Ejemplo n.º 1
0
void set_vcf_record_chromosome(char* chromosome, int length, vcf_record_t* record) {
    assert(chromosome);
    assert(record);
    
    if (starts_with_n(chromosome, "chrom", 5)) {
        record->chromosome = chromosome + 5;
        record->chromosome_len = length - 5;
    } else if (starts_with_n(chromosome, "chr", 3)) {
        record->chromosome = chromosome + 3;
        record->chromosome_len = length - 3;
    } else {
        record->chromosome = chromosome;
        record->chromosome_len = length;
    }
//     LOG_DEBUG_F("set chromosome: '%.*s'\n", record->chromosome_len, record->chromosome);
}
Ejemplo n.º 2
0
/*!
 * \brief Check if string has prefix
 *        (case sensitive)
 *
 * \param string String
 * \param prefix Prefix
 *
 * \return Whether the string starts with the prefix
 */
bool starts_with(const std::string &string, const std::string &prefix)
{
    return starts_with_n(string.c_str(), string.size(),
                         prefix.c_str(), prefix.size());
}
Ejemplo n.º 3
0
/*!
 * \brief Check if string has prefix
 *        (case sensitive)
 *
 * \param string String
 * \param prefix Prefix
 *
 * \return Whether the string starts with the prefix
 */
bool starts_with(const std::string &string, const char *prefix)
{
    return starts_with_n(string.c_str(), string.size(), prefix, strlen(prefix));
}
Ejemplo n.º 4
0
/*!
 * \brief Check if string has prefix
 *        (case sensitive)
 *
 * \param string String
 * \param prefix Prefix
 *
 * \return Whether the string starts with the prefix
 */
bool starts_with(const char *string, const std::string &prefix)
{
    return starts_with_n(string, strlen(string), prefix.c_str(), prefix.size());
}
Ejemplo n.º 5
0
/*!
 * \brief Check if string has prefix
 *        (case sensitive)
 *
 * \param string String
 * \param prefix Prefix
 *
 * \return Whether the string starts with the prefix
 */
bool starts_with(const char *string, const char *prefix)
{
    return starts_with_n(string, strlen(string), prefix, strlen(prefix));
}