int main () {
Isis::Preference::Preferences(true);
try {
PvlGroup alg("Algorithm");
alg += PvlKeyword("Name","MinimumDifference");
alg += PvlKeyword("Tolerance",5.0);
alg += PvlKeyword("SubpixelAccuracy", "True");
PvlGroup pchip("PatternChip");
pchip += PvlKeyword("Samples",15);
pchip += PvlKeyword("Lines",15);
pchip += PvlKeyword("Sampling",25);
pchip += PvlKeyword("ValidPercent", 10);
PvlGroup schip("SearchChip");
schip += PvlKeyword("Samples",35);
schip += PvlKeyword("Lines",35);
schip += PvlKeyword("Sampling", 50);
PvlObject o("AutoRegistration");
o.AddGroup(alg);
o.AddGroup(pchip);
o.AddGroup(schip);
Pvl pvl;
pvl.AddObject(o);
std::cout << pvl << std::endl;
AutoReg *ar = AutoRegFactory::Create(pvl);
Cube c;
c.Open("$mgs/testData/ab102401.cub");
ar->SearchChip()->TackCube(125.0,50.0);
ar->SearchChip()->Load(c);
ar->PatternChip()->TackCube(120.0,45.0);
ar->PatternChip()->Load(c);
std::cout << "Register = " << ar->Register() << std::endl;
std::cout << "Position = " << ar->CubeSample() << " " <<
ar->CubeLine() << std::endl;
}
catch (iException &e) {
e.Report();
}
return 0;
}
void IsisMain() {
// Get user interface
UserInterface &ui = Application::GetUserInterface();
bool register_ignored = ui.GetBoolean("REGISTERIGNOREDONLY");
// Open the files list in a SerialNumberList for
// reference by SerialNumber
SerialNumberList files(ui.GetFilename("FILES"));
// Create a ControlNet from the input file
ControlNet inNet(ui.GetFilename("CNET"));
// Create an AutoReg from the template file
Pvl pvl(ui.GetFilename("TEMPLATE"));
AutoReg *ar = AutoRegFactory::Create(pvl);
// Create the output ControlNet
ControlNet outNet;
outNet.SetType(inNet.Type());
outNet.SetUserName(Application::UserName());
outNet.SetDescription(inNet.Description());
outNet.SetCreatedDate(iTime::CurrentLocalTime());
outNet.SetTarget(inNet.Target());
outNet.SetNetworkId(inNet.NetworkId());
Progress progress;
progress.SetMaximumSteps(inNet.Size());
progress.CheckStatus();
int ignored=0, unmeasured=0, registered=0, unregistered=0, validated=0;
CubeManager cubeMgr;
cubeMgr.SetNumOpenCubes(50);
// Register the points and create a new
// ControlNet containing the refined measurements
for (int i=0; i<inNet.Size(); i++) {
ControlPoint &inPoint = inNet[i];
ControlPoint outPoint;
outPoint.SetType(inPoint.Type());
outPoint.SetId(inPoint.Id());
outPoint.SetUniversalGround(inPoint.UniversalLatitude(), inPoint.UniversalLongitude(), inPoint.Radius());
outPoint.SetHeld(inPoint.Held());
outPoint.SetIgnore(inPoint.Ignore());
// CHECK TO SEE IF THE CONTROL POINT SHOULD BE REGISTERED
// "Ignore" point and we are not registering ignored
if (inPoint.Ignore() && !register_ignored){
ignored++;
// add "Ignored" to network only if indicated
if (ui.GetBoolean("OUTPUTIGNORED")) {
// only include appropriate control measures
for (int j = 0; j < inPoint.Size(); j++) {
if (inPoint[j].IsMeasured()){
outPoint.Add(inPoint[j]);
}
else{
unmeasured++;
if (ui.GetBoolean("OUTPUTUNMEASURED")){
outPoint.Add(inPoint[j]);
}
}
}
// only add this point if OUTPUTIGNORED
outNet.Add(outPoint);
}
// go to next control point
continue;
}
// Not "Ignore" point (i.e. "valid") and we are only registering "Ignored"
else if (!inPoint.Ignore() && register_ignored) {
// add all "valid" points to network
// only include appropriate control measures
for (int j = 0; j < inPoint.Size(); j++) {
if (inPoint[j].IsMeasured()){
outPoint.Add(inPoint[j]);
}
else{
unmeasured++;
if (ui.GetBoolean("OUTPUTUNMEASURED")) {
outPoint.Add(inPoint[j]);
}
}
}
// add this point since it is not ignored
outNet.Add(outPoint);
// go to next control point
continue;
}
// "Ignore" point or "valid" point to be registered
else { // if ( (inPoint.Ignore() && register_ignored) || (!inPoint.Ignore() && !register_ignored ) ) {
if (inPoint.Ignore()) { outPoint.SetIgnore(false); }
ControlMeasure &patternCM = inPoint[inPoint.ReferenceIndex()];
Cube &patternCube = *cubeMgr.OpenCube(files.Filename(patternCM.CubeSerialNumber()));
ar->PatternChip()->TackCube(patternCM.Sample(), patternCM.Line());
ar->PatternChip()->Load(patternCube);
if (patternCM.IsValidated()) validated++;
if (!patternCM.IsMeasured()) continue;
if(!patternCM.IsReference()) {
patternCM.SetReference(true);
patternCM.SetChooserName("Application pointreg");
patternCM.SetDateTime();
}
outPoint.Add(patternCM);
// reset goodMeasureCount for this point before looping measures
int goodMeasureCount = 0;
// Register all the unvalidated measurements
for (int j = 0; j < inPoint.Size(); j++) {
// don't register the reference, go to next measure
if (j == inPoint.ReferenceIndex()){
if (!inPoint[j].Ignore()) goodMeasureCount++;
continue;
}
// if the measurement is valid, keep it as is and go to next measure
if (inPoint[j].IsValidated()) {
validated++;
outPoint.Add(inPoint[j]);
if (!inPoint[j].Ignore()) goodMeasureCount++;
continue;
}
// if the point is unmeasured, add to output only if necessary and go to next measure
if (!inPoint[j].IsMeasured()) {
unmeasured++;
if (ui.GetBoolean("OUTPUTUNMEASURED")) {
outPoint.Add(inPoint[j]);
}
continue;
}
ControlMeasure searchCM = inPoint[j];
// refresh pattern cube pointer to ensure it stays valid
Cube &patternCube = *cubeMgr.OpenCube(files.Filename(patternCM.CubeSerialNumber()));
Cube &searchCube = *cubeMgr.OpenCube(files.Filename(searchCM.CubeSerialNumber()));
ar->SearchChip()->TackCube(searchCM.Sample(), searchCM.Line());
try {
ar->SearchChip()->Load(searchCube,*(ar->PatternChip()),patternCube);
// If the measurements were correctly registered
// Write them to the new ControlNet
AutoReg::RegisterStatus res = ar->Register();
double score1, score2;
ar->ZScores(score1, score2);
searchCM.SetZScores(score1, score2);
if(res == AutoReg::Success) {
registered++;
searchCM.SetType(ControlMeasure::Automatic);
searchCM.SetError(searchCM.Sample() - ar->CubeSample(), searchCM.Line() - ar->CubeLine());
searchCM.SetCoordinate(ar->CubeSample(),ar->CubeLine());
searchCM.SetGoodnessOfFit(ar->GoodnessOfFit());
searchCM.SetChooserName("Application pointreg");
searchCM.SetDateTime();
searchCM.SetIgnore(false);
outPoint.Add(searchCM);
goodMeasureCount++;
