bool isSharedPath(const std::string& projectPath,
const core::FilePath& userHomePath)
{
#ifndef _WIN32
// ensure this is a real path
FilePath projectDir = FilePath::resolveAliasedPath(projectPath,
userHomePath);
if (!projectDir.exists())
return false;
struct stat st;
if (::stat(projectDir.absolutePath().c_str(), &st) == 0)
{
// consider this project to be shared if we aren't the owner
if (st.st_uid != ::geteuid())
{
return true;
}
}
else
{
Error error = systemError(errno, ERROR_LOCATION);
error.addProperty("path", projectDir.absolutePath());
LOG_ERROR(error);
}
#endif
return false;
}
void addToSystemPath(const FilePath& path, bool prepend)
{
std::string systemPath = system::getenv("PATH");
if (prepend)
systemPath = path.absolutePath() + ":" + systemPath;
else
systemPath = systemPath + ":" + path.absolutePath();
system::setenv("PATH", systemPath);
}
Error readStringFromFile(const FilePath& filePath,
std::string* pStr,
string_utils::LineEnding lineEnding)
{
using namespace boost::system::errc ;
// open file
boost::shared_ptr<std::istream> pIfs;
Error error = filePath.open_r(&pIfs);
if (error)
return error;
try
{
// set exception mask (required for proper reporting of errors)
pIfs->exceptions(std::istream::failbit | std::istream::badbit);
// copy file to string stream
std::ostringstream ostr;
boost::iostreams::copy(*pIfs, ostr);
*pStr = ostr.str();
string_utils::convertLineEndings(pStr, lineEnding);
// return success
return Success();
}
catch(const std::exception& e)
{
Error error = systemError(boost::system::errc::io_error,
ERROR_LOCATION);
error.addProperty("what", e.what());
error.addProperty("path", filePath.absolutePath());
return error;
}
}
Error writeStringToFile(const FilePath& filePath,
const std::string& str,
string_utils::LineEnding lineEnding)
{
using namespace boost::system::errc ;
// open file
boost::shared_ptr<std::ostream> pOfs;
Error error = filePath.open_w(&pOfs);
if (error)
return error;
try
{
// set exception mask (required for proper reporting of errors)
pOfs->exceptions(std::ostream::failbit | std::ostream::badbit);
// copy string to file
std::string normalized = str;
string_utils::convertLineEndings(&normalized, lineEnding);
std::istringstream istr(normalized);
boost::iostreams::copy(istr, *pOfs);
// return success
return Success();
}
catch(const std::exception& e)
{
Error error = systemError(boost::system::errc::io_error,
ERROR_LOCATION);
error.addProperty("what", e.what());
error.addProperty("path", filePath.absolutePath());
return error;
}
}
FilePath texFilePath(const std::string& logPath, const FilePath& compileDir)
{
// some tex compilers report file names with absolute paths and some
// report them relative to the compilation directory -- on Posix use
// realPath to get a clean full path back -- note the fact that we
// don't do this on Windows is a tacit assumption that Windows TeX logs
// are either absolute or don't require interpretation of .., etc.
FilePath path = compileDir.complete(logPath);
#ifdef _WIN32
return path;
#else
FilePath realPath;
Error error = core::system::realPath(path.absolutePath(), &realPath);
if (error)
{
LOG_ERROR(error);
return path;
}
else
{
return realPath;
}
#endif
}
bool validate(const FilePath& userHomePath,
bool projectSharingEnabled) const
{
// ensure the scratch path and properties paths exist
if (!scratchPath_.exists() || !propertiesPath_.exists())
return false;
// ensure the properties are there
if (project().empty() || workingDir().empty() || (lastUsed() == 0))
return false;
// for projects validate that the base directory still exists
std::string theProject = project();
if (theProject != kProjectNone)
{
FilePath projectDir = FilePath::resolveAliasedPath(theProject,
userHomePath);
if (!projectDir.exists())
return false;
// check for project file
FilePath projectPath = r_util::projectFromDirectory(projectDir);
if (!projectPath.exists())
return false;
// if we got this far the scope is valid, do one final check for
// trying to open a shared project if sharing is disabled
if (!projectSharingEnabled &&
r_util::isSharedPath(projectPath.absolutePath(), userHomePath))
return false;
}
// validated!
