C++ (Cpp) alphabet::clone示例

示例#1

文件： alignment-util.C 项目： sibonli/BAli-Phy

alignment load_next_alignment(istream& ifile, const alphabet& a, const vector<string>& names)
{
  shared_ptr<const alphabet> aa ( a.clone() );
  alignment A = load_next_alignment(ifile,aa);
  return reorder_sequences(A,names);
}

示例#2

alignment::alignment(const alphabet& a1,const string& filename) 
    :a(a1.clone())
{ 
  load(filename); 

}

示例#3

文件： alignment-util.C 项目： sibonli/BAli-Phy

alignment load_next_alignment(istream& ifile, const alphabet& a)
{
  shared_ptr<const alphabet> aa ( a.clone() );
  return load_next_alignment(ifile,aa);
}

示例#4

alignment::alignment(const alphabet& a1, const vector<sequence>& S) 
  :sequences(S),array(0,S.size()),a(a1.clone())
{}

示例#5

alignment::alignment(const alphabet& a1,int n)
  :sequences(vector<sequence>(n)),array(0,n),a(a1.clone())
{
}

示例#6

alignment::alignment(const alphabet& a1) 
  :a(a1.clone())
{}

示例#7

alignment::alignment(const alphabet& a1, const vector<sequence>& S) 
  :array(0,S.size()),sequences(S),a(a1.clone())
{
  // Do NOT load the sequences here -- this is used for constructing
  // new alignment matrices during MCMC for some reason.
}

示例#8

alignment::alignment(const alphabet& a1,int n,int L)
  :array(L,n),sequences(vector<sequence>(n)),a(a1.clone())
{
}