}
// Else use the original marked as "Estimated"
else {
unregistered++;
searchCM.SetType(ControlMeasure::Estimated);
if(res == AutoReg::FitChipToleranceNotMet) {
searchCM.SetError(inPoint[j].Sample() - ar->CubeSample(), inPoint[j].Line() - ar->CubeLine());
searchCM.SetGoodnessOfFit(ar->GoodnessOfFit());
}
searchCM.SetChooserName("Application pointreg");
searchCM.SetDateTime();
searchCM.SetIgnore(true);
outPoint.Add(searchCM);
}
} catch (iException &e) {
e.Clear();
unregistered++;
searchCM.SetType(ControlMeasure::Estimated);
searchCM.SetChooserName("Application pointreg");
searchCM.SetDateTime();
searchCM.SetIgnore(true);
outPoint.Add(searchCM);
}
}
// Jeff Anderson put in this test (Dec 2, 2008) to allow for control
// points to be good so long as at least two measure could be
// registered. When a measure can't be registered to the reference then
// that measure is set to be ignored where in the past the whole point
// was ignored
if (goodMeasureCount < 2) {
if (!outPoint.Held() && outPoint.Type() != ControlPoint::Ground) {
outPoint.SetIgnore(true);
}
}
// Otherwise, ignore=false. This is already set at the beginning of the registration process
// Check to see if the control point has now been assigned
// to "ignore". If not, add it to the network. If so, only
// add it to the output if the OUTPUTIGNORED parameter is selected
// 2008-11-14 Jeannie Walldren
if (!outPoint.Ignore()) {
outNet.Add(outPoint);
}
else{
ignored++;
if (ui.GetBoolean("OUTPUTIGNORED")) outNet.Add(outPoint);
}
}
progress.CheckStatus();
}
// If flatfile was entered, create the flatfile
// The flatfile is comma seperated and can be imported into an excel
// spreadsheet
if (ui.WasEntered("FLATFILE")) {
string fFile = Filename(ui.GetFilename("FLATFILE")).Expanded();
ofstream os;
os.open(fFile.c_str(),ios::out);
os << "PointId,OriginalMeasurementSample,OriginalMeasurementLine," <<
"RegisteredMeasurementSample,RegisteredMeasurementLine,SampleDifference," <<
"LineDifference,ZScoreMin,ZScoreMax,GoodnessOfFit" << endl;
os << NULL8 << endl;
for (int i=0; i<outNet.Size(); i++) {
// get point from output control net and its
// corresponding point from input control net
ControlPoint outPoint = outNet[i];
ControlPoint *inPoint = inNet.Find(outPoint.Id());
if (outPoint.Ignore()) continue;
for (int i = 0; i<outPoint.Size();i++) {
// get measure and find its corresponding measure from input net
ControlMeasure cmTrans = outPoint[i];
ControlMeasure cmOrig = (*inPoint)[cmTrans.CubeSerialNumber()];
double inSamp = cmOrig.Sample();
double inLine = cmOrig.Line();
double outSamp = cmTrans.Sample();
double outLine = cmTrans.Line();
double sampErr = cmTrans.SampleError();
double lineErr = cmTrans.LineError();
double zScoreMin = cmTrans.GetZScoreMin();
if (fabs(zScoreMin) <= DBL_EPSILON || zScoreMin == NULL8) zScoreMin = 0;
double zScoreMax = cmTrans.GetZScoreMax();
if (fabs(zScoreMax) <= DBL_EPSILON || zScoreMax == NULL8) zScoreMax = 0;
double goodnessOfFit = cmTrans.GoodnessOfFit();
if (fabs(goodnessOfFit) <= DBL_EPSILON || goodnessOfFit == NULL8) goodnessOfFit = 0;
string pointId = outPoint.Id();
os << pointId << "," << inSamp << ","
<< inLine << "," << outSamp << ","
<< outLine << "," << sampErr << ","
<< lineErr << "," << zScoreMin << ","
<< zScoreMax << "," << goodnessOfFit << endl;
}
}
}
PvlGroup pLog("Points");
pLog+=PvlKeyword("Ignored", ignored);
Application::Log(pLog);
PvlGroup mLog("Measures");
mLog+=PvlKeyword("Validated", validated);
mLog+=PvlKeyword("Registered", registered);
mLog+=PvlKeyword("Unregistered", unregistered);
mLog+=PvlKeyword("Unmeasured", unmeasured);
Application::Log(mLog);
// Log Registration Statistics
Pvl arPvl = ar->RegistrationStatistics();
for(int i = 0; i < arPvl.Groups(); i++) {
Application::Log(arPvl.Group(i));
}
// add the auto registration information to print.prt
PvlGroup autoRegTemplate = ar->RegTemplate();
Application::Log(autoRegTemplate);
outNet.Write(ui.GetFilename("TO"));
delete ar;
}
void IsisMain() {
// Get user interface
UserInterface &ui = Application::GetUserInterface();
// Open the shift definitions file
Pvl shiftdef;
if (ui.WasEntered("SHIFTDEF")) {
shiftdef.Read(ui.GetFilename("SHIFTDEF"));
}
else {
shiftdef.AddObject(PvlObject("Hiccdstitch"));
}
PvlObject &stitch = shiftdef.FindObject("Hiccdstitch", Pvl::Traverse);
// Open the first cube. It will be matched to the second input cube.
HiJitCube trans;
CubeAttributeInput &attTrans = ui.GetInputAttribute("FROM");
vector<string> bandTrans = attTrans.Bands();
trans.SetVirtualBands(bandTrans);
trans.OpenCube(ui.GetFilename("FROM"), stitch);
// Open the second cube, it is held in place. We will be matching the
// first to this one by attempting to compute a sample/line translation
HiJitCube match;
CubeAttributeInput &attMatch = ui.GetInputAttribute("MATCH");
vector<string> bandMatch = attMatch.Bands();
match.SetVirtualBands(bandMatch);
match.OpenCube(ui.GetFilename("MATCH"), stitch);
// Ensure only one band
if ((trans.Bands() != 1) || (match.Bands() != 1)) {
string msg = "Input Cubes must have only one band!";
throw Isis::iException::Message(Isis::iException::User,msg,_FILEINFO_);
}
// Now test compatability (basically summing)
trans.Compatable(match);
// Determine intersection
if (!trans.intersects(match)) {
string msg = "Input Cubes do not overlap!";
throw Isis::iException::Message(Isis::iException::User,msg,_FILEINFO_);
}
// Get overlapping regions of each cube
HiJitCube::Corners fcorns, mcorns;
trans.overlap(match, fcorns);
match.overlap(trans, mcorns);
#if defined(ISIS_DEBUG)
cout << "FROM Poly: " << trans.PolyToString() << std::endl;
cout << "MATCH Poly: " << match.PolyToString() << std::endl;
cout << "From Overlap: (" << fcorns.topLeft.sample << ","
<< fcorns.topLeft.line << "), ("
<< fcorns.lowerRight.sample << ","
<< fcorns.lowerRight.line << ")\n" ;
cout << "Match Overlap: (" << mcorns.topLeft.sample << ","
<< mcorns.topLeft.line << "), ("
<< mcorns.lowerRight.sample << ","
<< mcorns.lowerRight.line << ")\n" ;
#endif
// We need to get a user definition of how to auto correlate around each
// of the grid points.
