/**
* Return true if the two workspaces are compatible for this operation
* Virtual: will be overridden as needed.
* @param lhs :: left-hand workspace to check
* @param rhs :: right-hand workspace to check
* @return flag for the compatibility to the two workspaces
*/
bool BinaryOperation::checkCompatibility(const API::MatrixWorkspace_const_sptr lhs,const API::MatrixWorkspace_const_sptr rhs) const
{
Unit_const_sptr lhs_unit;
Unit_const_sptr rhs_unit;
if ( lhs->axes() && rhs->axes() ) // If one of these is a WorkspaceSingleValue then we don't want to check units match
{
lhs_unit = lhs->getAxis(0)->unit();
rhs_unit = rhs->getAxis(0)->unit();
}
const std::string lhs_unitID = ( lhs_unit ? lhs_unit->unitID() : "" );
const std::string rhs_unitID = ( rhs_unit ? rhs_unit->unitID() : "" );
// Check the workspaces have the same units and distribution flag
if ( lhs_unitID != rhs_unitID && lhs->blocksize() > 1 && rhs->blocksize() > 1 )
{
g_log.error("The two workspace are not compatible because they have different units on the X axis.");
return false;
}
// Check the size compatibility
if (!checkSizeCompatibility(lhs,rhs))
{
std::ostringstream ostr;
ostr<<"The sizes of the two workspaces " <<
"(" << lhs->getName() << ": " << lhs->getNumberHistograms() << " spectra, blocksize " << lhs->blocksize() << ")"
<< " and " <<
"(" << rhs->getName() << ": " << rhs->getNumberHistograms() << " spectra, blocksize " << rhs->blocksize() << ")"
<< " are not compatible for algorithm "<<this->name();
g_log.error() << ostr.str() << std::endl;
throw std::invalid_argument( ostr.str() );
}
return true;
}
/** Initialization method:
@param bkgWS -- shared pointer to the workspace which contains background
@param sourceWS -- shared pointer to the workspace to remove background from
@param emode -- energy conversion mode used during internal units conversion
(0 -- elastic, 1-direct, 2 indirect, as defined in Units conversion
@param pLog -- pointer to the logger class which would report errors
@param nThreads -- number of threads to be used for background removal
@param inPlace -- if the background removal occurs from the existing workspace
or target workspace has to be cloned.
*/
void BackgroundHelper::initialize(const API::MatrixWorkspace_const_sptr &bkgWS,
const API::MatrixWorkspace_sptr &sourceWS,
int emode, Kernel::Logger *pLog, int nThreads,
bool inPlace) {
m_bgWs = bkgWS;
m_wkWS = sourceWS;
m_Emode = emode;
m_pgLog = pLog;
m_inPlace = inPlace;
std::string bgUnits = bkgWS->getAxis(0)->unit()->unitID();
if (bgUnits != "TOF")
throw std::invalid_argument(" Background Workspace: " + bkgWS->getName() +
" should be in the units of TOF");
if (!(bkgWS->getNumberHistograms() == 1 ||
sourceWS->getNumberHistograms() == bkgWS->getNumberHistograms()))
throw std::invalid_argument(" Background Workspace: " + bkgWS->getName() +
" should have the same number of spectra as "
"source workspace or be a single histogram "
"workspace");
auto WSUnit = sourceWS->getAxis(0)->unit();
if (!WSUnit)
throw std::invalid_argument(" Source Workspace: " + sourceWS->getName() +
" should have units");
Geometry::IComponent_const_sptr source =
sourceWS->getInstrument()->getSource();
m_Sample = sourceWS->getInstrument()->getSample();
if ((!source) || (!m_Sample))
throw std::invalid_argument(
"Instrument on Source workspace:" + sourceWS->getName() +
"is not sufficiently defined: failed to get source and/or sample");
m_L1 = source->getDistance(*m_Sample);
// just in case.
