void IsisMain () {
// Initialize variables
ResetGlobals();
//Check that the file comes from the right camera
UserInterface &ui = Application::GetUserInterface();
Filename inFile = ui.GetFilename("FROM");
iString id;
int sumMode;
try {
Pvl lab(inFile.Expanded());
if (lab.HasKeyword("DATA_SET_ID"))
id = (string) lab.FindKeyword("DATA_SET_ID");
else {
string msg = "Unable to read [DATA_SET_ID] from input file [" + inFile.Expanded() + "]";
throw iException::Message(iException::Io, msg, _FILEINFO_);
}
//Checks if in file is rdr
bool projected = lab.HasObject("IMAGE_MAP_PROJECTION");
if (projected) {
string msg = "[" + inFile.Name() + "] appears to be an rdr file.";
msg += " Use pds2isis.";
throw iException::Message(iException::User, msg, _FILEINFO_);
}
sumMode = (int) lab.FindKeyword("CROSSTRACK_SUMMING");
// Store the decompanding information
PvlKeyword xtermKeyword = lab.FindKeyword("LRO:XTERM"),
mtermKeyword = lab.FindKeyword("LRO:MTERM"),
btermKeyword = lab.FindKeyword("LRO:BTERM");
if (mtermKeyword.Size() != xtermKeyword.Size() || btermKeyword.Size() != xtermKeyword.Size()) {
string msg = "The decompanding terms do not have the same dimensions";
throw iException::Message(iException::Io, msg, _FILEINFO_);
}
for (int i = 0; i < xtermKeyword.Size(); i++) {
g_xterm.push_back(xtermKeyword[i]);
g_mterm.push_back(mtermKeyword[i]);
g_bterm.push_back(btermKeyword[i]);
if (i == 0)
g_xterm[i] = g_xterm[i];
else
g_xterm[i] = (int) (g_mterm[i - 1] * g_xterm[i] + g_bterm[i - 1] + .5);
}
if (lab.FindKeyword("FRAME_ID")[0] == "RIGHT")
g_flip = true;
else
g_flip = false;
}
catch (iException &e) {
string msg = "The PDS header is missing important keyword(s).";
throw iException::Message(iException::Io, msg, _FILEINFO_);
}
id.ConvertWhiteSpace();
id.Compress();
id.Trim(" ");
if (id != "LRO-L-LROC-2-EDR-V1.0") {
string msg = "Input file [" + inFile.Expanded() + "] does not appear to be "
+ "in LROC-NAC EDR format. DATA_SET_ID is [" + id + "]";
throw iException::Message(iException::Io, msg, _FILEINFO_);
}
//Process the file
Pvl pdsLab;
ProcessImportPds p;
p.SetPdsFile(inFile.Expanded(), "", pdsLab);
// Set the output bit type to Real
CubeAttributeOutput &outAtt = ui.GetOutputAttribute("TO");
g_ocube = new Cube();
g_ocube->SetByteOrder(outAtt.ByteOrder());
g_ocube->SetCubeFormat(outAtt.FileFormat());
g_ocube->SetMinMax((double) VALID_MIN2, (double) VALID_MAX2);
if (outAtt.DetachedLabel()) g_ocube->SetDetached();
if (outAtt.AttachedLabel()) g_ocube->SetAttached();
g_ocube->SetDimensions(p.Samples(), p.Lines(), p.Bands());
g_ocube->SetPixelType(Isis::SignedWord);
g_ocube->Create(ui.GetFilename("TO"));
// Do 8 bit to 12 bit conversion
// And if NAC-R, flip the frame
p.StartProcess(Import);
// Then translate the labels
TranslateLrocNacLabels(inFile, g_ocube);
p.EndProcess();
g_ocube->Close();
delete g_ocube;
}
/**
* This program imports Mars Express HRSC files
*
* This works by first determining whether or not the input file
* has prefix data.
*
* If there is prefix data, a StartProcess is called with the
* IgnoreData() function callback in order to get the import class to
* collect prefix data. Once the prefix data is populated, we go ahead
* and look for "gaps" - HRSC files can give us a time and exposure duration
* for each line, we look for where the time + exposure duration != next line's time.