Pvl regdef;
Filename regFile(ui.GetFilename("REGDEF"));
regdef.Read(regFile.Expanded());
AutoReg *ar = AutoRegFactory::Create(regdef);
double flines(fcorns.lowerRight.line - fcorns.topLeft.line + 1.0);
double fsamps(fcorns.lowerRight.sample - fcorns.topLeft.sample + 1.0);
// We want to create a grid of control points that is N rows by M columns.
// Get row and column variables, if not entered, default to 1% of the input
// image size
int rows(1), cols(1);
if (ui.WasEntered("ROWS")) {
rows = ui.GetInteger("ROWS");
}
else {
rows = (int)(((flines - 1.0) / ar->SearchChip()->Lines()) + 1);
}
cols = ui.GetInteger("COLUMNS");
if (cols == 0) {
cols = (int)(((fsamps - 1.0) / ar->SearchChip()->Samples()) + 1);
}
// Calculate spacing for the grid of points
double lSpacing = floor(flines / rows);
double sSpacing = floor(fsamps / cols);
#if defined(ISIS_DEBUG)
cout << "# Samples in Overlap: " << fsamps << endl;
cout << "# Lines in Overlap : " << flines << endl;
cout << "# Rows: " << rows << endl;
cout << "# Columns: " << cols << endl;
cout << "Line Spacing: " << lSpacing << endl;
cout << "Sample Spacing: " << sSpacing << endl;
#endif
// Display the progress...10% 20% etc.
Progress prog;
prog.SetMaximumSteps(rows * cols);
prog.CheckStatus();
// Initialize control point network
ControlNet cn;
cn.SetType(ControlNet::ImageToImage);
cn.SetUserName(Application::UserName());
cn.SetCreatedDate(iTime::CurrentLocalTime());
// Get serial numbers for input cubes
string transSN = SerialNumber::Compose(trans, true);
string matchSN = SerialNumber::Compose(match, true);
cn.SetTarget(transSN);
cn.SetDescription("Records s/c jitter between two adjacent HiRISE images");
// Set up results parameter saves
JitterParms jparms;
jparms.fromCorns = fcorns;
jparms.fromJit = trans.GetInfo();
jparms.matchCorns = mcorns;
jparms.matchJit = match.GetInfo();
jparms.regFile = regFile.Expanded();
jparms.cols = cols;
jparms.rows = rows;
jparms.lSpacing = lSpacing;
jparms.sSpacing = sSpacing;
jparms.nSuspects = 0;
// Loop through grid of points and get statistics to compute
// translation values
RegList reglist;
double fline0(fcorns.topLeft.line-1.0), fsamp0(fcorns.topLeft.sample-1.0);
double mline0(mcorns.topLeft.line-1.0), msamp0(mcorns.topLeft.sample-1.0);
for (int r=0; r<rows; r++) {
int line = (int)(lSpacing / 2.0 + lSpacing * r + 0.5);
for (int c=0; c<cols; c++) {
int samp = (int)(sSpacing / 2.0 + sSpacing * c + 0.5);
ar->PatternChip()->TackCube(msamp0+samp, mline0+line);
ar->PatternChip()->Load(match);
ar->SearchChip()->TackCube(fsamp0+samp, fline0+line);
ar->SearchChip()->Load(trans);
// Set up ControlMeasure for cube to translate
ControlMeasure cmTrans;
cmTrans.SetCubeSerialNumber(transSN);
cmTrans.SetCoordinate(msamp0+samp, mline0+line,
ControlMeasure::Unmeasured);
cmTrans.SetChooserName("hijitreg");
cmTrans.SetReference(false);
// Set up ControlMeasure for the pattern/Match cube
ControlMeasure cmMatch;
cmMatch.SetCubeSerialNumber(matchSN);
cmMatch.SetCoordinate(fsamp0+samp, fline0+line,
ControlMeasure::Automatic);
cmMatch.SetChooserName("hijitreg");
cmMatch.SetReference(true);
// Match found
if (ar->Register()==AutoReg::Success) {
RegData reg;
reg.fLine = fline0 + line;
reg.fSamp = fsamp0 + samp;
reg.fLTime = trans.getLineTime(reg.fLine);
reg.mLine = mline0 + line;
reg.mSamp = msamp0 + samp;
reg.mLTime = match.getLineTime(reg.mLine);
reg.regLine = ar->CubeLine();
reg.regSamp = ar->CubeSample();
reg.regCorr = ar->GoodnessOfFit();
if (fabs(reg.regCorr) > 1.0) jparms.nSuspects++;
double sDiff = reg.fSamp - reg.regSamp;
double lDiff = reg.fLine - reg.regLine;
jparms.sStats.AddData(&sDiff,(unsigned int)1);
jparms.lStats.AddData(&lDiff,(unsigned int)1);
// Record the translation in the control point
cmTrans.SetCoordinate(ar->CubeSample(), ar->CubeLine(),
ControlMeasure::Automatic);
cmTrans.SetError(sDiff, lDiff);
cmTrans.SetGoodnessOfFit(ar->GoodnessOfFit());
// Reread the chip location centering the offset and compute
// linear regression statistics
try {
Chip &pchip(*ar->PatternChip());
Chip fchip(pchip.Samples(), pchip.Lines());
fchip.TackCube(ar->CubeSample(), ar->CubeLine());
fchip.Load(trans);
// Writes correlated chips to files for visual inspection
#if defined(ISIS_DEBUG)
ostringstream tstr;
tstr << "R" << r << "C" << c << "_chip.cub";
string fcname("from" + tstr.str());
string mcname("match" + tstr.str());
pchip.Write(mcname);
fchip.Write(fcname);
#endif
MultivariateStatistics mstats;
for (int line = 1 ; line <= fchip.Lines() ; line++) {
for(int sample = 1; sample < fchip.Samples(); sample++) {
double fchipValue = fchip.GetValue(sample,line);
double pchipValue = pchip.GetValue(sample,line);
mstats.AddData(&fchipValue, &pchipValue, 1);
}
}
// Get regression and correlation values
mstats.LinearRegression(reg.B0, reg.B1);
reg.Bcorr = mstats.Correlation();
if (IsSpecial(reg.B0)) throw 1;
if (IsSpecial(reg.B1)) throw 2;
if (IsSpecial(reg.Bcorr)) throw 3;
}
catch (...) {
// If fails, flag this condition
reg.B0 = 0.0;
reg.B1= 0.0;
reg.Bcorr = 0.0;
}
reglist.push_back(reg);
}
// Add the measures to a control point
string str = "Row " + iString(r) + " Column " + iString(c);
ControlPoint cp(str);
cp.SetType(ControlPoint::Tie);
cp.Add(cmTrans);
cp.Add(cmMatch);
if (!cmTrans.IsMeasured()) cp.SetIgnore(true);
cn.Add(cp);
prog.CheckStatus();
}
}
// If flatfile was entered, create the flatfile
// The flatfile is comma seperated and can be imported into an excel
// spreadsheet
if (ui.WasEntered("FLATFILE")) {
string fFile = ui.GetFilename("FLATFILE");
ofstream os;
