bool Solver_LP_abstract::readLpFromFile(const std::string& filename,
VectorX &c, VectorX &lb, VectorX &ub,
MatrixXX &A, VectorX &Alb, VectorX &Aub)
{
std::ifstream in(filename.c_str(), std::ios::in | std::ios::binary);
typename MatrixXX::Index n=0, m=0;
in.read((char*) (&n),sizeof(typename MatrixXX::Index));
in.read((char*) (&m),sizeof(typename MatrixXX::Index));
c.resize(n);
lb.resize(n);
ub.resize(n);
A.resize(m,n);
Alb.resize(m);
Aub.resize(m);
in.read( (char *) c.data() , n*sizeof(typename MatrixXX::Scalar) );
in.read( (char *) lb.data() , n*sizeof(typename MatrixXX::Scalar) );
in.read( (char *) ub.data() , n*sizeof(typename MatrixXX::Scalar) );
in.read( (char *) A.data() , m*n*sizeof(typename MatrixXX::Scalar) );
in.read( (char *) Alb.data() , m*sizeof(typename MatrixXX::Scalar) );
in.read( (char *) Aub.data() , m*sizeof(typename MatrixXX::Scalar) );
in.close();
return true;
}
void TrajectoryClassifier::derive_rotation_by_svd(VecX& rot,const MatrixX3 &X, MatrixX3& Y,MatrixXXi& vtx_map)
{
MatrixXX temp = Y;
int verN = temp.rows();
for (int i = 0; i < verN; i++)
{
Y.row(i) = temp.row(vtx_map(0,i));
}
Matrix33 sigma = (X.rowwise() - X.colwise().mean()).transpose() * (Y.rowwise() - Y.colwise().mean());
Matrix33 rot_mat;
Eigen::JacobiSVD<Matrix33> svd(sigma, Eigen::ComputeFullU | Eigen::ComputeFullV);
if(svd.matrixU().determinant()*svd.matrixV().determinant() < 0.0) {
Vec3 S = Vec3::Ones(); S(2) = -1.0;
rot_mat = svd.matrixV()*S.asDiagonal()*svd.matrixU().transpose();
} else {
rot_mat = svd.matrixV()*svd.matrixU().transpose();
}
rot.block<3,1>(0,0) << rot_mat.row(0).transpose();
rot.block<3,1>(3,0) << rot_mat.row(1).transpose();
rot.block<3,1>(6,0) << rot_mat.row(2).transpose();
}
void cxy_icp_kinematic_chain<_Scalar>::getJacobian(MatrixXX& jacobian)
{
long rows = cxy_config::n_num_*getModelPointSize();
long cols = cxy_config::joint_DoFs;
if (rows != jacobian.rows()
|| cols != jacobian.cols())
{
jacobian.resize(rows, cols);
}
jacobian.setZero();
int row = 0;
for (int ii = 0; ii < points_.size(); ++ii)
{
row = ii*config_->n_num_;
//jacobian.row(1);
points_[ii]->computePointJacobian(jacobian.block(row, 0, cxy_config::n_num_, jacobian.cols()));
}
fout_res_<<"x = "<<std::endl;
fout_res_<<Rad2Deg(x_)<<std::endl;
fout_res_<<"jac = "<<std::endl;
fout_res_<<jacobian<<std::endl;
}
Eigen::Matrix<Float, Eigen::Dynamic, Eigen::Dynamic>
Prima(Eigen::SparseMatrix<Float> const& C, // derivative conductance terms
Eigen::SparseMatrix<Float> const& G, // conductance
Eigen::SparseMatrix<Float> const& B, // input
Eigen::SparseMatrix<Float> const& L, // output
std::size_t q) { // desired state variables
// assert preconditions
assert(C.rows() == C.cols()); // input matrices are square
assert(G.rows() == G.cols());
assert(C.rows() == G.rows()); // input matrices are of the same size
assert(B.rows() == G.rows());
assert(L.rows() == G.rows());
std::size_t N = B.cols();
std::size_t state_count = static_cast<std::size_t>(C.rows());
assert(N < state_count); // must have more state variables than ports
assert(q < state_count); // desired state count must be less than current number
// unchecked precondition: the state variables associated with the ports must be the last N
using namespace Eigen;
using namespace std;
// Step 1 of PRIMA creates the B and L matrices, and is performed by the caller.