* We populate a table (LineScanTimes) with the prefix data and lineInFile with whether or not
* a gap should be inserted.
*
* For all files, we now process the data using the WriteOutput callback. If there were gaps,
* WriteOutput will put them in their proper places. Finally, we translate the labels and put
* the LineScanTimes (if necessary) in the output cube.
*
* This is a two-pass system for files with prefix data, one-pass for files without.
*
* The Isis2 equivalent to this program is mex2isis.pl. It is worth noting that regardless of the
* input file's byte order, the prefix data byte order is always LSB.
*/
void IsisMain() {
UserInterface &ui = Application::GetUserInterface();
try {
Pvl temp(ui.GetFileName("FROM"));
// Check for HRSC file
if(temp["INSTRUMENT_ID"][0] != "HRSC") throw IException();
}
catch(IException &e) {
IString msg = "File [" + ui.GetFileName("FROM") +
"] does not appear to be a Mars Express HRSC image.";
throw IException(IException::User, msg, _FILEINFO_);
}
ProcessImportPds p;
Pvl label;
lineInFile.clear();
numLinesSkipped = 0;
p.SetPdsFile(ui.GetFileName("FROM"), "", label);
CubeAttributeOutput outAtt(ui.GetFileName("TO"));
outCube = new Cube();
outCube->setByteOrder(outAtt.byteOrder());
outCube->setFormat(outAtt.fileFormat());
outCube->setLabelsAttached(outAtt.labelAttachment() == AttachedLabel);
/**
* Isis2 mex2isis.pl:
* if (index($detector_id,"MEX_HRSC_SRC") < 0 &&
* $processing_level_id < 3)
*/
bool hasPrefix = (label["DETECTOR_ID"][0] != "MEX_HRSC_SRC" && (int)label["PROCESSING_LEVEL_ID"] < 3);
TableField ephTimeField("EphemerisTime", TableField::Double);
TableField expTimeField("ExposureTime", TableField::Double);
TableField lineStartField("LineStart", TableField::Integer);
TableRecord timesRecord;
timesRecord += ephTimeField;
timesRecord += expTimeField;
timesRecord += lineStartField;
Table timesTable("LineScanTimes", timesRecord);
if(hasPrefix) {
p.SetDataPrefixBytes((int)label.findObject("IMAGE")["LINE_PREFIX_BYTES"]);
p.SaveDataPrefix();
p.Progress()->SetText("Reading Prefix Data");
p.StartProcess(IgnoreData);
// The prefix data is always in LSB format, regardless of the overall file format
EndianSwapper swapper("LSB");
std::vector<double> ephemerisTimes;
std::vector<double> exposureTimes;
std::vector< std::vector<char *> > prefix = p.DataPrefix();
for(int line = 0; line < p.Lines(); line++) {
double ephTime = swapper.Double((double *)prefix[0][line]);
double expTime = swapper.Float((float *)(prefix[0][line] + 8)) / 1000.0;
if(line > 0) {
/**
* We know how many skipped lines with this equation. We take the
* difference in the current line and the last line's time, which will
* ideally be equal to the last line's exposure duration. We divide this by
* the last line's exposure duration, and the result is the 1-based count of
* how many exposures there were between the last line and the current line.
* We subtract one in order to remove the known exposure, and the remaining should
* be the 1-based count of how many lines were skipped. Add 0.5 to round up.
