//Called when loading analysis parameters; relative to histograms
//This is the top level method; this method calls loadAnalysisParametersHistograms(ifstream, Timing::HistoSetup) depending on which histogram is requested by the user
void ParameterLoaderAnaysis::loadAnalysisParametersHistograms(ifstream & inputFileStream, AnalysisSetupUniformity &aSetupUniformity){
    //Variable Declaration
    bool bExitSuccess = false;
    bool bSetup = false;
    
    pair<string,string> pair_strParam; //<Field, Value>

    string strName = "";    //What Histo Case should we create?
    string strLine = "";
    string strTmp = "";     //Used for case insensitive comparison of strName
    
    //Loop through to find "Histo_Name" Should be the first one
    while ( getlineNoSpaces(inputFileStream, strLine) ) { //Loop through file to find "Histo_Name"
	//Debugging
	//cout<<"loadAnalysisParametersHistograms (Top Level); strLine = " << strLine << endl;

        //Does the user want to comment out this line?
        if ( 0 == strLine.compare(0,1,"#") ) continue;
        
        //Do we reach the end of the section? If so the user has configured the file incorrectly
        if ( 0 == strLine.compare(strSecEnd_Uniformity_Hiso) ) { //Section End Reached Prematurely
            printClassMethodMsg("ParameterLoaderAnaysis","loadAnalysisParametersHistograms","I have reached the END of a Histogram Heading\n");
            printClassMethodMsg("ParameterLoaderAnaysis","loadAnalysisParametersHistograms","\tBut I Have NOT found the 'Histo_Name' field\n");
            printClassMethodMsg("ParameterLoaderAnaysis","loadAnalysisParametersHistograms","\tYou have configured this heading incorrectly, the 'Histo_Name' field is expected to be the FIRST line after the Heading\n");
            printClassMethodMsg("ParameterLoaderAnaysis","loadAnalysisParametersHistograms","\tThis object has been skipped, please cross-check\n");
            
            //Exit the Loop to find "Detector_Name"
            break;
        } //End Case: Section End Reached Prematurely
        
        pair_strParam = getParsedLine(strLine,bExitSuccess);
        
        if (bExitSuccess) { //Case: Parameter Fetched Successfully
            transform(pair_strParam.first.begin(),pair_strParam.first.end(),pair_strParam.first.begin(),toupper);
            
            if ( 0 == pair_strParam.first.compare("HISTO_NAME") ) { //Case: Name found!
                //Store name locally & convert to upper case
                strName = pair_strParam.second;
                
                //Set the correct exit flag
                bSetup = true;
                
                //Exit the Loop to find "Detector_Name"
                break;
            } //End Case: Detector Name found!
            else{ //Case: Detector Name not found!
                printClassMethodMsg("ParameterLoaderAnaysis","loadAnalysisParametersHistograms","I am parsing a Histogram Heading\n");
                printClassMethodMsg("ParameterLoaderAnaysis","loadAnalysisParametersHistograms","\tHowever I expected the 'Histo_Name' field to be the first line after the heading\n");
                printClassMethodMsg("ParameterLoaderAnaysis","loadAnalysisParametersHistograms", ( "\tThe current line I am parsing: " + strLine ).c_str() );
                printClassMethodMsg("ParameterLoaderAnaysis","loadAnalysisParametersHistograms","\tHas been skipped and may lead to undefined behavior");
            } //End Case: Name not found!
        }//End Case: Parameter Fetched Successfully
        else{ //Case: Parameter was NOT fetched Successfully
            printClassMethodMsg("ParameterLoaderAnaysis","loadAnalysisParametersHistograms","Sorry I didn't parse parameter correctly\n");
            printClassMethodMsg("ParameterLoaderAnaysis","loadAnalysisParametersHistograms", ( "\tCurrent line: " + strLine ).c_str() );
        } //End Case: Parameter was NOT fetched Successfully
    } //Loop through file to find "Name"
    
    //Fetch the values for the map for the correct case
    if (bSetup) { //Case: Setup Correct
        strTmp = strName;
        transform(strTmp.begin(), strTmp.end(), strTmp.begin(), toupper);
        
        if (0 == strTmp.compare("CLUSTADC") ) { //Case: Cluster ADC's
            aSetupUniformity.histoSetup_clustADC.strHisto_Name = strName;
            
            loadAnalysisParametersHistograms(inputFileStream, aSetupUniformity.histoSetup_clustADC);
        } //End Case: Cluster ADC's
        else if (0 == strTmp.compare("CLUSTMULTI") ) { //Case: Cluster Multi
            aSetupUniformity.histoSetup_clustMulti.strHisto_Name = strName;
            
