/**
* This method will, using the NearestNeighbours methods, expand our view on the nearby detectors from
* the standard eight closest that are recorded in the graph.
* @param nearest :: neighbours found in previous requests
* @param spec :: pointer to the central detector, for calculating distances
* @param noNeighbours :: number of neighbours that must be found (in total, including those already found)
* @param bbox :: BoundingBox object representing the search region
* @return true if neighbours were found matching the parameters, false otherwise
*/
bool SpatialGrouping::expandNet(std::map<specid_t,Mantid::Kernel::V3D> & nearest, specid_t spec,
const size_t & noNeighbours, const Mantid::Geometry::BoundingBox & bbox)
{
const size_t incoming = nearest.size();
Mantid::Geometry::IDetector_const_sptr det = m_detectors[spec];
std::map<specid_t, Mantid::Kernel::V3D> potentials;
// Special case for first run for this detector
if ( incoming == 0 )
{
potentials = inputWorkspace->getNeighbours(det.get());
}
else
{
for ( std::map<specid_t,Mantid::Kernel::V3D>::iterator nrsIt = nearest.begin(); nrsIt != nearest.end(); ++nrsIt )
{
std::map<specid_t, Mantid::Kernel::V3D> results;
results = inputWorkspace->getNeighbours(m_detectors[nrsIt->first].get());
for ( std::map<specid_t, Mantid::Kernel::V3D>::iterator resIt = results.begin(); resIt != results.end(); ++resIt )
{
potentials[resIt->first] = resIt->second;
}
}
}
for ( std::map<specid_t,Mantid::Kernel::V3D>::iterator potIt = potentials.begin(); potIt != potentials.end(); ++potIt )
{
// We do not want to include the detector in it's own list of nearest neighbours
if ( potIt->first == spec ) { continue; }
// Or detectors that are already in the nearest list passed into this function
std::map<detid_t, Mantid::Kernel::V3D>::iterator nrsIt = nearest.find(potIt->first);
if ( nrsIt != nearest.end() ) { continue; }
// We should not include detectors already included in a group (or monitors for that matter)
std::set<specid_t>::iterator inclIt = m_included.find(potIt->first);
if ( inclIt != m_included.end() ) { continue; }
// If we get this far, we need to determine if the detector is of a suitable distance
Mantid::Kernel::V3D pos = m_detectors[potIt->first]->getPos();
if ( ! bbox.isPointInside(pos) ) { continue; }
// Elsewise, it's all good.
nearest[potIt->first] = potIt->second;
}
if ( nearest.size() == incoming ) { return false; }
if ( nearest.size() > noNeighbours )
{
sortByDistance(nearest, noNeighbours);
}
return true;
}
/**
* Getter for the masked state of the workspace.
* @returns True if the detector/detector-group at the workspace index is
* masked, or if there is no detector at that index.
*/
bool MatrixWorkspaceMDIterator::getIsMasked() const {
Mantid::Geometry::IDetector_const_sptr det =
m_ws->getDetector(m_workspaceIndex);
if (det != nullptr) {
return det->isMasked();
} else {
return true; // TODO. Check whether it's better to return true or false
// under these circumstances.
}
}
void InstrumentWindowPickTab::updateSelectionInfo(int detid)
{
if (m_instrWindow->blocked())
{
m_selectionInfoDisplay->clear();
return;
}
if (detid >= 0)
{
InstrumentActor* instrActor = m_instrWindow->getInstrumentActor();
Mantid::Geometry::IDetector_const_sptr det = instrActor->getInstrument()->getDetector(detid);
QString text = "Selected detector: " + QString::fromStdString(det->getName()) + "\n";
text += "Detector ID: " + QString::number(detid) + '\n';
QString wsIndex;
try {
wsIndex = QString::number(instrActor->getWorkspaceIndex(detid));
updatePlot(detid); // Update the plot if the detector links to some data
} catch (Mantid::Kernel::Exception::NotFoundError) {
// Detector doesn't have a workspace index relating to it
wsIndex = "None";
m_plot->clearCurve(); // Clear the plot window
m_plot->replot();
}
text += "Workspace index: " + wsIndex + '\n';
Mantid::Kernel::V3D pos = det->getPos();
text += "xyz: " + QString::number(pos.X()) + "," + QString::number(pos.Y()) + "," + QString::number(pos.Z()) + '\n';
double r,t,p;
pos.getSpherical(r,t,p);
text += "rtp: " + QString::number(r) + "," + QString::number(t) + "," + QString::number(p) + '\n';
Mantid::Geometry::ICompAssembly_const_sptr parent = boost::dynamic_pointer_cast<const Mantid::Geometry::ICompAssembly>(det->getParent());
if (parent)
{
QString textpath;
while (parent)
{
textpath="/"+QString::fromStdString(parent->getName())+textpath;
parent=boost::dynamic_pointer_cast<const Mantid::Geometry::ICompAssembly>(parent->getParent());
}
text += "Component path:" +textpath+"/"+ QString::fromStdString(det->getName()) +'\n';
}
const double integrated = instrActor->getIntegratedCounts(detid);
const QString counts = integrated == -1.0 ? "N/A" : QString::number(integrated);
text += "Counts: " + counts + '\n';
m_selectionInfoDisplay->setText(text);
}
else
{
m_selectionInfoDisplay->clear();
m_plot->clearCurve(); // Clear the plot window
m_plot->replot();
}
}
/*
* Define edges for each instrument by masking. For CORELLI, tubes 1 and 16, and
*pixels 0 and 255.
