CSeqVector::CSeqVector(const CSeq_loc& loc, const CTSE_Handle& top_tse,
EVectorCoding coding, ENa_strand strand)
: m_Scope(top_tse.GetScope()),
m_SeqMap(CSeqMap::GetSeqMapForSeq_loc(loc, &top_tse.GetScope())),
m_TSE(top_tse),
m_Strand(strand),
m_Coding(CSeq_data::e_not_set)
{
m_Size = m_SeqMap->GetLength(m_Scope);
m_Mol = m_SeqMap->GetMol();
SetCoding(coding);
}
CScopeInfo_Base::CScopeInfo_Base(const CTSE_Handle& tse,
const CTSE_Info_Object& info)
: m_TSE_ScopeInfo(&tse.x_GetScopeInfo()),
m_TSE_Handle(tse),
m_ObjectInfo(&reinterpret_cast<const CObject&>(info))
{
_ASSERT(x_Check(fForceZero | fForceInfo));
}
bool CTSE_Handle::OrderedBefore(const CTSE_Handle& tse) const
{
if ( *this == tse ) {
return false;
}
const CTSE_ScopeInfo& info1 = x_GetScopeInfo();
const CTSE_ScopeInfo& info2 = tse.x_GetScopeInfo();
CTSE_ScopeInfo::TBlobOrder order1 = info1.GetBlobOrder();
CTSE_ScopeInfo::TBlobOrder order2 = info2.GetBlobOrder();
if ( order1 != order2 ) {
_ASSERT((order1 < order2) || (order2 < order1));
return order1 < order2;
}
if ( info1.GetLoadIndex() != info2.GetLoadIndex() ) {
return info1.GetLoadIndex() < info2.GetLoadIndex();
}
return *this < tse;
}
CSeq_entry_Handle::CSeq_entry_Handle(const CSeq_entry_Info& info,
const CTSE_Handle& tse)
: m_Info(tse.x_GetScopeInfo().GetScopeLock(tse, info))
{
}
CSeq_entry_Handle::CSeq_entry_Handle(const CTSE_Handle& tse)
: m_Info(tse.x_GetScopeInfo().GetScopeLock(tse, tse.x_GetTSE_Info()))
{
}