return true;
}
inline Error changeFileMode(const FilePath& filePath, FileMode fileMode)
{
mode_t mode ;
switch(fileMode)
{
case UserReadWriteMode:
mode = S_IRUSR | S_IWUSR;
break;
case UserReadWriteGroupReadMode:
mode = S_IRUSR | S_IWUSR | S_IRGRP ;
break;
case EveryoneReadWriteMode:
mode = S_IRUSR | S_IWUSR | S_IRGRP | S_IWGRP | S_IROTH | S_IWOTH;
break;
case EveryoneReadWriteExecuteMode:
mode = S_IRWXU | S_IRWXG | S_IRWXO;
break;
default:
return systemError(ENOTSUP, ERROR_LOCATION);
}
// change the mode
errno = 0;
if (::chmod(filePath.absolutePath().c_str(), mode) < 0)
return systemError(errno, ERROR_LOCATION);
else
return Success();
}
Error SourceManager::source(const FilePath& filePath, bool local)
{
std::string localPrefix = local ? "local(" : "";
std::string localParam = local ? "TRUE" : "FALSE" ;
std::string localSuffix = local ? ")" : "";
// do \ escaping (for windows)
std::string path = filePath.absolutePath();
boost::algorithm::replace_all(path, "\\", "\\\\");
// Build the code. If this build is targeted for debugging, keep the source
// code around; otherwise, turn it off to conserve memory and expose fewer
// internals to the user.
std::string rCode = localPrefix + "source(\""
+ path + "\", " +
"local=" + localParam + ", " +
"echo=FALSE, " +
"verbose=FALSE, " +
#ifdef NDEBUG
"keep.source=FALSE, " +
#else
"keep.source=TRUE, " +
#endif
"encoding='UTF-8')" + localSuffix;
// record that we sourced the file.
recordSourcedFile(filePath, local);
// source the file
return r::exec::executeString(rCode);
}
void GwtCallback::showKeyboardShortcutHelp()
{
FilePath keyboardHelpPath = options().wwwDocsPath().complete("keyboard.htm");
QString file = QString::fromUtf8(keyboardHelpPath.absolutePath().c_str());
QUrl url = QUrl::fromLocalFile(file);
desktop::openUrl(url);
}
Error saveDefaultGlobalEnvironment()
{
// path to save to
FilePath globalEnvPath = rSaveGlobalEnvironmentFilePath();
// notify client of serialization status
SerializationCallbackScope cb(kSerializationActionSaveDefaultWorkspace,
globalEnvPath);
// suppress interrupts which occur during saving
r::exec::IgnoreInterruptsScope ignoreInterrupts;
// save global environment
std::string path = string_utils::utf8ToSystem(globalEnvPath.absolutePath());
Error error = r::exec::executeSafely(
boost::bind(R_SaveGlobalEnvToFile, path.c_str()));
if (error)
{
return error;
}
else
{
return Success();
}
}
Error restoreDefaultGlobalEnvironment()
{
// restore the default global environment if there is one
FilePath globalEnvPath = s_options.startupEnvironmentFilePath;
if (globalEnvPath.exists())
{
// notify client of serialization status
SerializationCallbackScope cb(kSerializationActionLoadDefaultWorkspace,
globalEnvPath);
// ignore interrupts which occur during restoring of the global env
// the restoration will run to completion in any case and then the
// next thing the user does will be "interrupted" -- clearly not
// what they intended
r::exec::IgnoreInterruptsScope ignoreInterrupts;
Error error = r::exec::executeSafely(boost::bind(
R_RestoreGlobalEnvFromFile,
globalEnvPath.absolutePath().c_str(),
TRUE));
if (error)
return error;
// print path to console
std::string aliasedPath = createAliasedPath(globalEnvPath);
Rprintf(("[Workspace loaded from " + aliasedPath + "]\n\n").c_str());
}
// mark image clean (we need to do this due to our delayed handling
// of workspace restoration)
markImageClean();
return Success();
}
Error detectZipFileOverwrites(const FilePath& uploadedZipFile,
const FilePath& destDir,
json::Array* pOverwritesJson)
{
// query for all of the paths in the zip file
std::vector<std::string> zipFileListing;
r::exec::RFunction listZipFile(".rs.listZipFile",
uploadedZipFile.absolutePath());
Error unzipError = listZipFile.call(&zipFileListing);
