improver( &global_solver, err );
global_q.add_quality_assessor( &qa, err );
bcd_q.set_master_quality_improver( &bcd_solver, err );
bcd_q.add_quality_assessor( &qa, err );
// read mesh
MeshImpl mesh;
mesh.read_vtk( mesh_file, err ); ASSERT_NO_ERROR(err);
mesh.get_all_vertices( vertex_list, err ); ASSERT_NO_ERROR(err);
CPPUNIT_ASSERT(!vertex_list.empty());
initial_coords.resize( vertex_list.size() );
mesh.vertices_get_coordinates( arrptr(vertex_list), arrptr(initial_coords), vertex_list.size(), err );
ASSERT_NO_ERROR(err);
// run global smoother
global_q.run_instructions( &mesh, err );
ASSERT_NO_ERROR(err);
mesh.write_vtk( (name + "-gbl.vtk").c_str(), err );
global_coords.resize( vertex_list.size() );
mesh.vertices_get_coordinates( arrptr(vertex_list), arrptr(global_coords), vertex_list.size(), err );
ASSERT_NO_ERROR(err);
// restore initial vertex positions
for (i = 0; i < vertex_list.size(); ++i) {
mesh.vertex_set_coordinates( vertex_list[i], initial_coords[i], err );
ASSERT_NO_ERROR(err);
}
// run local smoother
bcd_q.run_instructions( &mesh, err );
ASSERT_NO_ERROR(err);
mesh.write_vtk( (name + "-bcd.vtk").c_str(), err );
bcd_coords.resize( vertex_list.size() );
mesh.vertices_get_coordinates( arrptr(vertex_list), arrptr(bcd_coords), vertex_list.size(), err );
ASSERT_NO_ERROR(err);
// compare results
for (i = 0; i < bcd_coords.size(); ++i)
CPPUNIT_ASSERT_VECTORS_EQUAL( global_coords[i], bcd_coords[i], 1e-2 );
}
int main( int argc, char* argv[] )
{
const double default_fraction = 0.05;
const double zero = 0.0;
int one = 1;
CLArgs::ToggleArg allow_invalid( false );
CLArgs::DoubleRangeArg rand_percent( default_fraction, &zero, 0 );
CLArgs::IntRangeArg unoptimize( 0, &one, 0 );
CLArgs args( "vtkrandom",
"Randomize mesh vertex locations.",
"Read VTK file, randomize locations of containded vertices, and re-write file." );
args.toggle_flag( INVALID_FLAG, "Allow inverted elements in output", &allow_invalid );
args.double_flag( PERCENT_FLAG, "fract", "Randomize fraction", &rand_percent );
args.int_flag( UNOPTIMIZE_FLAG, "N", "Use UnOptimizer with N passes rather than Randomize", &unoptimize );
add_domain_args( args );
args.add_required_arg( "input_file" );
args.add_required_arg( "output_file" );
std::vector<std::string> files;
if (!args.parse_options( argc, argv, files, std::cerr )) {
args.print_usage( std::cerr );
exit(1);
}
std::string input_file = files[0];
std::string output_file = files[1];
MsqError err;
MeshImpl mesh;
mesh.read_vtk( input_file.c_str(), err );
if (err) {
std::cerr << "ERROR READING FILE: " << input_file << std::endl
<< err << std::endl;
return 2;
}
MeshDomain* domain = process_domain_args( &mesh );
TerminationCriterion tc;
QualityAssessor qa( false );
InstructionQueue q;
Randomize op( rand_percent.value() );
IdealWeightInverseMeanRatio metric;
PMeanPTemplate of( 1, &metric );
UnOptimizer op2( &of );
if (unoptimize.seen()) {
tc.add_iteration_limit( unoptimize.value() );
op2.set_outer_termination_criterion( &tc );
q.add_preconditioner( &op, err );
q.set_master_quality_improver( &op2, err );
}
else {
q.set_master_quality_improver( &op, err );
}
q.add_quality_assessor( &qa, err );
q.run_instructions( &mesh, domain, err );
if (err) {
std::cerr << err << std::endl;
return 3;
}
int inverted, junk;
if (qa.get_inverted_element_count( inverted, junk, err ) && inverted ) {
if (allow_invalid.value())
std::cerr << "Warning: output mesh contains " << inverted << " inverted elements" << std::endl;
else {
std::cerr << "Error: output mesh contains " << inverted << " inverted elements" << std::endl;
return 4;
}
}
mesh.write_vtk( output_file.c_str(), err );
if (err) {
std::cerr << "ERROR WRITING FILE: " << output_file << std::endl
<< err << std::endl;
return 2;
}
return 0;
}