bool Scale::internal_execute(const Ioss::Field &field, void *data)
{
size_t count = field.transformed_count();
int components = field.transformed_storage()->component_count();
if (field.get_type() == Ioss::Field::REAL) {
double *rdata = static_cast<double *>(data);
for (size_t i = 0; i < count * components; i++) {
rdata[i] *= realMultiplier;
}
}
else if (field.get_type() == Ioss::Field::INTEGER) {
int *idata = static_cast<int *>(data);
for (size_t i = 0; i < count * components; i++) {
idata[i] *= intMultiplier;
}
}
else if (field.get_type() == Ioss::Field::INT64) {
int64_t *idata = static_cast<int64_t *>(data);
for (size_t i = 0; i < count * components; i++) {
idata[i] *= intMultiplier;
}
}
else {
}
return true;
}
int64_t Ioex::SuperElement::internal_get_field_data(const Ioss::Field& field,
void *data, size_t data_size) const
{
size_t num_to_get = field.verify(data_size);
assert(num_to_get == numDOF * numDOF);
if (field.get_name() == "Kr") {
int status = nc_get_array(filePtr, "Kr", (double*)data);
if (status != 0) {
std::ostringstream errmsg;
errmsg << "ERROR: Could not load stiffness matrix field 'Kr' from file '"
<< fileName << "'.";
IOSS_ERROR(errmsg);
}
}
else if (field.get_name() == "Mr") {
int status = nc_get_array(filePtr, "Mr", (double*)data);
if (status != 0) {
std::ostringstream errmsg;
errmsg << "ERROR: Could not load mass matrix field 'Mr' from file '"
<< fileName << "'.";
IOSS_ERROR(errmsg);
}
}
else {
std::cerr << "WARNING: " << type() << " '" << name()
<< "'. Unknown input field '" << field.get_name() << "'";
return -4;
}
return num_to_get;
}
bool Scale3D::internal_execute(const Ioss::Field &field, void *data)
{
size_t count = field.transformed_count();
assert(field.transformed_storage()->component_count() == 3);
if (field.get_type() == Ioss::Field::REAL) {
double *rdata = static_cast<double*>(data);
for (size_t i = 0; i < count*3; i+=3) {
rdata[i+0] *= realScale[0];
rdata[i+1] *= realScale[1];
rdata[i+2] *= realScale[2];
}
} else if (field.get_type() == Ioss::Field::INTEGER) {
int *idata = static_cast<int*>(data);
for (size_t i = 0; i < count*3; i+=3) {
idata[i+0] *= intScale[0];
idata[i+1] *= intScale[1];
idata[i+2] *= intScale[2];
}
} else {
}
return true;
}
int main(int argc, char *argv[])
{
#ifdef HAVE_MPI
MPI_Init(&argc, &argv);
#endif
Ioss::StorageInitializer initialize_storage;
std::string input_file = std::string(argv[argc-1]);
if (input_file == "") {
OUTPUT << "Error: No input file specified\n";
return (EXIT_FAILURE);
}
std::string cwd = "";
input_file = Ioss::Utils::local_filename(input_file, "text", cwd);
Ioex::SuperElement se(input_file, "superelement");
size_t numDOF = se.get_property("numDOF").get_int();
size_t numEIG = se.get_property("numEIG").get_int();
size_t numCon = se.get_property("numConstraints").get_int();
std::cerr << "DOF count = " << numDOF << "\n";
std::cerr << "EIG count = " << numEIG << "\n";
std::cerr << "Constraint dof count = " << numCon << "\n";
assert(numCon == numDOF - numEIG);
// List the fields on the superelement...
