int
HYPRE_StructVectorSetBoxValues( HYPRE_StructVector vector,
int *ilower,
int *iupper,
double *values )
{
hypre_Index new_ilower;
hypre_Index new_iupper;
hypre_Box *new_value_box;
int d;
int ierr = 0;
hypre_ClearIndex(new_ilower);
hypre_ClearIndex(new_iupper);
for (d = 0; d < hypre_StructGridDim(hypre_StructVectorGrid(vector)); d++)
{
hypre_IndexD(new_ilower, d) = ilower[d];
hypre_IndexD(new_iupper, d) = iupper[d];
}
new_value_box = hypre_BoxCreate();
hypre_BoxSetExtents(new_value_box, new_ilower, new_iupper);
ierr = hypre_StructVectorSetBoxValues(vector, new_value_box, values, 0 );
hypre_BoxDestroy(new_value_box);
return ierr;
}
int
HYPRE_StructMatrixSetBoxValues( HYPRE_StructMatrix matrix,
int *ilower,
int *iupper,
int num_stencil_indices,
int *stencil_indices,
double *values )
{
hypre_Index new_ilower;
hypre_Index new_iupper;
hypre_Box *new_value_box;
int d;
int ierr = 0;
hypre_ClearIndex(new_ilower);
hypre_ClearIndex(new_iupper);
for (d = 0; d < hypre_StructGridDim(hypre_StructMatrixGrid(matrix)); d++)
{
hypre_IndexD(new_ilower, d) = ilower[d];
hypre_IndexD(new_iupper, d) = iupper[d];
}
new_value_box = hypre_BoxCreate();
hypre_BoxSetExtents(new_value_box, new_ilower, new_iupper);
ierr = hypre_StructMatrixSetBoxValues(matrix, new_value_box,
num_stencil_indices, stencil_indices,
values, 0);
hypre_BoxDestroy(new_value_box);
return (ierr);
}
int
HYPRE_StructGridSetPeriodic( HYPRE_StructGrid grid,
int *periodic )
{
hypre_Index new_periodic;
int d;
hypre_ClearIndex(new_periodic);
for (d = 0; d < hypre_StructGridDim(grid); d++)
{
hypre_IndexD(new_periodic, d) = periodic[d];
}
return ( hypre_StructGridSetPeriodic(grid, new_periodic) );
}
HYPRE_Int
HYPRE_StructVectorSetValues( HYPRE_StructVector vector,
HYPRE_Int *grid_index,
double values )
{
hypre_Index new_grid_index;
HYPRE_Int d;
hypre_ClearIndex(new_grid_index);
for (d = 0; d < hypre_StructGridDim(hypre_StructVectorGrid(vector)); d++)
{
hypre_IndexD(new_grid_index, d) = grid_index[d];
}
hypre_StructVectorSetValues(vector, new_grid_index, &values, 0, -1, 0);
return hypre_error_flag;
}
int
HYPRE_StructGridSetExtents( HYPRE_StructGrid grid,
int *ilower,
int *iupper )
{
hypre_Index new_ilower;
hypre_Index new_iupper;
int d;
hypre_ClearIndex(new_ilower);
hypre_ClearIndex(new_iupper);
for (d = 0; d < hypre_StructGridDim((hypre_StructGrid *) grid); d++)
{
hypre_IndexD(new_ilower, d) = ilower[d];
hypre_IndexD(new_iupper, d) = iupper[d];
}
return ( hypre_StructGridSetExtents(grid, new_ilower, new_iupper) );
}
int
HYPRE_StructVectorSetValues( HYPRE_StructVector vector,
int *grid_index,
double values )
{
hypre_Index new_grid_index;
int d;
int ierr = 0;
hypre_ClearIndex(new_grid_index);
for (d = 0; d < hypre_StructGridDim(hypre_StructVectorGrid(vector)); d++)
