void readFields
(
const vtkMesh& vMesh,
const typename GeoField::Mesh& mesh,
const IOobjectList& objects,
const HashSet<word>& selectedFields,
PtrList<GeoField>& fields
)
{
// Search list of objects for volScalarFields
IOobjectList fieldObjects(objects.lookupClass(GeoField::typeName));
// Construct the vol scalar fields
label nFields = fields.size();
fields.setSize(nFields + fieldObjects.size());
for
(
IOobjectList::iterator iter = fieldObjects.begin();
iter != fieldObjects.end();
++iter
)
{
if (selectedFields.empty() || selectedFields.found(iter()->name()))
{
fields.set
(
nFields,
vMesh.interpolate
(
GeoField
(
*iter(),
mesh
)
)
);
nFields++;
}
}
fields.setSize(nFields);
}
void Foam::readFields
(
const Mesh& mesh,
const IOobjectList& objects,
PtrList<GeoField>& fields
)
{
// Search list of objects for volScalarFields
IOobjectList fieldObjects(objects.lookupClass(GeoField::typeName));
// Remove the cellDist field
IOobjectList::iterator celDistIter = fieldObjects.find("cellDist");
if (celDistIter != fieldObjects.end())
{
fieldObjects.erase(celDistIter);
}
// Construct the vol scalar fields
fields.setSize(fieldObjects.size());
label fieldi=0;
for
(
IOobjectList::iterator iter = fieldObjects.begin();
iter != fieldObjects.end();
++iter
)
{
fields.set
(
fieldi++,
new GeoField
(
*iter(),
mesh
)
);
}
}
void Foam::preservePatchTypes
(
const objectRegistry& obr,
const word& meshInstance,
const fileName& meshDir,
const wordList& patchNames,
PtrList<dictionary>& patchDicts,
const word& defaultFacesName,
word& defaultFacesType
)
{
patchDicts.setSize(patchNames.size());
dictionary patchDictionary;
// Read boundary file as single dictionary
{
IOobject patchEntriesHeader
(
"boundary",
meshInstance,
meshDir,
obr,
IOobject::MUST_READ,
IOobject::NO_WRITE,
false
);
if (patchEntriesHeader.typeHeaderOk<polyBoundaryMesh>(true))
{
// Create a list of entries from the boundary file.
polyBoundaryMeshEntries patchEntries(patchEntriesHeader);
forAll(patchEntries, patchi)
{
patchDictionary.add(patchEntries[patchi]);
}
}
void coupledInfo<MeshType>::setField
(
const wordList& fieldNames,
const dictionary& fieldDicts,
const label internalSize,
PtrList<GeomField>& fields
) const
{
typedef typename GeomField::InternalField InternalField;
typedef typename GeomField::PatchFieldType PatchFieldType;
typedef typename GeomField::GeometricBoundaryField GeomBdyFieldType;
typedef typename GeomField::DimensionedInternalField DimInternalField;
// Size up the pointer list
fields.setSize(fieldNames.size());
// Define patch type names, assumed to be
// common for volume and surface fields
word emptyType(emptyPolyPatch::typeName);
word processorType(processorPolyPatch::typeName);
forAll(fieldNames, i)
{
// Create and map the patch field values
label nPatches = subMesh().boundary().size();
// Create field parts
PtrList<PatchFieldType> patchFields(nPatches);
// Read dimensions
dimensionSet dimSet
(
fieldDicts.subDict(fieldNames[i]).lookup("dimensions")
);
// Read the internal field
InternalField internalField
(
"internalField",
fieldDicts.subDict(fieldNames[i]),
internalSize
);
// Create dummy types for initial field creation
forAll(patchFields, patchI)
{
if (patchI == (nPatches - 1))
{
// Artificially set last patch
patchFields.set
(
patchI,
PatchFieldType::New
(
emptyType,
subMesh().boundary()[patchI],
DimInternalField::null()
)
);
}
else
{
patchFields.set
(
patchI,
PatchFieldType::New
(
PatchFieldType::calculatedType(),
subMesh().boundary()[patchI],
DimInternalField::null()
)
);
}
}
// Create field with dummy patches
fields.set
(
i,
new GeomField
(
IOobject
(
fieldNames[i],
subMesh().time().timeName(),
subMesh(),
IOobject::NO_READ,
IOobject::NO_WRITE,
false
),
subMesh(),
dimSet,
internalField,
patchFields
)
);
// Set correct references for patch internal fields,
// and fetch values from the supplied geometric field dictionaries
GeomBdyFieldType& bf = fields[i].boundaryField();
forAll(bf, patchI)
{
if (patchI == (nPatches - 1))
{
// Artificially set last patch
bf.set
(
patchI,
PatchFieldType::New
(
emptyType,
subMesh().boundary()[patchI],