string fFileExpanded = Filename(fFile).Expanded();
os.open(fFileExpanded.c_str(),ios::out);
dumpResults(os, reglist, jparms, *ar);
}
// If a cnet file was entered, write the ControlNet pvl to the file
if (ui.WasEntered("CNETFILE")) {
cn.Write(ui.GetFilename("CNETFILE"));
}
// Don't need the cubes opened anymore
trans.Close();
match.Close();
// Write translation to log
PvlGroup results("AverageTranslation");
if (jparms.sStats.ValidPixels() > 0) {
double sTrans = (int)(jparms.sStats.Average() * 100.0) / 100.0;
double lTrans = (int)(jparms.lStats.Average() * 100.0) / 100.0;
results += PvlKeyword ("Sample",sTrans);
results += PvlKeyword ("Line",lTrans);
results += PvlKeyword ("NSuspects",jparms.nSuspects);
}
else {
results += PvlKeyword ("Sample","NULL");
results += PvlKeyword ("Line","NULL");
}
Application::Log(results);
// add the auto registration information to print.prt
PvlGroup autoRegTemplate = ar->RegTemplate();
Application::Log(autoRegTemplate);
return;
}
void IsisMain() {
UserInterface &ui = Application::GetUserInterface();
double time0,//start time
time1,//end time
alti, //altitude of the spacecraftmore
fmc, //forward motion compensation rad/sec
horV, //horizontal velocity km/sec
radV, //radial velocity km/sec
rollV,//roll speed in rad/sec
led; //line exposure duration in seconds
Cube panCube;
iTime isisTime;
QString iStrTEMP;
int i,j,k,scFrameCode,insCode;
QString mission;
SpicePosition *spPos;
SpiceRotation *spRot;
//int nlines,nsamples,nbands;
double deg2rad = acos(-1.0)/180.0;
ProcessImport jp;
FileName transFile("$apollo15/translations/apollopantranstable.trn");
PvlTranslationTable transTable(transFile);
PvlGroup kernels_pvlG;
//scFrameCode and insCode from user input
mission = ui.GetString("MISSION");
if (mission == "APOLLO12") scFrameCode = -912000;
if (mission == "APOLLO14") scFrameCode = -914000;
if (mission == "APOLLO15") scFrameCode = -915000;
if (mission == "APOLLO16") scFrameCode = -916000;
if (mission == "APOLLO17") scFrameCode = -917000;
insCode = scFrameCode - 230;
try {
panCube.open(ui.GetFileName("FROM"),"rw");
}
catch (IException &e) {
throw IException(IException::User,
"Unable to open the file [" + ui.GetFileName("FROM") + "] as a cube.",
_FILEINFO_);
}
////////////////////////////////////////////build the cube header instrament group
PvlGroup inst_pvlG("Instrument");
PvlKeyword keyword;
//four that are the same for every panaramic mission
keyword.setName("SpacecraftName");
keyword.setValue(mission);
inst_pvlG.addKeyword(keyword);
keyword.setName("InstrumentName");
keyword.setValue(transTable.Translate("InstrumentName","whatever"));
inst_pvlG.addKeyword(keyword);
keyword.setName("InstrumentId");
keyword.setValue(transTable.Translate("InstrumentId","whatever"));
inst_pvlG.addKeyword(keyword);
keyword.setName("TargetName");
keyword.setValue(transTable.Translate("TargetName","whatever"));
inst_pvlG.addKeyword(keyword);
//three that need to be calculated from input values
horV = ui.GetDouble("VEL_HORIZ");
radV = ui.GetDouble("VEL_RADIAL");
alti = ui.GetDouble("CRAFT_ALTITUDE");
//caculate the LineExposureDuration (led)
if( ui.WasEntered("V/H_OVERRIDE") )
fmc = ui.GetDouble("V/H_OVERRIDE")/1000.0;
else
//forward motion compensation is directly equivalent to V/H
fmc = sqrt(horV*horV + radV*radV)/alti;
rollV = fmc*ROLLC; //roll angular velcoity is equal to V/H * constant (units rad/sec)
//led = rad/mm * sec/rad = radians(2.5)/FIDL / rollV (final units: sec/mm)
led = (2.5*acos(-1.0)/180.0)/rollV/FIDL;
//use led and the number of mm to determine the start and stop times
isisTime = ui.GetString("GMT");
//calculate starting and stoping times
time0 = isisTime.Et() - led*FIDL*21.5;
time1 = time0 + led*FIDL*43;
isisTime = time0;
keyword.setName("StartTime");
keyword.setValue(iStrTEMP=isisTime.UTC());
inst_pvlG.addKeyword(keyword);
isisTime = time1;
keyword.setName("StopTime");
keyword.setValue(iStrTEMP=isisTime.UTC());
inst_pvlG.addKeyword(keyword);
keyword.setName("LineExposureDuration");
//converted led to msec/mm--negative sign to account for the anti-parallel time and line axes
keyword.setValue(iStrTEMP=toString(-led),"sec/mm");
inst_pvlG.addKeyword(keyword);
panCube.putGroup(inst_pvlG);
///////////////////////////////////The kernals group
kernels_pvlG.setName("Kernels");
kernels_pvlG.clear();
keyword.setName("NaifFrameCode");
keyword.setValue(toString(insCode));
kernels_pvlG.addKeyword(keyword);
keyword.setName("LeapSecond");
keyword.setValue( transTable.Translate("LeapSecond","File1") );
kernels_pvlG.addKeyword(keyword);
keyword.setName("TargetAttitudeShape");
keyword.setValue( transTable.Translate("TargetAttitudeShape", "File1") );
keyword.addValue( transTable.Translate("TargetAttitudeShape", "File2") );
keyword.addValue( transTable.Translate("TargetAttitudeShape", "File3") );
kernels_pvlG.addKeyword(keyword);
keyword.setName("TargetPosition");
keyword.setValue("Table");
keyword.addValue( transTable.Translate("TargetPosition", "File1") );
keyword.addValue( transTable.Translate("TargetPosition", "File2") );
kernels_pvlG.addKeyword(keyword);
keyword.setName("ShapeModel");
keyword.setValue( transTable.Translate("ShapeModel", "File1") );
kernels_pvlG.addKeyword(keyword);
keyword.setName("InstrumentPointing");
keyword.setValue("Table");
kernels_pvlG.addKeyword(keyword);
keyword.setName("InstrumentPosition");
keyword.setValue("Table");
kernels_pvlG.addKeyword(keyword);
keyword.setName("InstrumentAddendum");
keyword.setValue( transTable.Translate("InstrumentAddendum",mission));
kernels_pvlG.addKeyword(keyword);