{
hypre_IndexD(new_grid_index, d) = grid_index[d];
}
ierr = hypre_StructVectorSetValues(vector, new_grid_index, values, 0);
return ierr;
}
int
HYPRE_StructMatrixSetValues( HYPRE_StructMatrix matrix,
int *grid_index,
int num_stencil_indices,
int *stencil_indices,
double *values )
{
hypre_Index new_grid_index;
int d;
int ierr = 0;
hypre_ClearIndex(new_grid_index);
for (d = 0; d < hypre_StructGridDim(hypre_StructMatrixGrid(matrix)); d++)
{
hypre_IndexD(new_grid_index, d) = grid_index[d];
}
ierr = hypre_StructMatrixSetValues(matrix, new_grid_index,
num_stencil_indices, stencil_indices,
values, 0);
return (ierr);
}
HYPRE_Int
hypre_PFMGSetup( void *pfmg_vdata,
hypre_StructMatrix *A,
hypre_StructVector *b,
hypre_StructVector *x )
{
hypre_PFMGData *pfmg_data = pfmg_vdata;
MPI_Comm comm = (pfmg_data -> comm);
HYPRE_Int relax_type = (pfmg_data -> relax_type);
HYPRE_Int usr_jacobi_weight= (pfmg_data -> usr_jacobi_weight);
double jacobi_weight = (pfmg_data -> jacobi_weight);
HYPRE_Int skip_relax = (pfmg_data -> skip_relax);
double *dxyz = (pfmg_data -> dxyz);
HYPRE_Int rap_type;
HYPRE_Int max_iter;
HYPRE_Int max_levels;
HYPRE_Int num_levels;
hypre_Index cindex;
hypre_Index findex;
hypre_Index stride;
hypre_Index coarsen;
HYPRE_Int *cdir_l;
HYPRE_Int *active_l;
hypre_StructGrid **grid_l;
hypre_StructGrid **P_grid_l;
double *data;
HYPRE_Int data_size = 0;
double *relax_weights;
double *mean, *deviation;
double alpha, beta;
hypre_StructMatrix **A_l;
hypre_StructMatrix **P_l;
hypre_StructMatrix **RT_l;
hypre_StructVector **b_l;
hypre_StructVector **x_l;
/* temp vectors */
hypre_StructVector **tx_l;
hypre_StructVector **r_l;
hypre_StructVector **e_l;
void **relax_data_l;
void **matvec_data_l;
void **restrict_data_l;
void **interp_data_l;
hypre_StructGrid *grid;
HYPRE_Int dim;
hypre_Box *cbox;
double min_dxyz;
HYPRE_Int cdir, periodic, cmaxsize;
HYPRE_Int d, l;
HYPRE_Int dxyz_flag;
HYPRE_Int b_num_ghost[] = {0, 0, 0, 0, 0, 0};
HYPRE_Int x_num_ghost[] = {1, 1, 1, 1, 1, 1};
HYPRE_Int ierr = 0;
#if DEBUG
char filename[255];
#endif
/*-----------------------------------------------------
* Set up coarse grids
*-----------------------------------------------------*/
grid = hypre_StructMatrixGrid(A);
dim = hypre_StructGridDim(grid);
/* Compute a new max_levels value based on the grid */
cbox = hypre_BoxDuplicate(hypre_StructGridBoundingBox(grid));
max_levels =
hypre_Log2(hypre_BoxSizeD(cbox, 0)) + 2 +
hypre_Log2(hypre_BoxSizeD(cbox, 1)) + 2 +
hypre_Log2(hypre_BoxSizeD(cbox, 2)) + 2;
if ((pfmg_data -> max_levels) > 0)
{
max_levels = hypre_min(max_levels, (pfmg_data -> max_levels));
}
(pfmg_data -> max_levels) = max_levels;
/* compute dxyz */