this->deleteUnitsConverters();
// allocate the array of units converters to avoid units reallocation within a
// loop
m_WSUnit.assign(nThreads, NULL);
for (int i = 0; i < nThreads; i++) {
m_WSUnit[i] = WSUnit->clone();
}
m_singleValueBackground = false;
if (bkgWS->getNumberHistograms() == 0)
m_singleValueBackground = true;
const MantidVec &dataX = bkgWS->dataX(0);
const MantidVec &dataY = bkgWS->dataY(0);
// const MantidVec& dataE = bkgWS->dataE(0);
m_NBg = dataY[0];
m_dtBg = dataX[1] - dataX[0];
// m_ErrSq = dataE[0]*dataE[0]; // needs further clarification
m_Efix = this->getEi(sourceWS);
}
/** Method updates the column, which describes if current detector/spectra is
masked
It is used if one tries to process multiple workspaces obtained from a
series of experiments where the masked detectors can change */
void PreprocessDetectorsToMD::updateMasksState(
const API::MatrixWorkspace_const_sptr &inputWS,
DataObjects::TableWorkspace_sptr &targWS) {
int *pMasksArray = targWS->getColDataArray<int>("detMask");
if (!pMasksArray)
throw std::invalid_argument(
"target workspace " + targWS->getName() +
" does not have defined masks column to update");
size_t nHist = targWS->rowCount();
const size_t nRows = inputWS->getNumberHistograms();
if (nHist != nRows)
throw std::invalid_argument(
" source workspace " + inputWS->getName() + " and target workspace " +
targWS->getName() +
" are inconsistent as have different numner of detectors");
uint32_t liveDetectorsCount(0);
const auto &spectrumInfo = inputWS->spectrumInfo();
for (size_t i = 0; i < nHist; i++) {
if (!spectrumInfo.hasDetectors(i) || spectrumInfo.isMonitor(i))
continue;
// if masked detectors state is not used, masked detectors just ignored;
bool maskDetector = spectrumInfo.isMasked(i);
*(pMasksArray + liveDetectorsCount) = maskDetector ? 1 : 0;
liveDetectorsCount++;
}
}
size_t
EnggDiffFittingModel::guessBankID(API::MatrixWorkspace_const_sptr ws) const {
const static std::string bankIDName = "bankid";
if (ws->run().hasProperty(bankIDName)) {
const auto log = dynamic_cast<Kernel::PropertyWithValue<int> *>(
ws->run().getLogData(bankIDName));
return boost::lexical_cast<size_t>(log->value());
}
// couldn't get it from sample logs - try using the old naming convention
const std::string name = ws->getName();
std::vector<std::string> chunks;
boost::split(chunks, name, boost::is_any_of("_"));
bool isNum = isDigit(chunks.back());
if (!chunks.empty() && isNum) {
try {
return boost::lexical_cast<size_t>(chunks.back());
} catch (boost::exception &) {
// If we get a bad cast or something goes wrong then
// the file is probably not what we were expecting
// so throw a runtime error
throw std::runtime_error(
"Failed to fit file: The data was not what is expected. "
"Does the file contain a focused workspace?");
}
}
throw std::runtime_error("Could not guess run number from input workspace. "
"Are you sure it has been focused correctly?");
}
// internal helper function which extract one or two axis from input matrix
// workspace;
void MDTransfNoQ::getAxes(API::MatrixWorkspace_const_sptr inWS,
API::NumericAxis *&pXAxis,
API::NumericAxis *&pYAxis) {
// get the X axis of input workspace, it has to be there; if not axis throws
// invalid index
pXAxis = dynamic_cast<API::NumericAxis *>(inWS->getAxis(0));
if (!pXAxis) {
std::string ERR =
"Can not retrieve X axis from the source workspace: " + inWS->getName();
throw(std::invalid_argument(ERR));
}
// get optional Y axis which can be used in NoQ-kind of algorithms
pYAxis = dynamic_cast<API::NumericAxis *>(inWS->getAxis(1));
}
/** returns the units, the input ws is actually in as they coinside with input
* units for this class */
const std::string
MDTransfNoQ::inputUnitID(Kernel::DeltaEMode::Type mode,
API::MatrixWorkspace_const_sptr inWS) const {
UNUSED_ARG(mode);
API::NumericAxis *pXAxis;
// get the X axis of input workspace, it has to be there; if not axis throws
// invalid index
pXAxis = dynamic_cast<API::NumericAxis *>(inWS->getAxis(0));
if (!pXAxis) {
std::string ERR =
"Can not retrieve X axis from the source workspace: " + inWS->getName();
throw(std::invalid_argument(ERR));
}
return pXAxis->unit()->unitID();
}
/** Method updates the column, which describes if current detector/spectra is
masked
It is used if one tries to process multiple workspaces obtained from a
series of experiments where the masked detectors can change */
void PreprocessDetectorsToMD::updateMasksState(
const API::MatrixWorkspace_const_sptr &inputWS,
DataObjects::TableWorkspace_sptr &targWS) {
int *pMasksArray = targWS->getColDataArray<int>("detMask");
if (!pMasksArray)
throw std::invalid_argument(
"target workspace " + targWS->getName() +
" does not have defined masks column to update");
size_t nHist = targWS->rowCount();
const size_t nRows = inputWS->getNumberHistograms();
if (nHist != nRows)
throw std::invalid_argument(
" source workspace " + inputWS->getName() + " and target workspace " +
targWS->getName() +
" are inconsistent as have different numner of detectors");
uint32_t liveDetectorsCount(0);
for (size_t i = 0; i < nHist; i++) {
// get detector or detector group which corresponds to the spectra i
Geometry::IDetector_const_sptr spDet;
try {
spDet = inputWS->getDetector(i);
} catch (Kernel::Exception::NotFoundError &) {
continue;
}
// Check that we aren't dealing with monitor...
if (spDet->isMonitor())
continue;
// if masked detectors state is not used, masked detectors just ignored;
bool maskDetector = spDet->isMasked();
*(pMasksArray + liveDetectorsCount) = maskDetector ? 1 : 0;
liveDetectorsCount++;
}
}