// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
int AttributeMatrix::readAttributeArraysFromHDF5(hid_t amGid, bool preflight, AttributeMatrixProxy& attrMatProxy)
{
int err = 0;
QMap<QString, DataArrayProxy> dasToRead = attrMatProxy.dataArrays;
QString classType;
for (QMap<QString, DataArrayProxy>::iterator iter = dasToRead.begin(); iter != dasToRead.end(); ++iter)
{
//qDebug() << "Reading the " << iter->name << " Array from the " << m_Name << " Attribute Matrix \n";
if(iter->flag == DREAM3D::Unchecked)
{
continue;
}
QH5Lite::readStringAttribute(amGid, iter->name, DREAM3D::HDF5::ObjectType, classType);
// qDebug() << groupName << " Array: " << *iter << " with C++ ClassType of " << classType << "\n";
IDataArray::Pointer dPtr = IDataArray::NullPointer();
if(classType.startsWith("DataArray") == true)
{
dPtr = H5DataArrayReader::ReadIDataArray(amGid, iter->name, preflight);
}
else if(classType.compare("StringDataArray") == 0)
{
dPtr = H5DataArrayReader::ReadStringDataArray(amGid, iter->name, preflight);
}
else if(classType.compare("vector") == 0)
{
}
else if(classType.compare("NeighborList<T>") == 0)
{
dPtr = H5DataArrayReader::ReadNeighborListData(amGid, iter->name, preflight);
}
else if(classType.compare("Statistics") == 0)
{
StatsDataArray::Pointer statsData = StatsDataArray::New();
statsData->setName(iter->name);
statsData->readH5Data(amGid);
dPtr = statsData;
}
// else if ( (iter->name).compare(DREAM3D::EnsembleData::Statistics) == 0)
// {
// StatsDataArray::Pointer statsData = StatsDataArray::New();
// statsData->setName(DREAM3D::EnsembleData::Statistics);
// statsData->readH5Data(amGid);
// dPtr = statsData;
// }
if (NULL != dPtr.get())
{
addAttributeArray(dPtr->getName(), dPtr);
}
}
H5Gclose(amGid); // Close the Cell Group
return err;
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
int AttributeMatrix::addAttributeArrayFromHDF5Path(hid_t gid, QString name, bool preflight)
{
int err = 0;
QString classType;
QH5Lite::readStringAttribute(gid, name, DREAM3D::HDF5::ObjectType, classType);
// qDebug() << groupName << " Array: " << *iter << " with C++ ClassType of " << classType << "\n";
IDataArray::Pointer dPtr = IDataArray::NullPointer();
if(classType.startsWith("DataArray") == true)
{
dPtr = H5DataArrayReader::ReadIDataArray(gid, name, preflight);
if(preflight == true)
{
dPtr->resize(getNumTuples());
}
}
else if(classType.compare("StringDataArray") == 0)
{
dPtr = H5DataArrayReader::ReadStringDataArray(gid, name, preflight);
if (preflight == true)
{
dPtr->resize(getNumTuples());
}
}
else if(classType.compare("vector") == 0)
{
}
else if(classType.compare("NeighborList<T>") == 0)
{
dPtr = H5DataArrayReader::ReadNeighborListData(gid, name, preflight);
if (preflight == true)
{
dPtr->resize(getNumTuples());
}
}
else if ( name.compare(DREAM3D::EnsembleData::Statistics) == 0)
{
StatsDataArray::Pointer statsData = StatsDataArray::New();
statsData->setName(DREAM3D::EnsembleData::Statistics);
statsData->readH5Data(gid);
dPtr = statsData;
if (preflight == true)
{
dPtr->resize(getNumTuples());
}
}
if (NULL != dPtr.get())
{
addAttributeArray(dPtr->getName(), dPtr);
}
return err;
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
StatsDataArray::Pointer StatsDataArray::CreateArray(size_t numTuples, int rank, size_t* dims, const QString& name, bool allocate)
{
if (name.isEmpty() == true)
{
return NullPointer();
}
StatsDataArray::Pointer ptr = StatsDataArray::New();
ptr->setName(name);
std::vector<unsigned int> phase_types(numTuples, DREAM3D::PhaseType::UnknownPhaseType);
if(allocate) { ptr->fillArrayWithNewStatsData(numTuples, &(phase_types.front()) ); }
return ptr;
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
StatsDataArray::Pointer StatsDataArray::CreateArray(QVector<size_t> tDims, QVector<size_t> cDims, const QString& name, bool allocate)
{
if (name.isEmpty() == true)
{
return NullPointer();
}
size_t numTuples = tDims[0];
qint32 size = tDims.size();
for(qint32 iter = 1; iter < size; iter++)
{
numTuples *= tDims[iter];
}
StatsDataArray::Pointer ptr = StatsDataArray::New();
ptr->setName(name);
std::vector<unsigned int> phase_types(numTuples, DREAM3D::PhaseType::UnknownPhaseType);
if(allocate) { ptr->fillArrayWithNewStatsData(numTuples, &(phase_types.front()) ); }
return ptr;
}