*/
int skippedLines = (int)((ephTime - ephemerisTimes.back()) / exposureTimes.back() - 1.0 + 0.5);
for(int i = 0; i < skippedLines; i++) {
ephemerisTimes.push_back(ephemerisTimes.back() + exposureTimes.back());
exposureTimes.push_back(exposureTimes.back());
lineInFile.push_back(false);
}
}
ephemerisTimes.push_back(ephTime);
exposureTimes.push_back(expTime);
lineInFile.push_back(true);
}
double lastExp = 0.0;
for(unsigned int i = 0; i < ephemerisTimes.size(); i++) {
if(lastExp != exposureTimes[i]) {
lastExp = exposureTimes[i];
timesRecord[0] = ephemerisTimes[i];
timesRecord[1] = exposureTimes[i];
timesRecord[2] = (int)i + 1;
timesTable += timesRecord;
}
}
outCube->setDimensions(p.Samples(), lineInFile.size(), p.Bands());
}
else {
//Checks if in file is rdr
FileName inFile = ui.GetFileName("FROM");
QString msg = "[" + inFile.name() + "] appears to be an rdr file.";
msg += " Use pds2isis.";
throw IException(IException::User, msg, _FILEINFO_);
}
p.Progress()->SetText("Importing");
outCube->create(ui.GetFileName("TO"));
p.StartProcess(WriteOutput);
if(hasPrefix) {
outCube->write(timesTable);
}
// Get as many of the other labels as we can
Pvl otherLabels;
//p.TranslatePdsLabels (otherLabels);
TranslateHrscLabels(label, otherLabels);
if(otherLabels.hasGroup("Mapping") &&
(otherLabels.findGroup("Mapping").keywords() > 0)) {
outCube->putGroup(otherLabels.findGroup("Mapping"));
}
if(otherLabels.hasGroup("Instrument") &&
(otherLabels.findGroup("Instrument").keywords() > 0)) {
outCube->putGroup(otherLabels.findGroup("Instrument"));
}
if(otherLabels.hasGroup("BandBin") &&
(otherLabels.findGroup("BandBin").keywords() > 0)) {
outCube->putGroup(otherLabels.findGroup("BandBin"));
}
if(otherLabels.hasGroup("Archive") &&
(otherLabels.findGroup("Archive").keywords() > 0)) {
outCube->putGroup(otherLabels.findGroup("Archive"));
}
if(otherLabels.hasGroup("Kernels") &&
(otherLabels.findGroup("Kernels").keywords() > 0)) {
outCube->putGroup(otherLabels.findGroup("Kernels"));
}
p.EndProcess();
outCube->close();
delete outCube;
outCube = NULL;
lineInFile.clear();
}
void IsisMain (){
//initialize globals
summed = false;
summedOutput = NULL;
// Grab the file to import
ProcessImportPds p;
UserInterface &ui = Application::GetUserInterface();
Filename inFile = ui.GetFilename("FROM");
Filename out = ui.GetFilename("TO");
// Make sure it is a Galileo SSI image
Pvl lab(inFile.Expanded());
//Checks if in file is rdr
if( lab.HasObject("IMAGE_MAP_PROJECTION") ) {
string msg = "[" + inFile.Name() + "] appears to be an rdr file.";
msg += " Use pds2isis.";
throw iException::Message(iException::Io,msg, _FILEINFO_);
}
// data set id value must contain "SSI-2-REDR-V1.0"(valid SSI image)
// or "SSI-4-REDR-V1.0"(reconstructed from garbled SSI image)
string dataSetId;
dataSetId = (string)lab["DATA_SET_ID"];
try {
if (dataSetId.find("SSI-2-REDR-V1.0") == string::npos
&& dataSetId.find("SSI-4-REDR-V1.0") == string::npos) {
string msg = "Invalid DATA_SET_ID [" + dataSetId + "]";
throw iException::Message(iException::Pvl,msg,_FILEINFO_);
}
}
catch (iException &e) {
string msg = "Unable to read [DATA_SET_ID] from input file [" +
inFile.Expanded() + "]";
throw iException::Message(iException::Io,msg,_FILEINFO_);
}
// set summing mode
if(ui.GetString("FRAMEMODE") == "AUTO") {
double frameDuration = lab["FRAME_DURATION"];
// reconstructed images are 800x800 (i.e. not summed)
// even though they have frame duration of 2.333