panCube.putGroup(kernels_pvlG);
//Load all the kernals
Load_Kernel(kernels_pvlG["TargetPosition"]);
Load_Kernel(kernels_pvlG["TargetAttitudeShape"]);
Load_Kernel(kernels_pvlG["LeapSecond"]);
//////////////////////////////////////////attach a target rotation table
char frameName[32];
SpiceInt frameCode;
SpiceBoolean found;
//get the framecode from the body code (301=MOON)
cidfrm_c(301, sizeof(frameName), &frameCode, frameName, &found);
if(!found) {
QString naifTarget = QString("IAU_MOOM");
namfrm_c(naifTarget.toAscii().data(), &frameCode);
if(frameCode == 0) {
QString msg = "Can not find NAIF code for [" + naifTarget + "]";
throw IException(IException::Io, msg, _FILEINFO_);
}
}
spRot = new SpiceRotation(frameCode);
//create a table from starttime to endtime (streched by 3%) with NODES entries
spRot->LoadCache(time0-0.015*(time1-time0), time1+0.015*(time1-time0), NODES);
Table tableTargetRot = spRot->Cache("BodyRotation");
tableTargetRot.Label() += PvlKeyword("Description", "Created by apollopaninit");
panCube.write(tableTargetRot);
//////////////////////////////////////////////////attach a sun position table
spPos = new SpicePosition(10,301); //Position of the sun (10) WRT to the MOON (301)
//create a table from starttime to endtime (stretched by 3%) with NODES entries
spPos->LoadCache(time0-0.015*(time1-time0), time1+0.015*(time1-time0), NODES);
Table tableSunPos = spPos->Cache("SunPosition");
tableSunPos.Label() += PvlKeyword("SpkTableStartTime", toString(time0-0.015*(time1-time0)));
tableSunPos.Label() += PvlKeyword("SpkTablleEndTime", toString(time1+0.015*(time1-time0)));
tableSunPos.Label() += PvlKeyword("Description", "Created by apollopaninit");
panCube.write(tableSunPos); //attach the table to the cube
/////////////Finding the principal scan line position and orientation
//get the radii of the MOON
SpiceInt tempRadii = 0;
bodvcd_c(301,"RADII",3,&tempRadii,R_MOON); //units are km
double omega,phi,kappa;
std::vector<double> posSel; //Seleno centric position
std::vector<double> sunPos; //sunPosition used to transform to J2000
std::vector<double> posJ20; //camera position in J2000
posSel.resize(3);
sunPos.resize(3);
posJ20.resize(3);
double temp,
vel[3] = { 0.0, 0.0, 0.0 }, //the total velocity vector (combined Horizonatal and normal components)
// in km/sec
M[3][3] = { { 0.0, 0.0, 0.0 },
{ 0.0, 0.0, 0.0 },
{ 0.0, 0.0, 0.0 } }, //rotation matrix
zDir[] = { 0.0, 0.0, 1.0 }, //selenographic Z axis
northPN[3] = { 0.0, 0.0, 0.0 }, //normal to the plane containing all the north/south directions,
// that is plane containing
// the origin, the z axis, and the primary point of intersection
northL[3] = { 0.0, 0.0, 0.0 }, //north direction vector in local horizontal plane
azm[3] = { 0.0, 0.0, 0.0 }, //azm direction of the veclocity vector in selenographic coordinates
azmP[3] = { 0.0, 0.0, 0.0 }, //azm rotated (partially) and projected into the image plane
norm[3] = { 0.0, 0.0, 0.0 }, //normal to the local horizontal plane
look[3] = { 0.0, 0.0, 0.0 }; //unit direction vector in the pincipal cameral look direction,
// parallel to the vector from the center of the moon through the spacecraft
double pos0[3] = { 0.0, 0.0, 0.0 }, //coordinate of the camera position
pInt[3] = { 0.0, 0.0, 0.0 }; //coordinate of the principle intersection point
/////////////////calculating the camera position for the center (principal scan line)
pos0[1] = ui.GetDouble("LON_NADIR")*deg2rad;
pos0[0] = ui.GetDouble("LAT_NADIR")*deg2rad;
pos0[2] = ui.GetDouble("CRAFT_ALTITUDE"); //units are km
Geographic2GeocentricLunar(pos0,pos0); //function is written so the input can also be the
// output
/////////////////////calculating the camera orientation for the center (principal) scan line
pInt[1] = ui.GetDouble("LON_INT")*deg2rad;
pInt[0] = ui.GetDouble("LAT_INT")*deg2rad;
pInt[2] = 0.0;
Geographic2GeocentricLunar(pInt,pInt); //function is written so the input can also be the output
//calculate the unit look direction vector in object space
look[0] = -pos0[0] + pInt[0];
look[1] = -pos0[1] + pInt[1];
look[2] = -pos0[2] + pInt[2];
temp = sqrt(look[0]*look[0] + look[1]*look[1] + look[2]*look[2]);
look[0] /= temp;
look[1] /= temp;
look[2] /= temp;
//the local normal vector is equal to pInt0/|pInt0|
temp = sqrt(pInt[0]*pInt[0] + pInt[1]*pInt[1] + pInt[2]*pInt[2]);
norm[0] = pInt[0]/temp;
norm[1] = pInt[1]/temp;
norm[2] = pInt[2]/temp;
//omega and phi are defined so that M(phi)M(omega)look = [0 0 -1] leaving only the roation
// around z axis to be found
omega = -atan2(look[1], look[2]); //omega rotation to zero look[1]
phi = atan2(-look[0], sin(omega)*look[1] - cos(omega)*look[2]); //phi rotation to zero look[0]
//use the horizontal velocity vector direction to solve for the last rotation; we will make the
// image x axis parallel to the in-image-plane projection of the horizontal direction of flight.
// The local normal cross the selenogrpahic z gives northPN (normal to the plane containing all
// the north/south directions), that is, the plane containing the origin, the z axis, and the
// primary point of intersection.
crossp(northPN,norm,northL);
//The normal to the plane containing all the north/south directions cross the local normal
// direction gives the local north/south direction in the local normal plane
crossp(norm, zDir, northPN);
if (northL[2] < 0) { //if by chance we got the south direction change the signs
northL[0] = -northL[0];
northL[1] = -northL[1];
northL[2] = -northL[2];
}
//define the rotation matrix to convert northL to the azimuth of flight.