            loadAnalysisParametersHistograms(inputFileStream, aSetupUniformity.histoSetup_clustMulti);
        } //End Case: Cluster Multi
        else if (0 == strTmp.compare("CLUSTPOS") ) { //Case: Cluster Position
            aSetupUniformity.histoSetup_clustPos.strHisto_Name = strName;
            
            loadAnalysisParametersHistograms(inputFileStream, aSetupUniformity.histoSetup_clustPos);
        } //End Case: Cluster Position
        else if (0 == strTmp.compare("CLUSTSIZE") ) { //Case: Cluster Size
            aSetupUniformity.histoSetup_clustSize.strHisto_Name = strName;
            
            loadAnalysisParametersHistograms(inputFileStream, aSetupUniformity.histoSetup_clustSize);
        } //End Case: Cluster Size
        else if (0 == strTmp.compare("CLUSTTIME") ) { //Case: Cluster Time
            aSetupUniformity.histoSetup_clustTime.strHisto_Name = strName;
            
            loadAnalysisParametersHistograms(inputFileStream, aSetupUniformity.histoSetup_clustTime);
        } //End Case: Cluster Time
        else{ //Case: Undefined Behavior
            printClassMethodMsg("ParameterLoaderAnaysis","loadAnalysisParametersHistograms", ( "Histogram Type" + strName + " Not Recognized\n" ).c_str() );
            printClassMethodMsg("ParameterLoaderAnaysis","loadAnalysisParametersHistograms", "\tI Only Support Case-Insenstive versions from this set {CLUSTADC, CLUSTMULTI, CLUSTPOS, CLUSTSIZE, CLUSTTIME}\n");
        } //End Case: Undefined Behavior
    } //End Case: Setup Correct
    
    return;
} //End ParameterLoaderAnaysis::loadAnalysisParametersHistograms() - Top Level
//Uniformity
//Loads parameters defined in file read by inputFileStream and sets tehm to the aSetupUniformity
//Note this should only be called within the Uniformity heading if the user has configured the file correctly
void ParameterLoaderAnaysis::loadAnalysisParametersUniformity(ifstream &inputFileStream, AnalysisSetupUniformity &aSetupUniformity){
    //Variable Declaration
    bool bExitSuccess = false;
    
    pair<string,string> pair_strParam; //Input file is setup in <Field, Value> pairs; not used here yet but placeholder
    
    //string strField = "";   //From input file we have <Field,Value> pairs
    string strLine = "";    //Line taken from the input file
    //string strHeading = ""; //For storing detector heading
    
    vector<string> vec_strList; //For storing char separated input; not used here yet but placeholder
    
    if (bVerboseMode_IO) { //Case: User Requested Verbose Error Messages - I/O
        printClassMethodMsg("ParameterLoaderAnaysis","loadAnalysisParametersUniformity", "Found Uniformity Heading");
    } //End Case: User Requested Verbose Error Messages - I/O
    
    while ( getlineNoSpaces(inputFileStream, strLine) ) {
        //Does the user want to comment out this line?
        if ( 0 == strLine.compare(0,1,"#") ) continue;
        
        //Do we reach the end of the section?
        if ( 0 == strLine.compare(strSecEnd_Uniformity ) ) break;
        
        //Should we be storing histogram/fit setup parameters?
        if ( 0 == strLine.compare(strSecBegin_Uniformity_Fit) ) { //Case: Fit Setup
            loadAnalysisParametersFits(inputFileStream, aSetupUniformity.histoSetup_clustADC);
	    continue; //Tell it to move to the next loop iteration (e.g. line in file)
        } //End Case: Fit Setup
        else if( 0 == strLine.compare(strSecBegin_Uniformity_Histo) ){ //Case: Histo Setup
            loadAnalysisParametersHistograms(inputFileStream, aSetupUniformity);
	    continue; //Tell it to move to the next loop iteration (e.g. line in file)
        } //End Case: Histo Setup
        
        //Debugging
        cout<<"strLine: = " << strLine.c_str() << endl;
        
        //Parse the line
        pair_strParam = getParsedLine(strLine,bExitSuccess);
        
        if (bExitSuccess) { //Case: Parameter Fetched Correctly
            //transform(pair_strParam.first.begin(), pair_strParam.second.end(),pair_strParam.first.begin(),toupper);
            
            string strTmp = pair_strParam.first;
            transform(strTmp.begin(), strTmp.end(), strTmp.begin(), toupper);
            
            pair_strParam.first = strTmp;
            