* Get Q in the lab frame for every peak, call it C
* For every point on the edge, the trajectory in reciprocal space is a straight
*line, going through O=V3D(0,0,0).
* Calculate a point at a fixed momentum, say k=1. Q in the lab frame
*E=V3D(-k*sin(tt)*cos(ph),-k*sin(tt)*sin(ph),k-k*cos(ph)).
* Normalize E to 1: E=E*(1./E.norm())
*
* @param inst: instrument
*/
void IntegrateEllipsoids::calculateE1(Geometry::Instrument_const_sptr inst) {
std::vector<detid_t> detectorIDs = inst->getDetectorIDs();
for (auto &detectorID : detectorIDs) {
Mantid::Geometry::IDetector_const_sptr det = inst->getDetector(detectorID);
if (det->isMonitor())
continue; // skip monitor
if (!det->isMasked())
continue; // edge is masked so don't check if not masked
double tt1 = det->getTwoTheta(V3D(0, 0, 0), V3D(0, 0, 1)); // two theta
double ph1 = det->getPhi(); // phi
V3D E1 = V3D(-std::sin(tt1) * std::cos(ph1), -std::sin(tt1) * std::sin(ph1),
1. - std::cos(tt1)); // end of trajectory
E1 = E1 * (1. / E1.norm()); // normalize
E1Vec.push_back(E1);
}
}
/**
* The main method to calculate the ring profile for workspaces based on
*instruments.
*
* It will iterate over all the spectrum inside the workspace.
* For each spectrum, it will use the RingProfile::getBinForPixel method to
*identify
* where, in the output_bins, the sum of all the spectrum values should be
*placed in.
*
* @param inputWS: pointer to the input workspace
* @param output_bins: the reference to the vector to be filled with the
*integration values
*/
void RingProfile::processInstrumentRingProfile(
const API::MatrixWorkspace_sptr inputWS, std::vector<double> &output_bins) {
for (int i = 0; i < static_cast<int>(inputWS->getNumberHistograms()); i++) {
m_progress->report("Computing ring bins positions for detectors");
// for the detector based, the positions will be taken from the detector
// itself.
try {
Mantid::Geometry::IDetector_const_sptr det = inputWS->getDetector(i);
// skip monitors
if (det->isMonitor()) {
continue;
}
// this part will be executed if the instrument is attached to the
// workspace
// get the bin position
int bin_n = getBinForPixel(det);
if (bin_n < 0) // -1 is the agreement for an invalid bin, or outside the
// ring being integrated
continue;
g_log.debug() << "Bin for the index " << i << " = " << bin_n
<< " Pos = " << det->getPos() << std::endl;
// get the reference to the spectrum
auto spectrum_pt = inputWS->getSpectrum(i);
const MantidVec &refY = spectrum_pt->dataY();
// accumulate the values of this spectrum inside this bin
for (size_t sp_ind = 0; sp_ind < inputWS->blocksize(); sp_ind++)
output_bins[bin_n] += refY[sp_ind];
} catch (Kernel::Exception::NotFoundError &ex) {
g_log.information() << "It found that detector for " << i
<< " is not valid. " << ex.what() << std::endl;
continue;
}
}
}
/** Executes the algorithm
*
*/
void SumNeighbours::exec()
{
// Try and retrieve the optional properties
SumX = getProperty("SumX");
SumY = getProperty("SumY");
// Get the input workspace
Mantid::API::MatrixWorkspace_sptr inWS = getProperty("InputWorkspace");
Mantid::Geometry::IDetector_const_sptr det = inWS->getDetector(0);
// Check if grandparent is rectangular detector
boost::shared_ptr<const Geometry::IComponent> parent = det->getParent()->getParent();
boost::shared_ptr<const RectangularDetector> rect = boost::dynamic_pointer_cast<const RectangularDetector>(parent);
Mantid::API::MatrixWorkspace_sptr outWS;
IAlgorithm_sptr smooth = createChildAlgorithm("SmoothNeighbours");
smooth->setProperty("InputWorkspace", inWS);
if (rect)
{
smooth->setProperty("SumPixelsX",SumX);
smooth->setProperty("SumPixelsY",SumY);
}
else
{
smooth->setProperty<std::string>("RadiusUnits","NumberOfPixels");
smooth->setProperty("Radius",static_cast<double>(SumX*SumY*SumX*SumY));
smooth->setProperty("NumberOfNeighbours",SumX*SumY*SumX*SumY*4);
smooth->setProperty("SumNumberOfNeighbours",SumX*SumY);
}
smooth->executeAsChildAlg();
// Get back the result
outWS = smooth->getProperty("OutputWorkspace");
//Cast to the matrixOutputWS and save it
this->setProperty("OutputWorkspace", outWS);
}
/**
* Here is the main logic to perform the transformation, to calculate the bin position in degree for each detector.