// A left handed rotation of "VEL_AZM" around the positive normal direction will convert northL
// to azm
MfromVecLeftAngle(M,norm,ui.GetDouble("VEL_AZM")*deg2rad);
azm[0] = M[0][0]*northL[0] + M[0][1]*northL[1] + M[0][2]*northL[2];
azm[1] = M[1][0]*northL[0] + M[1][1]*northL[1] + M[1][2]*northL[2];
azm[2] = M[2][0]*northL[0] + M[2][1]*northL[1] + M[2][2]*northL[2];
//apply the two rotations we already know
MfromLeftEulers(M,omega,phi,0.0);
azmP[0] = M[0][0]*azm[0] + M[0][1]*azm[1] + M[0][2]*azm[2];
azmP[1] = M[1][0]*azm[1] + M[1][1]*azm[1] + M[1][2]*azm[2];
azmP[2] = M[2][0]*azm[2] + M[2][1]*azm[1] + M[2][2]*azm[2];
//subtract that portion of the azm that is perpindicular to the image plane (also the portion
// which is parallel to look) making azm a vector parrallel to the image plane
// Further, since we're now rotated into some coordinate system that differs from
// the image coordinate system by only a kappa rotation making the vector parrallel to the
// image plan is as simple as zeroing the z component (and as pointless to further calculations
// as a nat's fart in hurricane) nevertheless it completes the logical transition
azmP[2] = 0.0;
//finally the kappa rotation that will make azmP parallel (including sign) to the camera x axis
kappa = -atan2(-azmP[1], azmP[0]);
////////////////////Add an instrument position table
//Define the table records
TableRecord recordPos; // reacord to be added to table
// add x,y,z position labels and ephemeris time et to record
TableField x("J2000X", TableField::Double);
TableField y("J2000Y", TableField::Double);
TableField z("J2000Z", TableField::Double);
TableField t("ET", TableField::Double);
recordPos += x;
recordPos += y;
recordPos += z;
recordPos += t;
Table tablePos("InstrumentPosition", recordPos);
//now that the azm and norm vectors are defined
// the total velocity vector can be calcualted (km/sec)
vel[0] = horV*azm[0] + radV * norm[0];
vel[1] = horV*azm[1] + radV * norm[1];
vel[2] = horV*azm[2] + radV * norm[2];
//we'll provide a two ellement table (more is redundant because the motion is modeled as linear
// at this point) we'll extend the nodes 3% beyond the edges of the images to be sure
// rounding errors don't cause problems
temp = 0.515*(time1-time0); //3% extension
posSel[0] = pos0[0] - temp*vel[0]; //selenocentric coordinate calculation
posSel[1] = pos0[1] - temp*vel[1];
posSel[2] = pos0[2] - temp*vel[2];
//converting to J2000
temp = time0 - 0.005*(time1-time0); //et just before the first scan line
spPos->SetEphemerisTime(temp);
spRot->SetEphemerisTime(temp);
//Despite being labeled as J2000, the coordinates for the instrument position are in fact in
// target centric coordinated rotated to a system centered at the target with aces parallel
// to J2000, whatever that means
posJ20 = spRot->J2000Vector(posSel); //J2000Vector calls rotates the position vector into J2000,
// completing the transformation
recordPos[0] = posJ20[0];
recordPos[1] = posJ20[1];
recordPos[2] = posJ20[2];
recordPos[3] = temp; //temp = et (right now anyway)
tablePos += recordPos;
tablePos.Label() += PvlKeyword("SpkTableStartTime",toString(temp));
//now the other node
temp = 0.515*(time1-time0); //3% extension
posSel[0] = pos0[0] + temp*vel[0]; //selenocentric coordinate calculation
posSel[1] = pos0[1] + temp*vel[1];
posSel[2] = pos0[2] + temp*vel[2];
//converting to J2000
temp = time1 + 0.015*(time1-time0); //et just after the last scan line
spPos->SetEphemerisTime(temp);
spRot->SetEphemerisTime(temp);
//Despite being labeled as J2000, the coordinates for the instrument position are in fact
// in target centric coordinated rotated to a system centered at the target with aces
// parallel to J2000, whatever that means
posJ20 = spRot->J2000Vector(posSel); //J2000Vector calls rotates the position vector into J2000,
// completing the transformation
recordPos[0] = posJ20[0];
recordPos[1] = posJ20[1];
recordPos[2] = posJ20[2];
recordPos[3] = temp; //temp = et (right now anyway)
tablePos += recordPos;
tablePos.Label() += PvlKeyword("SpkTableEndTime",toString(temp));
tablePos.Label() += PvlKeyword("CacheType","Linear");
tablePos.Label() += PvlKeyword("Description","Created by apollopaninit");
panCube.write(tablePos); //now attach it to the table
/////////////////////////////attach a camera pointing table
double cacheSlope, //time between epoches in the table
rollComb, //magnitude of roll relative to the center in the middle of the epoch
relT, //relative time at the center of each epoch
Q[NODES][5], //NODES four ellement unit quarternions and et (to be calculated).
gimVec[3], //the direction of the gimbal rotation vector (to the cameras persepective
// this is always changing because the camera is mounted to the roll frame
// assembly which is mounted to the gimbal)
M0[3][3], //rotation matrix of the previous epoch
Mtemp1[3][3], //intermediate step in the multiplication of rotation matricies
Mtemp2[3][3], //intermediate step in the multiplication of rotation matricies
Mdg[3][3], //incremental rotation due the the gimbal motion in the camera frame
Mdr[3][3]; //the contribution of the roll motion in the camera frame during time
// cacheSlope
std::vector <double> M_J2toT; //rotation matrix from J2000 to the target frame
M_J2toT.resize(9);
//Table Definition
TableField q0("J2000Q0", TableField::Double);
TableField q1("J2000Q1", TableField::Double);