if (!se.field_exists("Kr")) {
std::cerr << "ERROR: Stiffness matrix field 'Kr' not found\n";
} else {
Ioss::Field kr = se.get_field("Kr");
assert(kr.raw_count() == numDOF * numDOF);
}
if (!se.field_exists("Mr")) {
std::cerr << "ERROR: Mass matrix field 'Mr' not found\n";
} else {
Ioss::Field mr = se.get_field("Mr");
assert(mr.raw_count() == numDOF * numDOF);
}
std::vector<double> stiff_mat(numDOF * numDOF);
std::vector<double> mass_mat(numDOF * numDOF);
size_t kr_size = se.get_field_data("Kr", stiff_mat);
size_t mr_size = se.get_field_data("Mr", mass_mat);
assert(kr_size == numDOF * numDOF);
assert(mr_size == numDOF * numDOF);
OUTPUT << "\nSIERRA execution successful." << std::endl;
#ifdef HAVE_MPI
MPI_Finalize();
#endif
return EXIT_SUCCESS;
}
void Ioss::Map::map_implicit_data(void *data, const Ioss::Field &field, size_t count, size_t offset) const
{
if (field.get_type() == Ioss::Field::INTEGER) {
map_implicit_data_internal(static_cast<int*>(data), count, map, offset);
} else {
map_implicit_data_internal(static_cast<int64_t*>(data), count, map, offset);
}
}
bool Tensor::internal_execute(const Ioss::Field &field, void *data)
{
assert(field.get_type() == Ioss::Field::REAL);
double *r = static_cast<double*>(data);
int count = field.raw_count();
int components = field.raw_storage()->component_count();
bool success = false;
switch (type_) {
case TRACE:
case INVARIANT1:
{
int j = 0;
for (int i=0; i < count*components; i+=components) {
r[j++] = r[i] + r[i+1] + r[i+2];
}
}
success = true;
break;
case INVARIANT2:
{
int j = 0;
for (int i=0; i < count*components; i+=components) {
r[j++] = r[i+3]*r[i+3] + r[i+4]*r[i+4] + r[i+5]*r[i+5] -
(r[i+0]*r[i+1] + r[i+1]*r[i+2] + r[i+0]*r[i+2]);
}
}
success = true;
break;
case INVARIANT3:
case MAGNITUDE:
case DEVIATOR:
case SPHERICAL:
case INVARIANTS:
success = false;
break;
default:
success = false;
}
return success;
}
bool VectorMagnitude::internal_execute(const Ioss::Field &field, void *data)
{
double *rdata = static_cast<double *>(data);
size_t count = field.transformed_count();
if (field.transformed_storage()->component_count() == 3) {
int j = 0;
for (size_t i = 0; i < count; i++) {
rdata[i] = std::sqrt(rdata[j] * rdata[j] + rdata[j + 1] * rdata[j + 1] +
rdata[j + 2] * rdata[j + 2]);
j += 3;
}
}
else {
int j = 0;
for (size_t i = 0; i < count; i++) {
rdata[i] = std::sqrt(rdata[j] * rdata[j] + rdata[j + 1] * rdata[j + 1]);
j += 2;
}
}
return true;
}
// ========================================================================
void process_nodeblocks(Ioss::Region ®ion, stk::mesh::MetaData &meta)
{
const Ioss::NodeBlockContainer& node_blocks = region.get_node_blocks();
assert(node_blocks.size() == 1);
Ioss::NodeBlock *nb = node_blocks[0];
assert(nb->field_exists("mesh_model_coordinates"));
Ioss::Field coordinates = nb->get_field("mesh_model_coordinates");
int spatial_dim = coordinates.transformed_storage()->component_count();
stk::mesh::Field<double,stk::mesh::Cartesian> & coord_field =
meta.declare_field<stk::mesh::Field<double,stk::mesh::Cartesian> >(stk::topology::NODE_RANK, "coordinates");
stk::mesh::put_field( coord_field, meta.universal_part(),
spatial_dim);
/** \todo IMPLEMENT truly handle fields... For this case we are
* just defining a field for each transient field that is present
* in the mesh...
*/
stk::io::define_io_fields(nb, Ioss::Field::TRANSIENT, meta.universal_part(),stk::topology::NODE_RANK);
}
void Ioss::Map::map_data(void *data, const Ioss::Field &field, size_t count) const
{
if (!is_sequential(map)) {
if (field.get_type() == Ioss::Field::INTEGER) {
int *datum = static_cast<int*>(data);
for (size_t i=0; i < count; i++)
datum[i] = map[datum[i]];
} else {
int64_t *datum = static_cast<int64_t*>(data);
for (size_t i=0; i < count; i++)
datum[i] = map[datum[i]];
}
}
}
void Ioss::Map::reverse_map_data(void *data, const Ioss::Field &field, size_t count) const
{
assert(!map.empty());
if (!is_sequential(map)) {
if (field.get_type() == Ioss::Field::INTEGER) {
int* connect = static_cast<int*>(data);
for (size_t i=0; i < count; i++) {
int global_id = connect[i];
connect[i] = global_to_local(global_id, true);
}
} else {
int64_t* connect = static_cast<int64_t*>(data);
for (size_t i=0; i < count; i++) {
int64_t global_id = connect[i];
connect[i] = global_to_local(global_id, true);
}
}
}
}
int64_t DatabaseIO::put_field_internal(const Ioss::Region* region, const Ioss::Field& field,
void *data, size_t data_size) const
{
initialize(region);
Ioss::Field::RoleType role = field.get_role();
int64_t num_to_get = field.verify(data_size);
if ((role == Ioss::Field::TRANSIENT || role == Ioss::Field::REDUCTION) &&
num_to_get == 1) {
int ncomp = field.transformed_storage()->component_count();
if (legend_ != NULL && layout_ != NULL) {
if (ncomp == 1) {
legend_->add_legend(field.get_name());
}
else {
const Ioss::VariableType *var_type = field.transformed_storage();
for (int i=0; i < ncomp; i++) {
std::string var_name = var_type->label_name(field.get_name(), i+1, '_');
legend_->add_legend(var_name);
}
}
}
if (field.get_type() == Ioss::Field::STRING) {
// Assume that if layout_ is NULL, then we want special one-line output.