*
* The first part of the method is to check if the detector is inside the ring defined as minRadio and maxRadio.
*
* To do this, it checks the projected distance between the centre and the detector position. If this projected
* distance is outside the defined ring, it returns -1.
*
* For those detectors that lay inside the ring, it will calculate the phi angle. And than find the slot where
* this angle should be placed (bin)
* @param det: pointer to the detector from which the positions will be taken
* @return bin position
*/
int RingProfile::getBinForPixel(Mantid::Geometry::IDetector_const_sptr det ){
using Mantid::Kernel::V3D;
V3D origin(centre_x, centre_y, centre_z);
V3D diff_vector = det->getPos()-origin;
double radio, theta, phi;
// get the spherical values of the vector from center to detector position
diff_vector.getSpherical(radio, theta, phi);
// the distance from the centre to the ring will be calculated as radio * sin(theta).
double effect_distance = radio * sin(theta*M_PI/180);
// g_log.debug() << "effect Distance = " << effect_distance << std::endl;
// check if it is inside the ring defined by min_radius, max_radius
if ( effect_distance < min_radius || effect_distance > max_radius || effect_distance == 0)
return -1;
// get the angle
// g_log.debug() << "The real angle is " << phi << std::endl;
return fromAngleToBin(phi);
}
/**
* Update the info window with information for a selected detector.
* @param detid :: ID of the selected detector.
*/
void InstrumentWindowPickTab::updateSelectionInfo(int detid)
{
if (m_freezePlot)
{ // freeze the plot for one update
m_freezePlot = false;
return;
}
if (m_instrWindow->blocked())
{
m_selectionInfoDisplay->clear();
return;
}
if (detid >= 0)
{
InstrumentActor* instrActor = m_instrWindow->getInstrumentActor();
Mantid::Geometry::IDetector_const_sptr det = instrActor->getInstrument()->getDetector(detid);
QString text = "Selected detector: " + QString::fromStdString(det->getName()) + "\n";
text += "Detector ID: " + QString::number(detid) + '\n';
QString wsIndex;
try {
wsIndex = QString::number(instrActor->getWorkspaceIndex(detid));
updatePlot(detid); // Update the plot if the detector links to some data
} catch (Mantid::Kernel::Exception::NotFoundError &) {
// Detector doesn't have a workspace index relating to it
wsIndex = "None";
m_plot->clearCurve(); // Clear the plot window
m_plot->replot();
}
text += "Workspace index: " + wsIndex + '\n';
Mantid::Kernel::V3D pos = det->getPos();
text += "xyz: " + QString::number(pos.X()) + "," + QString::number(pos.Y()) + "," + QString::number(pos.Z()) + '\n';
double r,t,p;
pos.getSpherical(r,t,p);
text += "rtp: " + QString::number(r) + "," + QString::number(t) + "," + QString::number(p) + '\n';
Mantid::Geometry::ICompAssembly_const_sptr parent = boost::dynamic_pointer_cast<const Mantid::Geometry::ICompAssembly>(det->getParent());
if (parent)
{
QString textpath;
while (parent)
{
textpath="/"+QString::fromStdString(parent->getName())+textpath;
parent=boost::dynamic_pointer_cast<const Mantid::Geometry::ICompAssembly>(parent->getParent());
}
text += "Component path:" +textpath+"/"+ QString::fromStdString(det->getName()) +'\n';
}
const double integrated = instrActor->getIntegratedCounts(detid);
const QString counts = integrated == -1.0 ? "N/A" : QString::number(integrated);
text += "Counts: " + counts + '\n';
QString xUnits;
if (m_selectionType > SingleDetectorSelection && !m_plotSum)
{
switch(m_tubeXUnits)
{
case DETECTOR_ID:
xUnits = "Detector ID";
break;
case LENGTH:
xUnits = "Length";
break;
case PHI:
xUnits = "Phi";
break;
default:
xUnits = "Detector ID";
}
}
else
{
xUnits = QString::fromStdString(instrActor->getWorkspace()->getAxis(0)->unit()->caption());
//xUnits = "Time of flight";
}
text += "X units: " + xUnits + '\n';
m_selectionInfoDisplay->setText(text);
}
else
{
m_selectionInfoDisplay->clear();
m_plot->clearCurve(); // Clear the plot window
m_plot->replot();
}
}