TableField q2("J2000Q2", TableField::Double);
TableField q3("J2000Q3", TableField::Double);
TableField et("ET", TableField::Double);
TableRecord recordRot;
recordRot += q0;
recordRot += q1;
recordRot += q2;
recordRot += q3;
recordRot += et;
Table tableRot("InstrumentPointing",recordRot);
//From the cameras perspective the gimbal motion is around a constantly changing axis,
// this is handled by combining a series of incremental rotations
MfromLeftEulers(M0, omega, phi, kappa); //rotation matrix in the center Q[(NOPDES-1)/2]
spRot->SetEphemerisTime(isisTime.Et());
M_J2toT = spRot->Matrix(); //this actually gives the rotation from J2000 to target centric
for(j=0; j<3; j++) //reformating M_J2toT to a 3x3
for(k=0; k<3; k++)
Mtemp1[j][k] = M_J2toT[3*j+k];
mxm_c(M0, Mtemp1, Mtemp2);
M2Q(Mtemp2, Q[(NODES-1)/2]); //save the middle scan line quarternion
Q[(NODES-1)/2][4] = (time1 + time0)/2.0; //time in the center of the image
//the total time is scaled up slightly so that nodes will extend just beyond the edge of the image
cacheSlope = 1.03*(time1 - time0)/(NODES-1);
//Mdr is constant for all the forward time computations
MfromLeftEulers(Mdr,cacheSlope*rollV,0.0,0.0);
for (i=(NODES-1)/2+1; i<NODES; i++) { //moving foward in time first
Q[i][4] = Q[i-1][4] + cacheSlope; //new time epoch
//epoch center time relative to the center line
relT = double(i - (NODES-1)/2 - 0.5)*cacheSlope;
rollComb = relT*rollV;
gimVec[0] = 0.0; //gimbal rotation vector direction in the middle of the epoch
gimVec[1] = cos(rollComb);
gimVec[2] = -sin(rollComb);
//incremental rotation due to the gimbal (forward motion compensation)
MfromVecLeftAngle(Mdg, gimVec, fmc*cacheSlope);
//the new rotation matrix is Transpose(Mdr)*Transpose(Mdg)*M0--NOTE the order swap and
// transposes are needed because both Mdr and Mdg were caculated in image space and need to be
// transposed to apply to object space
mtxm_c(Mdg, M0, Mtemp1);
//M0 is now what would typically be considered the rotation matrix of an image. It rotates a
// vector from the target centric space into camera space. However, what is standard to
// include in the cube labels is a rotation from camera space to J2000. M0 is therefore the
// transpose of the first part of this rotation. Transpose(M0) is the rotation from camera
// space to target centric space
mtxm_c(Mdr, Mtemp1, M0);
//now adding the rotation from the target frame to J2000
spRot->SetEphemerisTime(Q[i][4]);
//this actually gives the rotation from J2000 to target centric--hence the mxmt_c function being
// used later
M_J2toT = spRot->Matrix();
for(j=0; j<3; j++) //reformating M_J2toT to a 3x3
for(k=0; k<3; k++)
Mtemp1[j][k] = M_J2toT[3*j+k];
mxm_c(M0, Mtemp1, Mtemp2);
M2Q(Mtemp2, Q[i]); //convert to a quarterion
}
MfromLeftEulers(M0, omega, phi, kappa); //rotation matrix in the center Q[(NOPDES-1)/2]
//Mdr is constant for all the backward time computations
MfromLeftEulers(Mdr, -cacheSlope*rollV, 0.0, 0.0);
for (i=(NODES-1)/2-1; i>=0; i--) { //moving backward in time
Q[i][4] = Q[i+1][4] - cacheSlope; //new time epoch
//epoch center time relative to the center line
relT = double(i - (NODES-1)/2 + 0.5)*cacheSlope;
rollComb = relT*rollV;
gimVec[0] = 0.0; //gimbal rotation vector direction in the middle of the epoch
gimVec[1] = cos(rollComb);
gimVec[2] = -sin(rollComb);
//incremental rotation due to the gimbal (forward motion compensation)
MfromVecLeftAngle(Mdg, gimVec, -fmc*cacheSlope);
//the new rotation matrix is Transpose(Mdr)*Transpose(Mdg)*M0 NOTE the order swap and
// transposes are needed because both Mdr and Mdg were caculated in image space and need to be
// transposed to apply to object space
mtxm_c(Mdg, M0, Mtemp1);
//M0 is now what would typically be considered the rotation matrix of an image. It rotates a
// vector from the target centric space into camera space. However, what is standard to
// include in the cube labels is a rotation from camera space to J2000. M0 is therefore the
// transpose of the first part of this rotation. Transpose(M0) is the rotation from camera
// space to target centric space
mtxm_c(Mdr, Mtemp1, M0);
//now adding the rotation from the target frame to J2000
spRot->SetEphemerisTime(Q[i][4]);
M_J2toT = spRot->Matrix();
for(j=0; j<3; j++) //reformating M_J2toT to a 3x3
for(k=0; k<3; k++)
Mtemp1[j][k] = M_J2toT[3*j+k];
mxm_c(M0, Mtemp1, Mtemp2);
M2Q(Mtemp2, Q[i]); //convert to a quarterion
}
//fill in the table
for (i=0; i<NODES; i++) {
recordRot[0] = Q[i][0];
recordRot[1] = Q[i][1];
recordRot[2] = Q[i][2];
recordRot[3] = Q[i][3];
recordRot[4] = Q[i][4];
tableRot += recordRot;
}
tableRot.Label() += PvlKeyword("CkTableStartTime", toString(Q[0][4]));
tableRot.Label() += PvlKeyword("CkTableEndTime", toString(Q[NODES-1][4]));
tableRot.Label() += PvlKeyword("Description", "Created by appollopan2isis");
keyword.setName("TimeDependentFrames");
keyword.setValue(toString(scFrameCode));
keyword.addValue("1");
tableRot.Label() += keyword;
keyword.setName("ConstantFrames");
keyword.setValue(toString(insCode));
keyword.addValue(toString(scFrameCode));
tableRot.Label() += keyword;
keyword.setName("ConstantRotation");
keyword.setValue("1");
for (i=1;i<9;i++)
if (i%4 == 0) keyword.addValue("1");
else keyword.addValue("0");
tableRot.Label() += keyword;
panCube.write(tableRot);
/////////////////////////Attach a table with all the measurements of the fiducial mark locations.
