void DumpSystem::dumpHeaderFile(double dumpTime) {
string dumpFileName = pathToFolder + s->getName()+"_nf."+Util::toString(dumpTime)+".dump.head";
//cout<<"writing file: "<<dumpFileName<<endl;;
ofstream ofs;
//ios_base::out -- Set for output only, instead of for input/output
//ios_base::trunc -- Truncate the file - that is overwrite anything that was already there
ofs.open((dumpFileName).c_str(), ios_base::out | ios_base::trunc);
//Make sure we could open the stream (this is really the only thing that can go around)
if(!ofs.is_open()) {
cout<<"--------"<<endl;
cout<<"-Error dumping header file.";
cout<<"-Could not open stream to file: '"<<dumpFileName<<"'"<<endl;
cout<<"-The path is probably incorrect or does not exist."<<endl;
return;
}
ofs<<"## Automatically generated file from NFsim. Do not edit manually.\n";
ofs<<"## To read this file and the associated information, use the\n";
ofs<<"## included Matlab script readNFdump.m.\n\n";
ofs<<"\n>> Time #######################################\n";
ofs<<dumpTime<<"\n";
ofs<<"\n>> MoleculeTypeDef ############################\n";
ofs<<"##\tindex\tname\tnumOfInstances\tnumOfComponents\n";
for(int i=0; i<s->getNumOfMoleculeTypes(); i++) {
MoleculeType *mt = s->getMoleculeType(i);
ofs<<"\t"<<i<<"\t"<<mt->getName()<<"\t"<<mt->getMoleculeCount()<<"\t";
ofs<<mt->getNumOfComponents()<<"\t"<<mt->getNumOfTypeIFunctions()<<"\n";
}
ofs<<"\n>> MoleculeTypeComponents #####################\n";
ofs<<"##\ttype\tindex\tname\n";
for(int i=0; i<s->getNumOfMoleculeTypes(); i++) {
MoleculeType *mt = s->getMoleculeType(i);
for(int k=0; k<mt->getNumOfComponents(); k++) {
ofs<<"\t"<<i<<"\t"<<k<<"\t"<<mt->getComponentName(k)<<"\n";
}
}
ofs<<"\n>> MoleculeTypeFunctions ######################\n";
ofs<<"##\ttype\tindex\tname\n";
for(int i=0; i<s->getNumOfMoleculeTypes(); i++) {
MoleculeType *mt = s->getMoleculeType(i);
for(int k=0; k<mt->getNumOfTypeIFunctions(); k++) {
ofs<<"\t"<<i<<"\t"<<k<<"\t"<<mt->getTypeILocalFunction(k)->getName()<<"\n";
}
}
ofs<<"\n>> EOF ##########################################\n";
ofs.flush();
ofs.close();
}
