Exemplos de BlastSetupPreliminarySearchEx em C++ (Cpp)

Exemplo n.º 1

Arquivo: split_query_aux_priv.cpp Projeto: kenongit/sequencing

CRef<SInternalData>
SplitQuery_CreateChunkData(CRef<IQueryFactory> qf,
                           CRef<CBlastOptions> options,
                           CRef<SInternalData> full_data,
                           bool is_multi_threaded /* = false */)
{
    BlastSeqSrc* seqsrc = 
        BlastSeqSrcCopy(full_data->m_SeqSrc->GetPointer());
    CRef<SBlastSetupData> setup_data = 
        BlastSetupPreliminarySearchEx(
                qf, options, 
                CRef<objects::CPssmWithParameters>(),
                seqsrc, is_multi_threaded);
    BlastSeqSrcResetChunkIterator(seqsrc);
    setup_data->m_InternalData->m_SeqSrc.Reset(new TBlastSeqSrc(seqsrc, 
                                               BlastSeqSrcFree));
    
    _ASSERT(setup_data->m_QuerySplitter->IsQuerySplit() == false);

    if (full_data->m_ProgressMonitor->Get()) {
        setup_data->m_InternalData->m_FnInterrupt = full_data->m_FnInterrupt;
        SBlastProgress* bp =
             SBlastProgressNew(full_data->m_ProgressMonitor->Get()->user_data);
        setup_data->m_InternalData->m_ProgressMonitor.Reset(new CSBlastProgress(bp));
    }
    return setup_data->m_InternalData;
}

Exemplo n.º 2

Arquivo: prelim_stage.cpp Projeto: Yeyke/H-BLAST

void
CBlastPrelimSearch::x_Init(CRef<IQueryFactory> query_factory,
                           CRef<CBlastOptions> options,
                           CConstRef<objects::CPssmWithParameters> pssm,
                           BlastSeqSrc* seqsrc )
{
    CRef<SBlastSetupData> setup_data =
        BlastSetupPreliminarySearchEx(query_factory, options, pssm, seqsrc,
                                      IsMultiThreaded());
    m_InternalData = setup_data->m_InternalData;
    copy(setup_data->m_Masks.begin(), setup_data->m_Masks.end(),
         back_inserter(m_MasksForAllQueries));
    m_Messages = setup_data->m_Messages;
}