if (unzipError)
return unzipError;
// check for overwrites
for (std::vector<std::string>::const_iterator
it = zipFileListing.begin();
it != zipFileListing.end();
++it)
{
FilePath filePath = destDir.complete(*it);
if (filePath.exists())
pOverwritesJson->push_back(module_context::createFileSystemItem(filePath));
}
return Success();
}
SEXP rs_pathInfo(SEXP pathSEXP)
{
try
{
// validate
if (r::sexp::length(pathSEXP) != 1)
{
throw r::exec::RErrorException(
"must pass a single file to get path info for");
}
std::string path;
Error error = r::sexp::extract(pathSEXP, &path);
if (error)
throw r::exec::RErrorException(r::endUserErrorMessage(error));
// resolve aliased path
FilePath filePath = module_context::resolveAliasedPath(path);
if (filePath.empty())
throw r::exec::RErrorException("invalid path: " + path);
// create path info vector (use json repsesentation to force convertion
// to VECSXP rather than STRSXP)
json::Object pathInfo;
pathInfo["path"] = filePath.absolutePath();
std::string parent = filePath.absolutePath();
FilePath parentPath = filePath.parent();
if (!parentPath.empty())
parent = parentPath.absolutePath();
pathInfo["directory"] = parent;
pathInfo["name"] = filePath.filename();
pathInfo["stem"] = filePath.stem();
pathInfo["extension"] = filePath.extension();
// return it
r::sexp::Protect rProtect;
return r::sexp::create(pathInfo, &rProtect);
}
catch(r::exec::RErrorException e)
{
r::exec::error(e.message());
}
CATCH_UNEXPECTED_EXCEPTION
return R_NilValue;
}
Error PlotManipulator::save(const FilePath& filePath) const
{
// call manipulator save
r::exec::RFunction manipSave("manipulate:::manipulatorSave");
manipSave.addParam(sexp_.get());
manipSave.addParam(filePath.absolutePath());
return manipSave.call();
}
void UserSettings::setWorkingDirectoryValue(const std::string& key,
const FilePath& filePath)
{
if (module_context::createAliasedPath(filePath) == "~")
settings_.set(key, std::string("~"));
else
settings_.set(key, filePath.absolutePath());
}
bool readPresentation(SlideDeck* pSlideDeck,
std::string* pSlides,
std::string* pInitActions,
std::string* pSlideActions,
std::map<std::string,std::string>* pVars,
std::string* pErrMsg)
{
// look for slides and knit if we need to
FilePath rmdFile = presentation::state::filePath();
std::string ext = rmdFile.extensionLowerCase();
if (rmdFile.exists() && (ext != ".md"))
{
if (!performKnit(rmdFile, pErrMsg))
return false;
}
// look for slides markdown
FilePath slidesFile = rmdFile.parent().childPath(rmdFile.stem() + ".md");
if (!slidesFile.exists())
{
*pErrMsg = slidesFile.absolutePath() + " not found";
return false;
}
// parse the slides
Error error = pSlideDeck->readSlides(slidesFile);
if (error)
{
LOG_ERROR(error);
*pErrMsg = error.summary();
return false;
}
// render the slides
std::string revealConfig;
error = presentation::renderSlides(*pSlideDeck,
pSlides,
&revealConfig,
pInitActions,
pSlideActions);
if (error)
{
LOG_ERROR(error);
*pErrMsg = error.summary();
return false;
}
// build template variables
std::map<std::string,std::string>& vars = *pVars;
vars["title"] = pSlideDeck->title();
vars["slides"] = *pSlides;
vars["slides_css"] = resourceFiles().get("presentation/slides.css");
vars["r_highlight"] = resourceFiles().get("r_highlight.html");
vars["reveal_config"] = revealConfig;
vars["preamble"] = pSlideDeck->preamble();
return true;
}
VCSStatus StatusResult::getStatus(const FilePath& fileOrDirectory) const
{
std::map<std::string, VCSStatus>::const_iterator found =
this->filesByPath_.find(fileOrDirectory.absolutePath());
if (found != this->filesByPath_.end())
return found->second;
return VCSStatus();
}
Error getScriptRunCommand(const json::JsonRpcRequest& request,
json::JsonRpcResponse* pResponse)
{
// params