if ((dxyz[0] == 0) || (dxyz[1] == 0) || (dxyz[2] == 0))
{
mean = hypre_CTAlloc(double, 3);
deviation = hypre_CTAlloc(double, 3);
hypre_PFMGComputeDxyz(A, dxyz, mean, deviation);
dxyz_flag= 0;
for (d = 0; d < dim; d++)
{
deviation[d] -= mean[d]*mean[d];
/* square of coeff. of variation */
if (deviation[d]/(mean[d]*mean[d]) > .1)
{
dxyz_flag= 1;
break;
}
}
hypre_TFree(mean);
hypre_TFree(deviation);
}
int hypre_StructGridAssembleWithAP( hypre_StructGrid *grid )
{
int ierr = 0;
int tmp_i;
int size, global_num_boxes, num_local_boxes;
int i, j, d, k, index;
int num_procs, myid;
int *sendbuf8, *recvbuf8, *sendbuf2, *recvbuf2;
int min_box_size, max_box_size;
int global_min_box_size, global_max_box_size;
int *ids;
int max_regions, max_refinements, ologp;
double gamma;
hypre_Index min_index, max_index;
int prune;
hypre_Box *box;
MPI_Comm comm = hypre_StructGridComm(grid);
hypre_Box *bounding_box = hypre_StructGridBoundingBox(grid);
hypre_BoxArray *local_boxes = hypre_StructGridBoxes(grid);
int dim = hypre_StructGridDim(grid);
hypre_BoxNeighbors *neighbors = hypre_StructGridNeighbors(grid);
int max_distance = hypre_StructGridMaxDistance(grid);
hypre_IndexRef periodic = hypre_StructGridPeriodic(grid);
int *local_boxnums;
double dbl_global_size, tmp_dbl;
hypre_BoxArray *my_partition;
int *part_ids, *part_boxnums;
int *proc_array, proc_count, proc_alloc, count;
int *tmp_proc_ids = NULL;
int max_response_size;
int *ap_proc_ids, *send_buf, *send_buf_starts;
int *response_buf, *response_buf_starts;
hypre_BoxArray *neighbor_boxes, *n_boxes_copy;
int *neighbor_proc_ids, *neighbor_boxnums;
int *order_index, *delete_array;
int tmp_id, start, first_local;
int grow, grow_array[6];
hypre_Box *grow_box;
int *numghost;
int ghostsize;
hypre_Box *ghostbox;
hypre_StructAssumedPart *assumed_part;
hypre_DataExchangeResponse response_obj;
int px = hypre_IndexX(periodic);
int py = hypre_IndexY(periodic);
int pz = hypre_IndexZ(periodic);
int i_periodic = px ? 1 : 0;
int j_periodic = py ? 1 : 0;
int k_periodic = pz ? 1 : 0;
int num_periods, multiple_ap, p;
hypre_Box *result_box, *period_box;
hypre_Index *pshifts;
hypre_IndexRef pshift;
#if NEIGH_PRINT
double start_time, end_time;
#endif
/*---------------------------------------------
Step 1: Initializations
-----------------------------------------------*/
prune = 1; /* default is to prune */
num_local_boxes = hypre_BoxArraySize(local_boxes);
num_periods = (1+2*i_periodic) * (1+2*j_periodic) * (1+2*k_periodic);
MPI_Comm_size(comm, &num_procs);
MPI_Comm_rank(comm, &myid);
/*---------------------------------------------
Step 2: Determine the global size, total number of boxes,
and global bounding box.
Also get the min and max box sizes
since it is convenient to do so.