fields[i].dimensionedInternalField()
)
);
}
else
if (isA<processorPolyPatch>(subMesh().boundary()[patchI].patch()))
{
bf.set
(
patchI,
PatchFieldType::New
(
processorType,
subMesh().boundary()[patchI],
fields[i].dimensionedInternalField()
)
);
}
else
{
bf.set
(
patchI,
PatchFieldType::New
(
subMesh().boundary()[patchI],
fields[i].dimensionedInternalField(),
fieldDicts.subDict
(
fieldNames[i]
).subDict("boundaryField").subDict
(
subMesh().boundary()[patchI].name()
)
)
);
}
}
}
void ReadAndMapFields
(
const fvMesh& mesh,
const IOobjectList& objects,
const fvMesh& tetDualMesh,
const labelList& map,
const typename MappedGeoField::value_type& nullValue,
PtrList<MappedGeoField>& tetFields
)
{
typedef typename MappedGeoField::value_type Type;
// Search list of objects for wanted type
IOobjectList fieldObjects(objects.lookupClass(ReadGeoField::typeName));
tetFields.setSize(fieldObjects.size());
label i = 0;
forAllConstIter(IOobjectList, fieldObjects, iter)
{
Info<< "Converting " << ReadGeoField::typeName << ' ' << iter.key()
<< endl;
ReadGeoField readField(*iter(), mesh);
tetFields.set
(
i,
new MappedGeoField
(
IOobject
(
readField.name(),
readField.instance(),
readField.local(),
tetDualMesh,
IOobject::NO_READ,
IOobject::AUTO_WRITE,
readField.registerObject()
),
pointMesh::New(tetDualMesh),
dimensioned<Type>
(
"zero",
readField.dimensions(),
pTraits<Type>::zero
)
)
);
Field<Type>& fld = tetFields[i].internalField();
// Map from read field. Set unmapped entries to nullValue.
fld.setSize(map.size(), nullValue);
forAll(map, pointI)
{
label index = map[pointI];
if (index > 0)
{
label cellI = index-1;
fld[pointI] = readField[cellI];
}
else if (index < 0)
{
label faceI = -index-1;
label bFaceI = faceI - mesh.nInternalFaces();
if (bFaceI >= 0)
{
label patchI = mesh.boundaryMesh().patchID()[bFaceI];
label localFaceI = mesh.boundaryMesh()[patchI].whichFace
(
faceI
);
fld[pointI] = readField.boundaryField()[patchI][localFaceI];
}
//else
//{
// FatalErrorIn("ReadAndMapFields(..)")
// << "Face " << faceI << " from index " << index
// << " is not a boundary face." << abort(FatalError);
//}
}
//else
//{
// WarningIn("ReadAndMapFields(..)")
// << "Point " << pointI << " at "
// << tetDualMesh.points()[pointI]
// << " has no dual correspondence." << endl;
//}
}
void Foam::readFields::loadField
(
const word& fieldName,
PtrList<GeometricField<Type, fvPatchField, volMesh> >& vflds,
PtrList<GeometricField<Type, fvsPatchField, surfaceMesh> >& sflds
) const
{
typedef GeometricField<Type, fvPatchField, volMesh> vfType;
typedef GeometricField<Type, fvsPatchField, surfaceMesh> sfType;
if (obr_.foundObject<vfType>(fieldName))
{
if (debug)
{
Info<< "readFields : Field " << fieldName << " already in database"
<< endl;
}
}
else if (obr_.foundObject<sfType>(fieldName))
{
if (debug)
{
Info<< "readFields : Field " << fieldName << " already in database"
<< endl;
}
}
else
{
const fvMesh& mesh = refCast<const fvMesh>(obr_);
IOobject fieldHeader
(
fieldName,
mesh.time().timeName(),
mesh,
IOobject::MUST_READ,
IOobject::NO_WRITE
);
if
(
fieldHeader.headerOk()
&& fieldHeader.headerClassName() == vfType::typeName
)
{
// store field locally
Info<< " Reading " << fieldName << endl;
label sz = vflds.size();
vflds.setSize(sz+1);
vflds.set(sz, new vfType(fieldHeader, mesh));
}
else if
(
fieldHeader.headerOk()
&& fieldHeader.headerClassName() == sfType::typeName
)
{
// store field locally
Info<< " Reading " << fieldName << endl;
label sz = sflds.size();
sflds.setSize(sz+1);
sflds.set(sz, new sfType(fieldHeader, mesh));
}
}
}
void Foam::nearWallFields::createFields
(
PtrList<GeometricField<Type, fvPatchField, volMesh> >& sflds
) const
{
typedef GeometricField<Type, fvPatchField, volMesh> vfType;
HashTable<const vfType*> flds(obr_.lookupClass<vfType>());
forAllConstIter(typename HashTable<const vfType*>, flds, iter)
{
const vfType& fld = *iter();
if (fieldMap_.found(fld.name()))
{
const word& sampleFldName = fieldMap_[fld.name()];
if (obr_.found(sampleFldName))
{
Info<< " a field " << sampleFldName
<< " already exists on the mesh."