std::string interpreter, path;
Error error = json::readParams(request.params, &interpreter, &path);
if (error)
return error ;
FilePath filePath = module_context::resolveAliasedPath(path);
// use as minimal a path as possible
FilePath currentPath = module_context::safeCurrentPath();
if (filePath.isWithin(currentPath))
{
path = filePath.relativePath(currentPath);
if (interpreter.empty())
{
#ifndef _WINDOWS
if (path.find_first_of('/') == std::string::npos)
path = "./" + path;
}
#endif
}
else
{
path = filePath.absolutePath();
}
// quote if necessary
if (path.find_first_of(' ') != std::string::npos)
path = "\\\"" + path + "\\\"";
// if there's no interpreter then we may need to do a chmod
#ifndef _WINDOWS
if (interpreter.empty())
{
error = r::exec::RFunction(
"system",
"chmod +x " +
string_utils::utf8ToSystem(path)).call();
if (error)
return error;
}
#endif
// now build and return the command
std::string command;
if (interpreter.empty())
command = path;
else
command = interpreter + " " + path;
command = "system(\"" + command + "\")";
pResponse->setResult(command);
return Success();
}
bool detectLineEndings(const FilePath& filePath, LineEnding* pType)
{
if (!filePath.exists())
return false;
boost::shared_ptr<std::istream> pIfs;
Error error = filePath.open_r(&pIfs);
if (error)
{
LOG_ERROR(error);
return false;
}
// read file character-by-character using a streambuf
try
{
std::istream::sentry se(*pIfs, true);
std::streambuf* sb = pIfs->rdbuf();
while(true)
{
int ch = sb->sbumpc();
if (ch == '\n')
{
// using posix line endings
*pType = string_utils::LineEndingPosix;
return true;
}
else if (ch == '\r' && sb->sgetc() == '\n')
{
// using windows line endings
*pType = string_utils::LineEndingWindows;
return true;
}
else if (ch == EOF)
{
break;
}
else if (pIfs->fail())
{
LOG_WARNING_MESSAGE("I/O Error reading file " +
filePath.absolutePath());
break;
}
}
}
CATCH_UNEXPECTED_EXCEPTION
// no detection possible (perhaps the file is empty or has only one line)
return false;
}
void Options::resolvePandocPath(const FilePath& resourcePath,
std::string* pPath)
{
if (*pPath == kDefaultPandocPath)
{
FilePath path = resourcePath.parent().complete("MacOS/pandoc");
*pPath = path.absolutePath();
}
else
{
resolvePath(resourcePath, pPath);
}
}
// installation path
Error installPath(const std::string& relativeToExecutable,
const char * argv0,
FilePath* pInstallPath)
{
// get executable path
FilePath executablePath;
Error error = system::executablePath(argv0, &executablePath);
if (error)
return error;
// fully resolve installation path relative to executable
FilePath installPath = executablePath.parent().complete(relativeToExecutable);
return realPath(installPath.absolutePath(), pInstallPath);
}
Error PlotManipulator::load(const FilePath& filePath)
{
// call manipulator load
r::exec::RFunction manipLoad("manipulate:::manipulatorLoad");
manipLoad.addParam(filePath.absolutePath());
r::sexp::Protect rProtect;
SEXP manipSEXP;
Error error = manipLoad.call(&manipSEXP, &rProtect);
if (error)
return error;
// set it
sexp_.set(manipSEXP);
return Success();
}
Error FilePath::copy(const FilePath& targetPath) const
{
try
{
boost::filesystem::copy_file(pImpl_->path, targetPath.pImpl_->path) ;
return Success() ;
}
catch(const boost::filesystem::filesystem_error& e)
{
Error error(e.code(), ERROR_LOCATION) ;
addErrorProperties(pImpl_->path, &error) ;
error.addProperty("target-path", targetPath.absolutePath()) ;
return error ;
}
}
void Options::resolvePostbackPath(const FilePath& resourcePath,
std::string* pPath)
{
// On OSX we keep the postback scripts over in the MacOS directory
// rather than in the Resources directory -- make this adjustment
// when the default postback path has been passed
if (*pPath == kDefaultPostbackPath)