// (which ordinarily indicates a summed image)
if (dataSetId.find("SSI-4-REDR-V1.0") != string::npos) {
summed = false;
}
else if (frameDuration > 2.0 && frameDuration < 3.0) {
summed = true;
}
// seti documentation implies valid frame duration values are 2.333, 8.667, 30.333, 60.667
// however some images have value 15.166 (see example 3700R.LBL)
else if (frameDuration > 15.0 && frameDuration < 16.0) {
summed = true;
}
}
else if(ui.GetString("FRAMEMODE") == "SUMMED") {
summed = true;
}
else {
summed = false;
}
Progress prog;
Pvl pdsLabel;
p.SetPdsFile(inFile.Expanded(),"",pdsLabel);
//Set up the output file
Cube *ocube;
if(!summed) {
ocube = p.SetOutputCube("TO");
p.StartProcess();
}
else {
summedOutput = new Cube();
summedOutput->SetDimensions(p.Samples()/2, p.Lines()/2, p.Bands());
summedOutput->SetPixelType(p.PixelType());
summedOutput->Create(ui.GetFilename("TO"));
p.StartProcess(TranslateData);
ocube = summedOutput;
}
TranslateLabels(pdsLabel, ocube);
p.EndProcess ();
if(summed) {
summedOutput->Close();
delete summedOutput;
}
return;
}
void IsisMain() {
colorOffset = 0;
frameletLines.clear();
outputCubes.clear();
uveven = NULL;
uvodd = NULL;
viseven = NULL;
visodd = NULL;
ProcessImportPds p;
Pvl pdsLab;
UserInterface &ui = Application::GetUserInterface();
QString fromFile = ui.GetFileName("FROM");
flip = false;//ui.GetBoolean("FLIP");
p.SetPdsFile(fromFile, "", pdsLab);
ValidateInputLabels(pdsLab);
inputCubeLines = p.Lines();
lookupTable = Stretch();
// read the lut if the option is on
if(ui.GetBoolean("UNLUT") && pdsLab["LRO:LOOKUP_TABLE_TYPE"][0] == "STORED") {
PvlKeyword lutKeyword = pdsLab["LRO:LOOKUP_CONVERSION_TABLE"];
for(int i = 0; i < lutKeyword.size(); i ++) {
IString lutPair = lutKeyword[i];
lutPair.ConvertWhiteSpace();
lutPair.Remove("() ");
QString outValueMin = lutPair.Token(" ,").ToQt();
QString outValueMax = lutPair.Token(" ,").ToQt();
lookupTable.AddPair(i, (toDouble(outValueMin) + toDouble(outValueMax)) / 2.0);
}
}
QString instModeId = pdsLab["INSTRUMENT_MODE_ID"];
// this will be used to convert num input lines to num output lines,
// only changed for when both uv and vis exist (varying summing)
double visOutputLineRatio = 1.0;
double uvOutputLineRatio = 1.0;
int numFilters = 0;
if(ui.GetBoolean("COLOROFFSET")) {
colorOffset = ui.GetInteger("COLOROFFSETSIZE");
}
// Determine our band information based on
// INSTRUMENT_MODE_ID - FILTER_NUMBER is
// only going to be used for BW images
if(instModeId == "COLOR") {
numFilters = 7;
frameletLines.push_back(4);
frameletLines.push_back(4);
frameletLines.push_back(14);
frameletLines.push_back(14);
frameletLines.push_back(14);
frameletLines.push_back(14);
frameletLines.push_back(14);
uveven = new Cube();
uvodd = new Cube();
viseven = new Cube();
visodd = new Cube();
// 14 output lines (1 framelet) from 5vis/2uv lines
visOutputLineRatio = 14.0 / (14.0 * 5.0 + 4.0 * 2.0);
// 4 output lines (1 framelet) from 5vis/2uv lines
uvOutputLineRatio = 4.0 / (14.0 * 5.0 + 4.0 * 2.0);
}
else if(instModeId == "VIS") {
numFilters = 5;
frameletLines.push_back(14);
frameletLines.push_back(14);
frameletLines.push_back(14);
frameletLines.push_back(14);
frameletLines.push_back(14);
viseven = new Cube();
visodd = new Cube();
// 14 output lines (1 framelet) from 5vis/2uv lines
visOutputLineRatio = 14.0 / (14.0 * 5.0);
}
else if(instModeId == "UV") {
numFilters = 2;
frameletLines.push_back(4);
frameletLines.push_back(4);