<< endl;
}
else
{
label sz = sflds.size();
sflds.setSize(sz+1);
IOobject io(fld);
io.readOpt() = IOobject::NO_READ;
io.rename(sampleFldName);
sflds.set(sz, new vfType(io, fld));
vfType& sampleFld = sflds[sz];
// Reset the bcs to be directMapped
forAllConstIter(labelHashSet, patchSet_, iter)
{
label patchI = iter.key();
sampleFld.boundaryField().set
(
patchI,
new selfContainedDirectMappedFixedValueFvPatchField
<Type>
(
sampleFld.mesh().boundary()[patchI],
sampleFld.dimensionedInternalField(),
sampleFld.mesh().name(),
directMappedPatchBase::NEARESTCELL,
word::null, // samplePatch
-distance_,
sampleFld.name(), // fieldName
false, // setAverage
pTraits<Type>::zero, // average
interpolationCellPoint<Type>::typeName
)
);
}
Info<< " created " << sampleFld.name() << " to sample "
<< fld.name() << endl;
}
}
}
Foam::searchableSurfaceControl::searchableSurfaceControl
(
const Time& runTime,
const word& name,
const dictionary& controlFunctionDict,
const conformationSurfaces& geometryToConformTo,
const scalar& defaultCellSize
)
:
cellSizeAndAlignmentControl
(
runTime,
name,
controlFunctionDict,
geometryToConformTo,
defaultCellSize
),
surfaceName_(controlFunctionDict.lookupOrDefault<word>("surface", name)),
searchableSurface_(geometryToConformTo.geometry()[surfaceName_]),
geometryToConformTo_(geometryToConformTo),
cellSizeFunctions_(1),
regionToCellSizeFunctions_(searchableSurface_.regions().size(), -1),
maxPriority_(-1)
{
Info<< indent << "Master settings:" << endl;
Info<< incrIndent;
cellSizeFunctions_.set
(
0,
cellSizeFunction::New
(
controlFunctionDict,
searchableSurface_,
defaultCellSize_,
labelList()
)
);
Info<< decrIndent;
PtrList<cellSizeFunction> regionCellSizeFunctions;
DynamicList<label> defaultCellSizeRegions;
label nRegionCellSizeFunctions = 0;
// Loop over regions - if any entry is not specified they should
// inherit values from the parent surface.