-----------------------------------------------*/
if (neighbors == NULL)
{
/*these may not be needed - check later */
ids = hypre_TAlloc(int, num_local_boxes);
/* for the vol and number of boxes */
sendbuf2 = hypre_CTAlloc(int, 2);
recvbuf2 = hypre_CTAlloc(int, 2);
size = 0;
bounding_box = hypre_BoxCreate();
grow_box = hypre_BoxCreate();
if (num_local_boxes)
{
min_box_size = hypre_BoxVolume( hypre_BoxArrayBox(local_boxes, 0));
max_box_size = hypre_BoxVolume( hypre_BoxArrayBox(local_boxes, 0));
/* initialize min and max */
for (d=0; d<3; d++)
{
hypre_IndexD(min_index, d) = pow(2,30);
hypre_IndexD(max_index, d) = -pow(2,30);
}
hypre_ForBoxI(i, local_boxes)
{
box = hypre_BoxArrayBox(local_boxes, i);
/* get global size and number of boxes */
tmp_i = hypre_BoxVolume(box);
size += tmp_i;
min_box_size = hypre_min(min_box_size, tmp_i);
max_box_size = hypre_max(max_box_size, tmp_i);
/* set id */
ids[i] = i;
/* 1/3/05 we need this for the case of holes in the domain. (I had
commented
it out on 12/04 - as I thought this was not necessary. */
/* zero volume boxes - still look at for getting the bounding box */
if (hypre_BoxVolume(box) == 0) /* zero volume boxes - still count */
{
hypre_CopyBox(box, grow_box);
for (d = 0; d < 3; d++)
{
if(!hypre_BoxSizeD(box, d))
{
grow = (hypre_BoxIMinD(box, d) - hypre_BoxIMaxD(box, d) + 1)/2;
grow_array[2*d] = grow;
grow_array[2*d+1] = grow;
}
else
{
grow_array[2*d] = 0;
grow_array[2*d+1] = 0;
}
}
/* expand the box */
hypre_BoxExpand(grow_box, grow_array);
box = grow_box; /*pointer copy*/
}
/*now we have a vol > 0 box */
for (d = 0; d < dim; d++) /* for each dimension */
{
hypre_IndexD(min_index, d) = hypre_min( hypre_IndexD(min_index, d),
hypre_BoxIMinD(box, d));
hypre_IndexD(max_index, d) = hypre_max( hypre_IndexD(max_index, d),
hypre_BoxIMaxD(box, d));
}
}/*end for each box loop */
/* bounding box extents */
hypre_BoxSetExtents(bounding_box, min_index, max_index);
}
HYPRE_Int
hypre_StructInterpAssemble( hypre_StructMatrix *A,
hypre_StructMatrix *P,
HYPRE_Int P_stored_as_transpose,
HYPRE_Int cdir,
hypre_Index index,
hypre_Index stride )
{
hypre_StructGrid *grid = hypre_StructMatrixGrid(A);
hypre_BoxArrayArray *box_aa;
hypre_BoxArray *box_a;
hypre_Box *box;
hypre_CommInfo *comm_info;
hypre_CommPkg *comm_pkg;
hypre_CommHandle *comm_handle;
HYPRE_Int num_ghost[] = {0, 0, 0, 0, 0, 0};
HYPRE_Int i, j, s, dim;
if (hypre_StructMatrixConstantCoefficient(P) != 0)
{
return hypre_error_flag;
}
/* set num_ghost */
dim = hypre_StructGridDim(grid);
for (j = 0; j < dim; j++)
{
num_ghost[2*j] = 1;
num_ghost[2*j+1] = 1;
}
if (P_stored_as_transpose)
{
num_ghost[2*cdir] = 2;
num_ghost[2*cdir+1] = 2;
}
/* comm_info <-- From fine grid grown by num_ghost */
hypre_CreateCommInfoFromNumGhost(grid, num_ghost, &comm_info);
/* Project and map comm_info onto coarsened index space */
hypre_CommInfoProjectSend(comm_info, index, stride);
hypre_CommInfoProjectRecv(comm_info, index, stride);
for (s = 0; s < 3; s++)
{
switch(s)
{
case 0:
