struct raToStructReader *edwFastqFileRaReader()
/* Make a raToStructReader for edwFastqFile */
{
static char *fields[] = {
"sampleCount",
"basesInSample",
"readCount",
"baseCount",
"readSizeMean",
"readSizeStd",
"readSizeMin",
"readSizeMax",
"qualMean",
"qualStd",
"qualMin",
"qualMax",
"qualType",
"qualZero",
"atRatio",
"aRatio",
"cRatio",
"gRatio",
"tRatio",
"nRatio",
"qualPos",
"aAtPos",
"cAtPos",
"gAtPos",
"tAtPos",
"nAtPos",
};
static char *requiredFields[] = {
"readCount",
"baseCount",
"readSizeMean",
"readSizeStd",
"readSizeMin",
"readSizeMax",
"qualMean",
"qualStd",
"qualMin",
"qualMax",
"qualType",
"qualZero",
"atRatio",
"aRatio",
"cRatio",
"gRatio",
"tRatio",
"nRatio",
"qualPos",
"aAtPos",
"cAtPos",
"gAtPos",
"tAtPos",
"nAtPos",
};
return raToStructReaderNew("edwFastqFile", ArraySize(fields), fields, ArraySize(requiredFields), requiredFields);
}
struct raToStructReader *cdwQaPairedEndFastqRaReader()
/* Make a raToStructReader for cdwQaPairedEndFastq */
{
static char *fields[] = {
"fileId1",
"concordance",
"distanceMean",
"distanceStd",
"distanceMin",
"distanceMax",
};
static char *requiredFields[] = {
"concordance",
"distanceMean",
"distanceStd",
"distanceMin",
"distanceMax",
};
return raToStructReaderNew("cdwQaPairedEndFastq", ArraySize(fields), fields, ArraySize(requiredFields), requiredFields);
}
struct raToStructReader *edwQaWigSpotRaReader()
/* Make a raToStructReader for edwQaWigSpot */
{
static char *fields[] = {
"spotRatio",
"enrichment",
"basesInGenome",
"basesInSpots",
"sumSignal",
"spotSumSignal",
};
static char *requiredFields[] = {
"spotRatio",
"enrichment",
"basesInGenome",
"basesInSpots",
"sumSignal",
"spotSumSignal",
};
return raToStructReaderNew("edwQaWigSpot", ArraySize(fields), fields, ArraySize(requiredFields), requiredFields);
}
struct raToStructReader *cdwBamFileRaReader()
/* Make a raToStructReader for cdwBamFile */
{
static char *fields[] = {
"isPaired",
"isSortedByTarget",
"readCount",
"readBaseCount",
"mappedCount",
"uniqueMappedCount",
"readSizeMean",
"readSizeStd",
"readSizeMin",
"readSizeMax",
"u4mReadCount",
"u4mUniquePos",
"u4mUniqueRatio",
"targetBaseCount",
"targetSeqCount",
};
static char *requiredFields[] = {
"isPaired",
"isSortedByTarget",
"readCount",
"readBaseCount",
"mappedCount",
"uniqueMappedCount",
"readSizeMean",
"readSizeStd",
"readSizeMin",
"readSizeMax",
"u4mReadCount",
"u4mUniquePos",
"u4mUniqueRatio",
"targetBaseCount",
"targetSeqCount",
};
return raToStructReaderNew("cdwBamFile", ArraySize(fields), fields, ArraySize(requiredFields), requiredFields);
}