// Step 2: Solve GR = B for R
SparseLU<SparseMatrix<Float>, COLAMDOrdering<int> > G_LU(G);
assert(G_LU.info() == Success);
SparseMatrix<Float> R = G_LU.solve(B);
// Step 3: Set X[0] to the orthonormal basis of R as determined by QR factorization
typedef Matrix<Float, Dynamic, Dynamic> MatrixXX;
// The various X matrices are stored in a std::vector. Eigen requires us to use a special
// allocator to retain alignment:
typedef aligned_allocator<MatrixXX> AllocatorXX;
typedef vector<MatrixXX, AllocatorXX> MatrixXXList;
SparseQR<SparseMatrix<Float>, COLAMDOrdering<int> > R_QR(R);
assert(R_QR.info() == Success);
// QR stores the Q "matrix" as a series of Householder reflection operations
// that it will perform for you with the * operator. If you store it in a matrix
// it obligingly produces an NxN matrix but if you want the "thin" result only,
// creating a thin identity matrix and then applying the reflections saves both
// memory and time:
MatrixXXList X(1, R_QR.matrixQ() * MatrixXX::Identity(B.rows(), R_QR.rank()));
// Step 4: Set n = floor(q/N)+1 if q/N is not an integer, and q/N otherwise
size_t n = (q % N) ? (q/N + 1) : (q/N);
// Step 5: Block Arnoldi (see Boley for detailed explanation)
// In some texts this is called "band Arnoldi".
// Boley and PRIMA paper use X with both subscripts and superscripts
// to indicate the outer (subscript) and inner (superscript) loops
// I have used X[] for the outer, Xk for the inner
// X[k][j] value is just the value for the current inner loop, updated from the previous
// so a single Xkj will suffice
for (size_t k = 1; k < n; ++k)
{
// because X[] will vary in number of columns, so will Xk[]
MatrixXX Xkj; // X[k][j] - vector in PRIMA paper but values not reused
// Prima paper says:
// set V = C * X[k-1]
// solve G*X[k][0] = V for X[k][0]
Xkj = G_LU.solve(C*X[k-1]); // Boley: "expand Krylov space"
for (size_t j = 1; j <= k; ++j) // "Modified Gram-Schmidt"
{
auto H = X[k-j].transpose() * Xkj; // H[k-j][k-1] per Boley
// X[k][j] = X[k][j-1] - X[k-j]*H
Xkj = Xkj - X[k-j] * H; // update X[k][j] from X[k][j-1]
}
// set X[k] to the orthonormal basis of X[k][k] via QR factorization
// per Boley the "R" produced is H[k][k-1]
if (Xkj.cols() == 1)
{
// a single column is automatically orthogonalized; just normalize
X.push_back(Xkj.normalized());
} else {
auto xkkQR = Xkj.fullPivHouseholderQr();
X.push_back(xkkQR.matrixQ() * MatrixXX::Identity(Xkj.rows(), xkkQR.rank()));
}
}
// Step 6: Set Xfinal to the concatenation of X[0] to X[n-1],
// truncated to q columns
size_t cols = accumulate(X.begin(), X.end(), 0,
[](size_t sum, MatrixXX const& m) { return sum + m.cols(); });
cols = std::min(q, cols); // truncate to q
MatrixXX Xfinal(state_count, cols);
size_t col = 0;
for (size_t k = 0; (k <= n) && (col < cols); ++k)
{
// copy columns from X[k] to Xfinal
for (int j = 0; (j < X[k].cols()) && (col < cols); ++j)
{
Xfinal.col(col++) = X[k].col(j);
}
}
return Xfinal;
}