int main(int argc, char *argv[])
{
SimpleMatrix m;
assert (m.nrow() == 0);
assert (m.ncol() == 0);
m.resize(3, 2);
assert (m.nrow() == 3);
assert (m.ncol() == 2);
m.zero();
assert (m[0][0] == 0.0);
assert (m[2][1] == 0.0);
std::vector<double> col(3, 1.0);
m.appendCol(col);
assert (m[0][0] == 0.0);
assert (m[2][2] == 1.0);
m.resize(2,3);
std::vector<double> row(3, 2.0);
m.appendRow(row);
assert (m[0][0] == 0.0);
assert (m[2][2] == 2.0);
return 0;
}
int main(int argc, char** argv) {
double genotype[] = {0, 2, -9, 2, 2, 2, 2, -9, 1,
2, 2, 2, 2, 1, 1, -9, -9, 0};
SimpleMatrix m; // marker by sample matrix
m.resize(3, 6);
int offset = 0;
for (int i = 0; i < m.nrow(); ++i) {
for (int j = 0; j < m.ncol(); ++j) {
m[i][j] = genotype[offset];
++offset;
}
}
std::vector<std::string> iid;
char buf[128];
for (int i = 0; i < m.ncol(); ++i) {
sprintf(buf, "%d", i + 1);
iid.push_back(buf);
}
std::vector<double> pheno;
pheno.push_back(-9);
pheno.push_back(-9);
pheno.push_back(2);
pheno.push_back(-9);
pheno.push_back(2);
pheno.push_back(2);
PlinkOutputFile pout("testPlinkOutputFile.output");
pout.writeFAM(iid, iid, pheno);
pout.writeBIM("1", "snp1", 0, 1, "G", "A");
pout.writeBIM("1", "snp2", 0, 2, "1", "2");
pout.writeBIM("1", "snp3", 0, 3, "A", "C");
pout.writeBED(&m, m.ncol(), m.nrow());
fprintf(stderr, "Done\n");
return 0;
}
