Ejemplo n.º 1
0
    /**
     * Return true if the two workspaces are compatible for this operation
     * Virtual: will be overridden as needed.
     * @param lhs :: left-hand workspace to check
     * @param rhs :: right-hand workspace to check
     * @return flag for the compatibility to the two workspaces
     */
    bool BinaryOperation::checkCompatibility(const API::MatrixWorkspace_const_sptr lhs,const API::MatrixWorkspace_const_sptr rhs) const
    {
      Unit_const_sptr lhs_unit;
      Unit_const_sptr rhs_unit;
      if ( lhs->axes() && rhs->axes() ) // If one of these is a WorkspaceSingleValue then we don't want to check units match
      {
        lhs_unit = lhs->getAxis(0)->unit();
        rhs_unit = rhs->getAxis(0)->unit();
      }

      const std::string lhs_unitID = ( lhs_unit ? lhs_unit->unitID() : "" );
      const std::string rhs_unitID = ( rhs_unit ? rhs_unit->unitID() : "" );

      // Check the workspaces have the same units and distribution flag
      if ( lhs_unitID != rhs_unitID && lhs->blocksize() > 1 && rhs->blocksize() > 1 )
      {
        g_log.error("The two workspace are not compatible because they have different units on the X axis.");
        return false;
      }

      // Check the size compatibility
      if (!checkSizeCompatibility(lhs,rhs))
      {
        std::ostringstream ostr;
        ostr<<"The sizes of the two workspaces " <<
            "(" << lhs->getName() << ": " << lhs->getNumberHistograms() << " spectra, blocksize " << lhs->blocksize() << ")"
            << " and " <<
            "(" << rhs->getName() << ": " << rhs->getNumberHistograms() << " spectra, blocksize " << rhs->blocksize() << ")"
            << " are not compatible for algorithm "<<this->name();
        g_log.error() << ostr.str() << std::endl;
        throw std::invalid_argument( ostr.str() );
      }

      return true;
    }
Ejemplo n.º 2
0
/** Initialization method:
@param bkgWS    -- shared pointer to the workspace which contains background
@param sourceWS -- shared pointer to the workspace to remove background from
@param emode    -- energy conversion mode used during internal units conversion
(0 -- elastic, 1-direct, 2 indirect, as defined in Units conversion
@param pLog     -- pointer to the logger class which would report errors
@param nThreads -- number of threads to be used for background removal
@param inPlace  -- if the background removal occurs from the existing workspace
or target workspace has to be cloned.
*/
void BackgroundHelper::initialize(const API::MatrixWorkspace_const_sptr &bkgWS,
                                  const API::MatrixWorkspace_sptr &sourceWS,
                                  int emode, Kernel::Logger *pLog, int nThreads,
                                  bool inPlace) {
  m_bgWs = bkgWS;
  m_wkWS = sourceWS;
  m_Emode = emode;
  m_pgLog = pLog;
  m_inPlace = inPlace;

  std::string bgUnits = bkgWS->getAxis(0)->unit()->unitID();
  if (bgUnits != "TOF")
    throw std::invalid_argument(" Background Workspace: " + bkgWS->getName() +
                                " should be in the units of TOF");

  if (!(bkgWS->getNumberHistograms() == 1 ||
        sourceWS->getNumberHistograms() == bkgWS->getNumberHistograms()))
    throw std::invalid_argument(" Background Workspace: " + bkgWS->getName() +
                                " should have the same number of spectra as "
                                "source workspace or be a single histogram "
                                "workspace");

  auto WSUnit = sourceWS->getAxis(0)->unit();
  if (!WSUnit)
    throw std::invalid_argument(" Source Workspace: " + sourceWS->getName() +
                                " should have units");

  Geometry::IComponent_const_sptr source =
      sourceWS->getInstrument()->getSource();
  m_Sample = sourceWS->getInstrument()->getSample();
  if ((!source) || (!m_Sample))
    throw std::invalid_argument(
        "Instrument on Source workspace:" + sourceWS->getName() +
        "is not sufficiently defined: failed to get source and/or sample");
  m_L1 = source->getDistance(*m_Sample);

  // just in case.
  this->deleteUnitsConverters();
  // allocate the array of units converters to avoid units reallocation within a
  // loop
  m_WSUnit.assign(nThreads, NULL);
  for (int i = 0; i < nThreads; i++) {
    m_WSUnit[i] = WSUnit->clone();
  }

  m_singleValueBackground = false;
  if (bkgWS->getNumberHistograms() == 0)
    m_singleValueBackground = true;
  const MantidVec &dataX = bkgWS->dataX(0);
  const MantidVec &dataY = bkgWS->dataY(0);
  // const MantidVec& dataE = bkgWS->dataE(0);
  m_NBg = dataY[0];
  m_dtBg = dataX[1] - dataX[0];
  // m_ErrSq  = dataE[0]*dataE[0]; // needs further clarification

  m_Efix = this->getEi(sourceWS);
}
/** Method updates the column, which describes if current detector/spectra is
   masked
    It is used if one tries to process multiple workspaces obtained from a
   series of experiments  where the masked detectors can change */
void PreprocessDetectorsToMD::updateMasksState(
    const API::MatrixWorkspace_const_sptr &inputWS,
    DataObjects::TableWorkspace_sptr &targWS) {
  int *pMasksArray = targWS->getColDataArray<int>("detMask");
  if (!pMasksArray)
    throw std::invalid_argument(
        "target workspace " + targWS->getName() +
        " does not have defined masks column to update");

  size_t nHist = targWS->rowCount();
  const size_t nRows = inputWS->getNumberHistograms();
  if (nHist != nRows)
    throw std::invalid_argument(
        " source workspace " + inputWS->getName() + " and target workspace " +
        targWS->getName() +
        " are inconsistent as have different numner of detectors");

  uint32_t liveDetectorsCount(0);
  const auto &spectrumInfo = inputWS->spectrumInfo();
  for (size_t i = 0; i < nHist; i++) {
    if (!spectrumInfo.hasDetectors(i) || spectrumInfo.isMonitor(i))
      continue;