            //cout<<pair_strParam.first<<"\t"<<pair_strParam.second;

            if ( 0 == pair_strParam.first.compare("CUT_ADC_MIN") ) {
                aSetupUniformity.selClust.iCut_ADCNoise = stoiSafe(pair_strParam.first,pair_strParam.second);
                //cout<<"\t"<<aSetupUniformity.selClust.iCut_ADCNoise<<endl;
            } //End Case: Minimum ADC Value
            else if( 0 == pair_strParam.first.compare("CUT_CLUSTERMULTI_MIN") ){ //Case: Min Cluster Multiplicity
                aSetupUniformity.selClust.iCut_MultiMin = stoiSafe(pair_strParam.first,pair_strParam.second);
            } //End Case: Max Cluster Multiplicity
            else if( 0 == pair_strParam.first.compare("CUT_CLUSTERMULTI_MAX") ){
                aSetupUniformity.selClust.iCut_MultiMax = stoiSafe(pair_strParam.first,pair_strParam.second);
            } //End Case:
            else if( 0 == pair_strParam.first.compare("CUT_CLUSTERSIZE_MIN") ) {
                aSetupUniformity.selClust.iCut_SizeMin = stoiSafe(pair_strParam.first,pair_strParam.second);
                //cout<<"\t"<<aSetupUniformity.selClust.iCut_SizeMin<<endl;
            } //End Case: Min Cluster Size
            else if( 0 == pair_strParam.first.compare("CUT_CLUSTERSIZE_MAX") ) {
                aSetupUniformity.selClust.iCut_SizeMax = stoiSafe(pair_strParam.first,pair_strParam.second);
                //cout<<"\t"<<aSetupUniformity.selClust.iCut_SizeMax<<endl;
            } //End Case: Max Cluster Size
            else if( 0 == pair_strParam.first.compare("CUT_CLUSTERTIME_MIN") ) {
                aSetupUniformity.selClust.iCut_TimeMin = stoiSafe(pair_strParam.first,pair_strParam.second);
                //cout<<"\t"<<aSetupUniformity.selClust.iCut_TimeMin<<endl;
            } //End Case: Min Cluster Time
            else if( 0 == pair_strParam.first.compare("CUT_CLUSTERTIME_MAX") ) {
                aSetupUniformity.selClust.iCut_TimeMax = stoiSafe(pair_strParam.first,pair_strParam.second);
                //cout<<"\t"<<aSetupUniformity.selClust.iCut_TimeMax<<endl;
            } //End Case: Max Cluster Time
            if( 0 == pair_strParam.first.compare("EVENT_FIRST") ){ //Case: ADC Spectrum Fit Equation
                aSetupUniformity.iEvt_First = stoiSafe(pair_strParam.second);
            } //End Case: ADC Spectrum Fit Equation
            else if( 0 == pair_strParam.first.compare("EVENT_TOTAL") ){ //Case: ADC Spectrum Fit Equation
                aSetupUniformity.iEvt_Total = stoiSafe(pair_strParam.second);
            } //End Case: ADC Spectrum Fit Equation
            else if( 0 == pair_strParam.first.compare("UNIFORMITY_GRANULARITY") ){ //Case: Uniformity Granularity
                aSetupUniformity.iUniformityGranularity = stoiSafe(pair_strParam.first,pair_strParam.second);
            } //End Case: Uniformity Granularity
            else if( 0 == pair_strParam.first.compare("UNIFORMITY_TOLERANCE") ){ //Case: Uniformity Granularity
                aSetupUniformity.fUniformityTolerance = stofSafe(pair_strParam.first,pair_strParam.second);
            } //End Case: Uniformity Granularity
            else{ //Case: Parameter Not Recognized
                printClassMethodMsg("ParameterLoaderAnaysis","loadAnalysisParametersUniformity","Error!!! Parameter Not Recognizd:\n");
                printClassMethodMsg("ParameterLoaderAnaysis","loadAnalysisParametersUniformity",( "\tField = " + pair_strParam.first + "\n" ).c_str() );
                printClassMethodMsg("ParameterLoaderAnaysis","loadAnalysisParametersUniformity",( "\tValue = " + pair_strParam.second + "\n" ).c_str() );
            } //End Case: Parameter Not Recognized
        } //End Case: Parameter Fetched Correctly
        else{ //Case: Parameter Failed to fetch correctly
            printClassMethodMsg("ParameterLoaderAnaysis","loadAnalysisParametersUniformity","Error!!!  I didn't parse parameter correctly\n");
            printClassMethodMsg("ParameterLoaderAnaysis","loadAnalysisParametersUniformity",("\tCurrent line: " + strLine).c_str() );
        } //End Case: Parameter Failed to fetch correctly
    } //End Loop through Uniformity Heading
    
    return;
} //End ParameterLoaderAnaysis::loadAnalysisParametersUniformity()
void ParameterLoaderAnaysis::loadAnalysisParametersFits(ifstream & inputFileStream, HistoSetup &hSetup){
    //Variable Declaration
    bool bExitSuccess = false;
    