if (controlFunctionDict.found("regions"))
{
const dictionary& regionsDict = controlFunctionDict.subDict("regions");
const wordList& regionNames = searchableSurface_.regions();
label nRegions = regionsDict.size();
regionCellSizeFunctions.setSize(nRegions);
defaultCellSizeRegions.setCapacity(nRegions);
forAll(regionNames, regionI)
{
const word& regionName = regionNames[regionI];
label regionID = geometryToConformTo_.geometry().findSurfaceRegionID
(
this->name(),
regionName
);
if (regionsDict.found(regionName))
{
// Get the dictionary for region
const dictionary& regionDict = regionsDict.subDict(regionName);
Info<< indent << "Region " << regionName
<< " (ID = " << regionID << ")" << " settings:"
<< endl;
Info<< incrIndent;
regionCellSizeFunctions.set
(
nRegionCellSizeFunctions,
cellSizeFunction::New
(
regionDict,
searchableSurface_,
defaultCellSize_,
labelList(1, regionID)
)
);
Info<< decrIndent;
regionToCellSizeFunctions_[regionID] = nRegionCellSizeFunctions;
nRegionCellSizeFunctions++;
}
else
{
// Add to default list
defaultCellSizeRegions.append(regionID);
}
}
}
if (defaultCellSizeRegions.empty() && !regionCellSizeFunctions.empty())
{
cellSizeFunctions_.transfer(regionCellSizeFunctions);
}
else if (nRegionCellSizeFunctions > 0)
{
regionCellSizeFunctions.setSize(nRegionCellSizeFunctions + 1);
regionCellSizeFunctions.set
(
nRegionCellSizeFunctions,
cellSizeFunction::New
(
controlFunctionDict,
searchableSurface_,
defaultCellSize_,
labelList()
)
);
const wordList& regionNames = searchableSurface_.regions();
forAll(regionNames, regionI)
{
if (regionToCellSizeFunctions_[regionI] == -1)
{
regionToCellSizeFunctions_[regionI] = nRegionCellSizeFunctions;
}
}
cellSizeFunctions_.transfer(regionCellSizeFunctions);
}
void topoMapper::storeGradients
(
GradientTable& gradTable,
PtrList<gradType>& gradList
) const
{
// Define a few typedefs for convenience
typedef GeometricField<Type, fvPatchField, volMesh> volType;
typedef const GeometricField<Type, fvPatchField, volMesh> constVolType;
typedef HashTable<constVolType*> volTypeTable;
// Fetch all fields from registry
volTypeTable fields(mesh_.objectRegistry::lookupClass<volType>());
// Track field count
label nFields = 0;
// Store old-times before gradient computation
for
(
typename volTypeTable::iterator fIter = fields.begin();
fIter != fields.end();
++fIter
)
{
fIter()->storeOldTimes();
nFields++;
}
// Size up the list
gradList.setSize(nFields);
label fieldIndex = 0;
for
(
typename volTypeTable::const_iterator fIter = fields.begin();
fIter != fields.end();
++fIter
)
{
const volType& field = *fIter();
// Compute the gradient.
// If the fvSolution dictionary contains an entry,
// use that, otherwise, default to leastSquares
word gradName("grad(" + field.name() + ')');
// Register field under a name that's unique
word registerName("remapGradient(" + field.name() + ')');
// Make a new entry
if (mesh_.schemesDict().subDict("gradSchemes").found(gradName))
{
gradList.set
(
fieldIndex,
new gradType
(
IOobject
(
registerName,
mesh_.time().timeName(),
mesh_,
IOobject::NO_READ,
IOobject::NO_WRITE,
true
),
fvc::grad(field, gradName)()
)
);
}
else
{
gradList.set
(
fieldIndex,
new gradType
(
IOobject
(
registerName,
mesh_.time().timeName(),
mesh_,
IOobject::NO_READ,
IOobject::NO_WRITE,
true
),
fv::leastSquaresGrad<Type>(mesh_).grad(field)()
)
);
}
// Add a map entry
gradTable.insert
(
field.name(),
GradientMap(registerName, fieldIndex++)
);
}
}
void Foam::GAMGSolver::initVcycle
(
PtrList<scalargpuField>& coarseCorrFields,
PtrList<scalargpuField>& coarseSources,
PtrList<lduMatrix::smoother>& smoothers,
scalargpuField& scratch1,
scalargpuField& scratch2
) const
{
label maxSize = matrix_.diag().size();
coarseCorrFields.setSize(matrixLevels_.size());
coarseSources.setSize(matrixLevels_.size());
smoothers.setSize(matrixLevels_.size() + 1);
// Create the smoother for the finest level
smoothers.set
(
0,
lduMatrix::smoother::New
(
fieldName_,
matrix_,
interfaceBouCoeffs_,
interfaceIntCoeffs_,
interfaces_,
controlDict_
)
);
forAll(matrixLevels_, leveli)
{
if (agglomeration_.nCells(leveli) >= 0)
{
label nCoarseCells = agglomeration_.nCells(leveli);
coarseSources.set(leveli,GAMGSolverCache::source(leveli,nCoarseCells));
//coarseSources.set(leveli, new scalargpuField(nCoarseCells));
}
if (matrixLevels_.set(leveli))
{
const lduMatrix& mat = matrixLevels_[leveli];
label nCoarseCells = mat.diag().size();
maxSize = max(maxSize, nCoarseCells);
//coarseCorrFields.set(leveli, new scalargpuField(nCoarseCells));
coarseCorrFields.set(leveli,GAMGSolverCache::corr(leveli,nCoarseCells));
smoothers.set
(
leveli + 1,
lduMatrix::smoother::New
(
fieldName_,
matrixLevels_[leveli],
interfaceLevelsBouCoeffs_[leveli],
interfaceLevelsIntCoeffs_[leveli],
interfaceLevels_[leveli],
controlDict_
)
);
}
}
if (maxSize > matrix_.diag().size())
{
// Allocate some scratch storage
scratch1.setSize(maxSize);
scratch2.setSize(maxSize);
}
}
void Foam::equationReader::removePowExponents
(
const label index,
tokenList& tl,
PtrList<equationOperation>& map,
labelList& opLvl,
labelList& pl
) const
{
// Remove pow(a,b) exponent part 'b' from an equation and create a sub-
// equation.
