CRef<SInternalData>
SplitQuery_CreateChunkData(CRef<IQueryFactory> qf,
CRef<CBlastOptions> options,
CRef<SInternalData> full_data,
bool is_multi_threaded /* = false */)
{
BlastSeqSrc* seqsrc =
BlastSeqSrcCopy(full_data->m_SeqSrc->GetPointer());
CRef<SBlastSetupData> setup_data =
BlastSetupPreliminarySearchEx(
qf, options,
CRef<objects::CPssmWithParameters>(),
seqsrc, is_multi_threaded);
BlastSeqSrcResetChunkIterator(seqsrc);
setup_data->m_InternalData->m_SeqSrc.Reset(new TBlastSeqSrc(seqsrc,
BlastSeqSrcFree));
_ASSERT(setup_data->m_QuerySplitter->IsQuerySplit() == false);
if (full_data->m_ProgressMonitor->Get()) {
setup_data->m_InternalData->m_FnInterrupt = full_data->m_FnInterrupt;
SBlastProgress* bp =
SBlastProgressNew(full_data->m_ProgressMonitor->Get()->user_data);
setup_data->m_InternalData->m_ProgressMonitor.Reset(new CSBlastProgress(bp));
}
return setup_data->m_InternalData;
}
void
CBlastPrelimSearch::x_Init(CRef<IQueryFactory> query_factory,
CRef<CBlastOptions> options,
CConstRef<objects::CPssmWithParameters> pssm,
BlastSeqSrc* seqsrc )
{
CRef<SBlastSetupData> setup_data =
BlastSetupPreliminarySearchEx(query_factory, options, pssm, seqsrc,
IsMultiThreaded());
m_InternalData = setup_data->m_InternalData;
copy(setup_data->m_Masks.begin(), setup_data->m_Masks.end(),
back_inserter(m_MasksForAllQueries));
m_Messages = setup_data->m_Messages;
}