    pair<string,string> pair_strParam; //Input file is setup in <Field, Value> pairs; not used here yet but placeholder
    
    string strLine = "";    //Line taken from the input file
    
    vector<string> vec_strList; //For storing char separated input; not used here yet but placeholder
    
    if (bVerboseMode_IO) { //Case: User Requested Verbose Error Messages - I/O
        printClassMethodMsg("ParameterLoaderAnaysis","loadAnalysisParametersFits", "Found Fit Heading");
    } //End Case: User Requested Verbose Error Messages - I/O
    
    while ( getlineNoSpaces(inputFileStream, strLine) ) {
        //Does the user want to comment out this line?
        if ( 0 == strLine.compare(0,1,"#") ) continue;
        
        //Do we reach the end of the section?
        if ( 0 == strLine.compare(strSecEnd_Uniformity_Fit ) ) break;
        
        //Debugging
        cout<<"strLine: = " << strLine.c_str() << endl;
        
        //Parse the line
        pair_strParam = getParsedLine(strLine,bExitSuccess);
        
        if (bExitSuccess) { //Case: Parameter Fetched Correctly
            //transform(pair_strParam.first.begin(), pair_strParam.second.end(),pair_strParam.first.begin(),toupper);
            
            string strTmp = pair_strParam.first;
            transform(strTmp.begin(), strTmp.end(), strTmp.begin(), toupper);
            
            pair_strParam.first = strTmp;
            
            //cout<<pair_strParam.first<<"\t"<<pair_strParam.second;
            
            if( 0 == pair_strParam.first.compare("FIT_FORMULA") ){ //Case: ADC Spectrum Fit Equation
                hSetup.strFit_Formula = pair_strParam.second;
            } //End Case: ADC Spectrum Fit Equation
            else if( 0 == pair_strParam.first.compare("FIT_OPTION") ){ //Case: ADC Spectrum Fit Equation
                hSetup.strFit_Option = pair_strParam.second;
                
                //Ensure that the result of the fit is returned in the TFitResultPtr by included the option "S" by default
                if (hSetup.strFit_Option.find("S") == std::string::npos ) {
                    hSetup.strFit_Option = hSetup.strFit_Option + "S";
                }
            } //End Case: ADC Spectrum Fit Equation
            else if( 0 == pair_strParam.first.compare("FIT_PARAM_IGUESS") ){
                hSetup.vec_strFit_ParamIGuess = getCharSeparatedList(pair_strParam.second,',');
            }
            else if( 0 == pair_strParam.first.compare("FIT_PARAM_LIMIT_MAX") ){
                hSetup.vec_strFit_ParamLimit_Max = getCharSeparatedList(pair_strParam.second, ',');
            }
            else if( 0 == pair_strParam.first.compare("FIT_PARAM_LIMIT_MIN") ){
                hSetup.vec_strFit_ParamLimit_Min = getCharSeparatedList(pair_strParam.second, ',');
            }
            else if( 0 == pair_strParam.first.compare("FIT_PARAM_MAP") ){
                hSetup.vec_strFit_ParamMeaning = Timing::getCharSeparatedList(pair_strParam.second,',');
            }
            else if( 0 == pair_strParam.first.compare("FIT_RANGE") ){
                hSetup.vec_strFit_Range = getCharSeparatedList(pair_strParam.second, ',');
            }
            else{ //Case: Parameter Not Recognized
                printClassMethodMsg("ParameterLoaderAnaysis","loadAnalysisParametersFits","Error!!! Parameter Not Recognizd:\n");
                //printClassMethodMsg("ParameterLoaderAnaysis","loadAnalysisParametersUniformity",( "\t(Field,Value) = (" + pair_strParam.first "," + pair_strParam.second + ")\n" ).c_str() );
                printClassMethodMsg("ParameterLoaderAnaysis","loadAnalysisParametersFits",( "\tField = " + pair_strParam.first + "\n" ).c_str() );
                printClassMethodMsg("ParameterLoaderAnaysis","loadAnalysisParametersFits",( "\tValue = " + pair_strParam.second + "\n" ).c_str() );
            } //End Case: Parameter Not Recognized
        } //End Case: Parameter Fetched Correctly
        else{ //Case: Parameter Failed to fetch correctly
            printClassMethodMsg("ParameterLoaderAnaysis","loadAnalysisParametersFits","Error!!!  I didn't parse parameter correctly\n");
            printClassMethodMsg("ParameterLoaderAnaysis","loadAnalysisParametersFits",("\tCurrent line: " + strLine).c_str() );
        } //End Case: Parameter Failed to fetch correctly
    } //End Loop through Fit Heading
} //End ParameterLoaderAnaysis::loadAnalysisParametersFits