uveven = new Cube();
uvodd = new Cube();
// 4 output lines (1 framelet) from 2uv lines
uvOutputLineRatio = 4.0 / (4.0 * 2.0);
}
else if(instModeId == "BW") {
numFilters = 1;
frameletLines.push_back(14);
viseven = new Cube();
visodd = new Cube();
}
padding.resize(numFilters);
for(int filter = 0; filter < numFilters; filter++) {
padding[filter] = (colorOffset * frameletLines[filter]) * filter;
// dont count UV for VIS offsetting
if(instModeId == "COLOR" && filter > 1) {
padding[filter] -= 2 * colorOffset * frameletLines[filter];
}
}
FileName baseFileName(ui.GetFileName("TO"));
if(uveven && uvodd) {
// padding[1] is max padding for UV
int numSamples = ((viseven) ? p.Samples() / 4 : p.Samples());
numSamples = 128; // UV is alway sum 4 so it is 128 samples
int numLines = (int)(uvOutputLineRatio * inputCubeLines + 0.5) + padding[1];
int numBands = 2;
uveven->setDimensions(numSamples, numLines, numBands);
uveven->setPixelType(Isis::Real);
QString filename = baseFileName.path() + "/" + baseFileName.baseName() + ".uv.even.cub";
uveven->create(filename);
uvodd->setDimensions(numSamples, numLines, numBands);
uvodd->setPixelType(Isis::Real);
filename = baseFileName.path() + "/" + baseFileName.baseName() + ".uv.odd.cub";
uvodd->create(filename);
}
if(viseven && visodd) {
// padding[size-1] is max padding for vis (padding[0] or padding[4] or padding[6])
int numSamples = p.Samples();
int numLines = (int)(visOutputLineRatio * inputCubeLines + 0.5) + padding[padding.size()-1];
int numBands = ((uveven) ? padding.size() - 2 : padding.size());
viseven->setDimensions(numSamples, numLines, numBands);
viseven->setPixelType(Isis::Real);
QString filename = baseFileName.path() + "/" + baseFileName.baseName() + ".vis.even.cub";
viseven->create(filename);
visodd->setDimensions(numSamples, numLines, numBands);
visodd->setPixelType(Isis::Real);
filename = baseFileName.path() + "/" + baseFileName.baseName() + ".vis.odd.cub";
visodd->create(filename);
}
Pvl isis3VisEvenLab, isis3VisOddLab, isis3UvEvenLab, isis3UvOddLab;
TranslateLabels(pdsLab, isis3VisEvenLab, isis3VisOddLab, isis3UvEvenLab, isis3UvOddLab);
writeNullsToFile();
p.StartProcess(separateFramelets);
p.EndProcess();
// Add original labels
OriginalLabel origLabel(pdsLab);
int numFramelets = padding.size();
PvlKeyword numFrameletsKeyword("NumFramelets", toString(numFramelets));
if(uveven) {
for(int grp = 0; grp < isis3UvEvenLab.groups(); grp++) {
uveven->putGroup(isis3UvEvenLab.group(grp));
}
History history("IsisCube");
history.AddEntry();
uveven->write(history);
uveven->write(origLabel);
uveven->close();
delete uveven;
uveven = NULL;
}
if(uvodd) {
for(int grp = 0; grp < isis3UvOddLab.groups(); grp++) {
uvodd->putGroup(isis3UvOddLab.group(grp));
}
History history("IsisCube");
history.AddEntry();
uvodd->write(history);
uvodd->write(origLabel);
uvodd->close();
delete uvodd;
uvodd = NULL;
}
if(viseven) {
for(int grp = 0; grp < isis3VisEvenLab.groups(); grp++) {
viseven->putGroup(isis3VisEvenLab.group(grp));
}
History history("IsisCube");
history.AddEntry();
viseven->write(history);
viseven->write(origLabel);
viseven->close();
delete viseven;
viseven = NULL;
}
if(visodd) {
for(int grp = 0; grp < isis3VisOddLab.groups(); grp++) {
visodd->putGroup(isis3VisOddLab.group(grp));
}
History history("IsisCube");
history.AddEntry();
visodd->write(history);
visodd->write(origLabel);
visodd->close();
delete visodd;
visodd = NULL;
}
}