label tokenI(0);
while (tokenI < map.size())
{
if (map[tokenI].operation() == equationOperation::otpow)
{
// Found a 'pow('. Look for ','; fail on ')', or end of list
// pl checks ensure the ',' or ')' relate to the 'pow(', and not
// another function / parethesis
const label powFoundAt(tokenI);
const label pLvl(pl[tokenI]);
while ((opLvl[tokenI] != 5) || (pl[tokenI] != pLvl))
{
if
(
((opLvl[tokenI] == -4) && (pl[tokenI] == pLvl))
|| (tokenI == (map.size() - 1))
)
{
OStringStream description;
description << "pow() function takes two arguments.";
fatalParseError
(
index,
tl,
powFoundAt,
tokenI,
"equationReader::removePowExponents",
description
);
}
tokenI++;
}
// Found 'pow( ... ,' look for ')', fail on list end
const label commaFoundAt(tokenI);
while ((opLvl[tokenI] != -4) || (pl[tokenI] != pLvl))
{
if (tokenI == (map.size() - 1))
{
OStringStream description;
description << "Can't find closing parenthesis for "
<< "pow() function.";
fatalParseError
(
index,
tl,
powFoundAt,
tokenI,
"equationReader::removePowExponents",
description
);
}
tokenI++;
}
const label closeFoundAt(tokenI);
// Ignore if the exponent is only 1 token
if ((closeFoundAt - commaFoundAt) > 2)
{
// Now create sub-equation
OStringStream subEqnStream;
for
(
label subTokenI(commaFoundAt + 1);
subTokenI < closeFoundAt;
subTokenI++
)
{
if
(
tl[subTokenI].isPunctuation()
&& (tl[subTokenI].pToken() == token::COLON))
{
subEqnStream << "^";
}
else
{
subEqnStream << tl[subTokenI];
}
}
string subEqnRawText(subEqnStream.str());
const equation& eqn(operator[](index));
equation subEqn
(
eqn.name() + "_powExponent_" + name(powFoundAt),
subEqnRawText,
eqn.overrideDimensions(),
eqn.changeDimensions()
);
bool eqnCreated(false);
for (label eqnI(0); eqnI < size(); eqnI++)
{
const equation& eqnTest(operator[](eqnI));
if (eqnTest.name() == subEqn.name())
{
clearEquation(eqnI);
eqnTest.setRawText(subEqn.rawText());
eqnTest.setOverrideDimensions
(
subEqn.overrideDimensions()
);
eqnTest.setChangeDimensions
(
eqnTest.changeDimensions()
);
eqnCreated = true;
}
}
if (!eqnCreated)
{
createEquation(subEqn);
}
// Change commaFoundAt + 1 entry to reflect new subEquation
// reference
tl[commaFoundAt + 1] = token(subEqn.name());
map.set
(
commaFoundAt + 1,
new equationOperation(findSource(subEqn.name()))
);
opLvl[commaFoundAt + 1] = 0;
pl[commaFoundAt + 1] = pl[commaFoundAt];
// Remove the subEquation from tl, map, opLvl and pl
label tokensRemoved(closeFoundAt - (commaFoundAt + 2));
label newSize(map.size() - tokensRemoved);
for
(
label subTokenI(commaFoundAt + 2);
subTokenI < newSize;
subTokenI++
)
{
tl[subTokenI] = tl[subTokenI + tokensRemoved];
map[subTokenI] = map[subTokenI + tokensRemoved];
opLvl[subTokenI] = opLvl[subTokenI + tokensRemoved];
pl[subTokenI] = pl[subTokenI + tokensRemoved];
}
tl.setSize(newSize);
map.setSize(newSize);
opLvl.setSize(newSize);
pl.setSize(newSize);
}
}
tokenI++;
}
}