Chip patternS,searchS; //scaled pattern and search chips
Cube fidC; //Fiducial image
//line and sample coordinates for looping through the panCube
double l=1,s=1,sample,line,sampleInitial=1,lineInitial=1,play;
int regStatus,
fidn,
panS,
refL, //number of lines in the patternS
refS; //number of samples in the patternS
Pvl pvl;
bool foundFirst=false;
QString fileName;
panS = panCube.sampleCount();
//Table definition
TableRecord recordFid;
TableField indexFid("FID_INEX",TableField::Integer);
TableField xFid("X_COORD",TableField::Double);
TableField yFid("Y_COORD",TableField::Double);
recordFid += indexFid;
recordFid += xFid;
recordFid += yFid;
Table tableFid("Fiducial Measurement",recordFid);
//read the image resolutions and scale the constants acordingly
double resolution = ui.GetDouble("MICRONS"), //pixel size in microns
scale = SCALE *5.0/resolution, //reduction scale for fast autoregistrations
searchHeight = SEARCHh*5.0/resolution, //number of lines (in 5-micron-pixels) in
// search space for the first fiducial
searchCellSize = SEARCHc*5.0/resolution, //height/width of search chips block
averageSamples = AVERs *5.0/resolution, //scaled smaples between fiducials
averageLines = AVERl *5.0/resolution; //scaled average distance between the top and
//bottom fiducials
if( 15.0/resolution < 1.5) play=1.5;
else play = 15.0/resolution;
//copy the patternS chip (the entire ApolloPanFiducialMark.cub)
FileName fiducialFileName("$apollo15/calibration/ApolloPanFiducialMark.cub");
fidC.open(fiducialFileName.expanded(),"r");
if( !fidC.isOpen() ) {
QString msg = "Unable to open the fiducial patternS cube: ApolloPanFiducialMark.cub\n";
throw IException(IException::User, msg, _FILEINFO_);
}
refL = fidC.lineCount();
refS = fidC.sampleCount();
//scaled pattern chip for fast matching
patternS.SetSize(int((refS-2)/SCALE), int((refL-2)/SCALE));
patternS.TackCube((refS-1)/2, (refL-1)/2);
patternS.Load(fidC, 0, SCALE);
//parameters for maximum correlation autoregestration
// see: file:///usgs/pkgs/isis3nightly2011-09-21/isis/doc/documents/patternSMatch/patternSMatch.html#DistanceTolerance
FileName fiducialPvl("$apollo15/templates/apolloPanFiducialFinder.pvl");
pvl.read(fiducialPvl.expanded()); //read in the autoreg parameters
AutoReg *arS = AutoRegFactory::Create(pvl);
*arS->PatternChip() = patternS; //patternS chip is constant
//set up a centroid measurer
CentroidApolloPan centroid(resolution);
Chip inputChip,selectionChip;
inputChip.SetSize(int(ceil(200*5.0/resolution)), int(ceil(200*5.0/resolution)));
fileName = ui.GetFileName("FROM");
if( panCube.pixelType() == 1) //UnsignedByte
centroid.setDNRange(12, 1e99); //8 bit bright target
else
centroid.setDNRange(3500, 1e99); //16 bit bright target
Progress progress;
progress.SetText("Locating Fiducials");
progress.SetMaximumSteps(91);
//Search for the first fiducial, search sizes are constanst
searchS.SetSize(int(searchCellSize/scale),int(searchCellSize/scale));
//now start searching along a horizontal line for the first fiducial mark
for(l = searchCellSize/2;
l<searchHeight+searchCellSize/2.0 && !foundFirst;
l+=searchCellSize-125*5.0/resolution) {
for (s = searchCellSize/2;
s < averageSamples + searchCellSize/2.0 && !foundFirst;
s += searchCellSize-125*5.0/resolution) {
searchS.TackCube(s, l);
searchS.Load(panCube, 0, scale);
*arS->SearchChip() = searchS;
regStatus = arS->Register();
if (regStatus == AutoReg::SuccessPixel) {
inputChip.TackCube(arS->CubeSample(), arS->CubeLine());
inputChip.Load(panCube, 0, 1);
inputChip.SetCubePosition(arS->CubeSample(), arS->CubeLine());
//continuous dynamic range selection
centroid.selectAdaptive(&inputChip, &selectionChip);
//elliptical trimming/smoothing
if (centroid.elipticalReduction(&selectionChip, 95, play, 2000)) {
//center of mass to reduce selection to a single measure
centroid.centerOfMass(&selectionChip, &sample, &line);
inputChip.SetChipPosition(sample, line);
sampleInitial = inputChip.CubeSample();
lineInitial = inputChip.CubeLine();
foundFirst = true; //once the first fiducial is found stop
}
}
}
}
if(s>=averageLines+searchCellSize/2.0) {
QString msg = "Unable to locate a fiducial mark in the input cube [" + fileName +
"]. Check FROM and MICRONS parameters.";
throw IException(IException::Io, msg, _FILEINFO_);
return;
}
progress.CheckStatus();
//record first fiducial measurement in the table
recordFid[0] = 0;
recordFid[1] = sampleInitial;
recordFid[2] = lineInitial;
tableFid += recordFid;
for (s= sampleInitial, l=lineInitial, fidn=0; s<panS; s+=averageSamples, fidn++) {
//corrections for half spacing of center fiducials
if (fidn == 22) s -= averageSamples/2.0;
if (fidn == 23) s -= averageSamples/2.0;
//look for the bottom fiducial
searchS.TackCube(s,l+averageLines);
searchS.Load(panCube, 0, scale);
*arS->SearchChip() = searchS;
regStatus = arS->Register();
if (regStatus == AutoReg::SuccessPixel) {
inputChip.TackCube(arS->CubeSample(), arS->CubeLine());
inputChip.Load(panCube,0,1);
inputChip.SetCubePosition(arS->CubeSample(), arS->CubeLine());
}
else { //if autoreg is unsuccessful, a larger window will be used
inputChip.TackCube(s, l+averageLines);
inputChip.Load(panCube, 0, 1);
inputChip.SetCubePosition(s, l+averageLines);
}
centroid.selectAdaptive(&inputChip, &selectionChip); //continuous dynamic range selection
//elliptical trimming/smoothing... if this fails move on
if (centroid.elipticalReduction(&selectionChip, 95, play, 2000) != 0 ) {
//center of mass to reduce selection to a single measure
centroid.centerOfMass(&selectionChip, &sample, &line);
inputChip.SetChipPosition(sample, line);
sample = inputChip.CubeSample();
line = inputChip.CubeLine();
recordFid[0] = fidn*2+1;
recordFid[1] = sample;
recordFid[2] = line;
tableFid += recordFid;
}
progress.CheckStatus();
//look for the top fiducial
if (s == sampleInitial) //first time through the loop?
continue; //then the top fiducial was already found
searchS.TackCube(s, l);
searchS.Load(panCube, 0, scale);
*arS->SearchChip() = searchS;
regStatus = arS->Register();
if (regStatus == AutoReg::SuccessPixel) {
inputChip.TackCube(arS->CubeSample(), arS->CubeLine());
inputChip.Load(panCube, 0, 1);
inputChip.SetCubePosition(arS->CubeSample(), arS->CubeLine());
}
else { //if autoreg is unsuccessful, a larger window will be used
inputChip.TackCube(s, l);
inputChip.Load(panCube, 0, 1);
inputChip.SetCubePosition(s, l);
}
centroid.selectAdaptive(&inputChip, &selectionChip);//continuous dynamic range selection
//inputChip.Write("inputTemp.cub");//debug
//selectionChip.Write("selectionTemp.cub");//debug
//elliptical trimming/smoothing... if this fails move on
if (centroid.elipticalReduction(&selectionChip, 95, play, 2000) !=0) {
//center of mass to reduce selection to a single measure
centroid.centerOfMass(&selectionChip, &sample, &line);
inputChip.SetChipPosition(sample, line);
//when finding the top fiducial both s and l are refined for a successful measurement,
// this will help follow trends in the scaned image
s = inputChip.CubeSample();
l = inputChip.CubeLine();
recordFid[0] = fidn*2;
recordFid[1] = s;
recordFid[2] = l;
tableFid += recordFid;
}
progress.CheckStatus();
}
panCube.write(tableFid);
//close the new cube
panCube.close(false);
panCube.open(ui.GetFileName("FROM"),"rw");
delete spPos;
delete spRot;
//now instantiate a camera to make sure all of this is working
ApolloPanoramicCamera* cam = (ApolloPanoramicCamera*)(panCube.camera());
//log the residual report from interior orientation
PvlGroup residualStats("InteriorOrientationStats");
residualStats += PvlKeyword("FiducialsFound", toString(tableFid.Records()));
residualStats += PvlKeyword("ResidualMax", toString(cam->intOriResidualMax()),"pixels");
residualStats += PvlKeyword("ResidualMean", toString(cam->intOriResidualMean()),"pixels");
residualStats += PvlKeyword("ResidualStdev", toString(cam->intOriResidualStdev()),"pixels");
Application::Log( residualStats );
return;
}