{
FilePath path = resourcePath.parent().complete("MacOS/postback/rpostback");
*pPath = path.absolutePath();
}
else
{
resolvePath(resourcePath, pPath);
}
}
void onResume(const Settings& settings)
{
// get the monitored path
std::string monitoredPath = settings.get(kMonitoredPath);
if (!monitoredPath.empty())
{
// resolve aliases
FilePath resolvedPath = FilePath::resolveAliasedPath(
monitoredPath,
module_context::userHomePath());
// start monitoriing
startMonitoring(resolvedPath.absolutePath());
}
quotas::checkQuotaStatus();
}
static boost::shared_ptr<AutoSnapshot> create(
const FilePath& projectDir,
const std::string& targetHash)
{
boost::shared_ptr<AutoSnapshot> pSnapshot(new AutoSnapshot());
std::string snapshotCmd;
Error error = r::exec::RFunction(
".rs.getAutoSnapshotCmd",
projectDir.absolutePath()).call(&snapshotCmd);
if (error)
LOG_ERROR(error); // will also be reported in the console
PACKRAT_TRACE("starting auto snapshot, R command: " << snapshotCmd);
pSnapshot->setTargetHash(targetHash);
pSnapshot->start(snapshotCmd.c_str(), projectDir,
async_r::R_PROCESS_VANILLA);
return pSnapshot;
}
Error extractVariables(const FilePath& file, Variables* pVariables)
{
// return path not found if necessary
if (!file.exists())
return core::pathNotFoundError(file.absolutePath(), ERROR_LOCATION);
// read in the file
std::string contents;
Error error = readStringFromFile(file,
&contents,
string_utils::LineEndingPosix);
if (error)
return error;
extractVariables(contents, pVariables);
return Success();
}
Error PlotManager::savePlotAsSvg(const FilePath& targetPath,
int width,
int height)
{
// calculate size in inches
double widthInches = pixelsToInches(width);
double heightInches = pixelsToInches(height);
// generate code for creating svg device
boost::format fmt("{ require(grDevices, quietly=TRUE); "
" svg(filename=\"%1%\", width=%2%, height=%3%, "
" antialias = \"subpixel\"); }");
std::string deviceCreationCode = boost::str(fmt % string_utils::utf8ToSystem(targetPath.absolutePath()) %
widthInches %
heightInches);
return savePlotAsFile(deviceCreationCode);
}
// IN: String path
// OUT: Array<FileEntry> files
core::Error listFiles(const json::JsonRpcRequest& request,
json::JsonRpcResponse* pResponse)
{
// get path
std::string path;
bool monitor;
Error error = json::readParams(request.params, &path, &monitor);
if (error)
return error ;
// retreive list of files
FilePath targetPath = module_context::resolveAliasedPath(path) ;
std::vector<FilePath> files ;
Error listingError = targetPath.children(&files) ;
if (listingError)
return listingError ;
// sort the files by name
std::sort(files.begin(), files.end(), compareAbsolutePathNoCase);
// produce json listing
json::Array jsonFiles ;
BOOST_FOREACH( FilePath& filePath, files )
{
// files which may have been deleted after the listing or which
// are not end-user visible
if (filePath.exists() && isVisible(filePath))
{
json::Object fileObject = module_context::createFileSystemItem(filePath);
jsonFiles.push_back(fileObject) ;
}
}
// return listing
pResponse->setResult(jsonFiles) ;
// setup monitoring if requested (merely log errors so if something
// unexpected happens the user still gets the file listing)
if (monitor)
startMonitoring(targetPath.absolutePath());
// success
return Success();
}
std::string FilePath::createAliasedPath(const FilePath& path,
const FilePath& userHomePath)
{
// Special case for "~"
if (path == userHomePath)
return kHomePathLeafAlias;
// if the path is contained within the home path then alias it
std::string homeRelativePath = path.relativePath(userHomePath);
if (!homeRelativePath.empty())
{
std::string aliasedPath = kHomePathAlias + homeRelativePath;
return aliasedPath;
}
else // no aliasing
{
return path.absolutePath();
}
}