if (layout_ == NULL) {
Layout layout(false, 0, separator_, fieldWidth_);
layout.add_literal("-");
layout.add_literal(time_stamp(tsFormat));
layout.add_literal(" ");
layout.add_literal(*(std::string*)data);
if (logStream != NULL)
*logStream << layout << std::endl;
} else {
layout_->add(field.get_name(), *(std::string*)data);
}
} else {
if (layout_ == NULL) {
std::ostringstream errmsg;
errmsg << "INTERNAL ERROR: Unexpected NULL layout.\n";
IOSS_ERROR(errmsg);
}
if (field.get_type() == Ioss::Field::INTEGER) {
assert(field.transformed_count() == 1);
int *i_data = (int*)data;
std::vector<int> idata(ncomp);
for (int i=0; i < ncomp; i++) {
idata[i] = i_data[i];
}
layout_->add(field.get_name(), idata);
} else {
std::vector<double> rdata(ncomp);
double *r_data = (double*)data;
for (int i=0; i < ncomp; i++) {
rdata[i] = r_data[i];
}
layout_->add(field.get_name(), rdata);
}
}
} else {
std::ostringstream errmsg;
errmsg << "ERROR: Can not handle non-TRANSIENT or non-REDUCTION fields on regions.\n";
IOSS_ERROR(errmsg);
}
return num_to_get;
}
int64_t Ioex::SuperElement::internal_get_field_data(const Ioss::Field &field, void *data,
size_t data_size) const
{
size_t num_to_get = field.verify(data_size);
if (field.get_name() == "cbmap") {
assert(num_to_get == 2 * num_nodes * num_dim);
int status = nc_get_array(filePtr, "cbmap", reinterpret_cast<double *>(data));
if (status != 0) {
std::ostringstream errmsg;
errmsg << "ERROR: Could not load coodintate data field 'cbmap' from file '" << fileName
<< "'.";
IOSS_ERROR(errmsg);
}
}
else if (field.get_name() == "node_num_map") {
assert(num_to_get == num_nodes);
int status = nc_get_array(filePtr, "node_num_map", reinterpret_cast<double *>(data));
if (status != 0) {
std::ostringstream errmsg;
errmsg << "ERROR: Could not load coodintate data field 'node_num_map' from file '" << fileName
<< "'.";
IOSS_ERROR(errmsg);
}
}
else if (field.get_name() == "coordx") {
assert(num_to_get == num_nodes);
int status = nc_get_array(filePtr, "coordx", reinterpret_cast<double *>(data));
if (status != 0) {
std::ostringstream errmsg;
errmsg << "ERROR: Could not load coodintate data field 'coordx' from file '" << fileName
<< "'.";
IOSS_ERROR(errmsg);
}
}
else if (field.get_name() == "coordy") {
assert(num_to_get == num_nodes);
int status = nc_get_array(filePtr, "coordy", reinterpret_cast<double *>(data));
if (status != 0) {
std::ostringstream errmsg;
errmsg << "ERROR: Could not load coodintate data field 'coordy' from file '" << fileName
<< "'.";
IOSS_ERROR(errmsg);
}
}
else if (field.get_name() == "coordz") {
assert(num_to_get == num_nodes);
int status = nc_get_array(filePtr, "coordz", reinterpret_cast<double *>(data));
if (status != 0) {
std::ostringstream errmsg;
errmsg << "ERROR: Could not load coodintate data field 'coordz' from file '" << fileName
<< "'.";
IOSS_ERROR(errmsg);
}
}
else if (field.get_name() == "Kr") {
assert(num_to_get == numDOF * numDOF);
int status = nc_get_array(filePtr, "Kr", reinterpret_cast<double *>(data));
if (status != 0) {
std::ostringstream errmsg;
errmsg << "ERROR: Could not load stiffness matrix field 'Kr' from file '" << fileName << "'.";
IOSS_ERROR(errmsg);
}
}
else if (field.get_name() == "Mr") {
assert(num_to_get == numDOF * numDOF);
int status = nc_get_array(filePtr, "Mr", reinterpret_cast<double *>(data));
if (status != 0) {
std::ostringstream errmsg;
errmsg << "ERROR: Could not load mass matrix field 'Mr' from file '" << fileName << "'.";
IOSS_ERROR(errmsg);
}
}
else {
std::cerr << "WARNING: " << type() << " '" << name() << "'. Unknown input field '"
<< field.get_name() << "'";
return -4;
}
return num_to_get;
}