    // if masked detectors state is not used, masked detectors just ignored;
    bool maskDetector = spectrumInfo.isMasked(i);
    *(pMasksArray + liveDetectorsCount) = maskDetector ? 1 : 0;

    liveDetectorsCount++;
  }
}
Ejemplo n.º 4
0
size_t
EnggDiffFittingModel::guessBankID(API::MatrixWorkspace_const_sptr ws) const {
  const static std::string bankIDName = "bankid";
  if (ws->run().hasProperty(bankIDName)) {
    const auto log = dynamic_cast<Kernel::PropertyWithValue<int> *>(
        ws->run().getLogData(bankIDName));
    return boost::lexical_cast<size_t>(log->value());
  }

  // couldn't get it from sample logs - try using the old naming convention
  const std::string name = ws->getName();
  std::vector<std::string> chunks;
  boost::split(chunks, name, boost::is_any_of("_"));
  bool isNum = isDigit(chunks.back());
  if (!chunks.empty() && isNum) {
    try {
      return boost::lexical_cast<size_t>(chunks.back());
    } catch (boost::exception &) {
      // If we get a bad cast or something goes wrong then
      // the file is probably not what we were expecting
      // so throw a runtime error
      throw std::runtime_error(
          "Failed to fit file: The data was not what is expected. "
          "Does the file contain a focused workspace?");
    }
  }

  throw std::runtime_error("Could not guess run number from input workspace. "
                           "Are you sure it has been focused correctly?");
}
Ejemplo n.º 5
0
// internal helper function which extract one or two axis from input matrix
// workspace;
void MDTransfNoQ::getAxes(API::MatrixWorkspace_const_sptr inWS,
                          API::NumericAxis *&pXAxis,
                          API::NumericAxis *&pYAxis) {
  // get the X axis of input workspace, it has to be there; if not axis throws
  // invalid index
  pXAxis = dynamic_cast<API::NumericAxis *>(inWS->getAxis(0));
  if (!pXAxis) {
    std::string ERR =
        "Can not retrieve X axis from the source workspace: " + inWS->getName();
    throw(std::invalid_argument(ERR));
  }
  // get optional Y axis which can be used in NoQ-kind of algorithms
  pYAxis = dynamic_cast<API::NumericAxis *>(inWS->getAxis(1));
}
Ejemplo n.º 6
0
/**  returns the units, the input ws is actually in as they coinside with input
 * units for this class */
const std::string
MDTransfNoQ::inputUnitID(Kernel::DeltaEMode::Type mode,
                         API::MatrixWorkspace_const_sptr inWS) const {
  UNUSED_ARG(mode);
  API::NumericAxis *pXAxis;
  // get the X axis of input workspace, it has to be there; if not axis throws
  // invalid index
  pXAxis = dynamic_cast<API::NumericAxis *>(inWS->getAxis(0));
  if (!pXAxis) {
    std::string ERR =
        "Can not retrieve X axis from the source workspace: " + inWS->getName();
    throw(std::invalid_argument(ERR));
  }
  return pXAxis->unit()->unitID();
}
Ejemplo n.º 7
0
/** Method updates the column, which describes if current detector/spectra is
   masked
    It is used if one tries to process multiple workspaces obtained from a
   series of experiments  where the masked detectors can change */
void PreprocessDetectorsToMD::updateMasksState(
    const API::MatrixWorkspace_const_sptr &inputWS,
    DataObjects::TableWorkspace_sptr &targWS) {
  int *pMasksArray = targWS->getColDataArray<int>("detMask");
  if (!pMasksArray)
    throw std::invalid_argument(
        "target workspace " + targWS->getName() +
        " does not have defined masks column to update");

  size_t nHist = targWS->rowCount();
  const size_t nRows = inputWS->getNumberHistograms();
  if (nHist != nRows)
    throw std::invalid_argument(
        " source workspace " + inputWS->getName() + " and target workspace " +
        targWS->getName() +
        " are inconsistent as have different numner of detectors");

  uint32_t liveDetectorsCount(0);
  for (size_t i = 0; i < nHist; i++) {
    // get detector or detector group which corresponds to the spectra i
    Geometry::IDetector_const_sptr spDet;
    try {
      spDet = inputWS->getDetector(i);
    } catch (Kernel::Exception::NotFoundError &) {
      continue;
    }

    // Check that we aren't dealing with monitor...
    if (spDet->isMonitor())
      continue;

    // if masked detectors state is not used, masked detectors just ignored;
    bool maskDetector = spDet->isMasked();
    *(pMasksArray + liveDetectorsCount) = maskDetector ? 1 : 0;

    liveDetectorsCount++;
  }
}