box_aa = hypre_CommInfoSendBoxes(comm_info);
hypre_SetIndex(hypre_CommInfoSendStride(comm_info), 1, 1, 1);
break;
case 1:
box_aa = hypre_CommInfoRecvBoxes(comm_info);
hypre_SetIndex(hypre_CommInfoRecvStride(comm_info), 1, 1, 1);
break;
case 2:
box_aa = hypre_CommInfoSendRBoxes(comm_info);
break;
}
hypre_ForBoxArrayI(j, box_aa)
{
box_a = hypre_BoxArrayArrayBoxArray(box_aa, j);
hypre_ForBoxI(i, box_a)
{
box = hypre_BoxArrayBox(box_a, i);
hypre_StructMapFineToCoarse(hypre_BoxIMin(box), index, stride,
hypre_BoxIMin(box));
hypre_StructMapFineToCoarse(hypre_BoxIMax(box), index, stride,
hypre_BoxIMax(box));
}
}
int
hypre_StructCoarsen( hypre_StructGrid *fgrid,
hypre_Index index,
hypre_Index stride,
int prune,
hypre_StructGrid **cgrid_ptr )
{
int ierr = 0;
hypre_StructGrid *cgrid;
MPI_Comm comm;
int dim;
hypre_BoxNeighbors *neighbors;
hypre_BoxArray *hood_boxes;
int num_hood;
int *hood_procs;
int *hood_ids;
int first_local;
int num_local;
int num_periodic;
int max_distance;
hypre_Box *bounding_box;
hypre_Index periodic;
MPI_Request *send_requests;
MPI_Status *send_status;
int *send_buffer;
int send_size;
MPI_Request *recv_requests;
MPI_Status *recv_status;
int **recv_buffers;
int *recv_sizes;
int my_rank;
int *send_procs;
int *recv_procs;
int num_sends;
int num_recvs;
hypre_BoxArray *new_hood_boxes;
int new_num_hood;
int *new_hood_procs;
int *new_hood_ids;
int new_first_local;
int new_num_local;
int new_num_periodic;
hypre_Box *box;
hypre_Box *local_box;
hypre_Box *neighbor_box;
hypre_Box *local_cbox;
hypre_Box *neighbor_cbox;
hypre_Index imin;
hypre_Index imax;
int alloc_size;
double perimeter_count, cperimeter_count;
/*double diff, distance, perimeter_count, cperimeter_count;*/
int *iarray;
int *jrecv;
int i, j, d, ilocal;
int data_id, min_id, jj;
/*-----------------------------------------
* Copy needed info from fgrid
*-----------------------------------------*/
comm = hypre_StructGridComm(fgrid);
dim = hypre_StructGridDim(fgrid);
neighbors = hypre_StructGridNeighbors(fgrid);
hood_boxes = hypre_BoxArrayDuplicate(hypre_BoxNeighborsBoxes(neighbors));
num_hood = hypre_BoxArraySize(hood_boxes);
iarray = hypre_BoxNeighborsProcs(neighbors);
hood_procs = hypre_TAlloc(int, num_hood);
for (i = 0; i < num_hood; i++)
{
hood_procs[i] = iarray[i];
}
iarray = hypre_BoxNeighborsIDs(neighbors);
hood_ids = hypre_TAlloc(int, num_hood);
for (i = 0; i < num_hood; i++)
{
hood_ids[i] = iarray[i];
}
first_local = hypre_BoxNeighborsFirstLocal(neighbors);
num_local = hypre_BoxNeighborsNumLocal(neighbors);
num_periodic = hypre_BoxNeighborsNumPeriodic(neighbors);
max_distance = hypre_StructGridMaxDistance(fgrid);
bounding_box = hypre_BoxDuplicate(hypre_StructGridBoundingBox(fgrid));
hypre_CopyIndex(hypre_StructGridPeriodic(fgrid), periodic);
MPI_Comm_rank(comm, &my_rank);
#if DEBUG
sprintf(filename, "zcoarsen.%05d", my_rank);
if ((file = fopen(filename, "a")) == NULL)
{
printf("Error: can't open output file %s\n", filename);
exit(1);
}
fprintf(file, "\n\n============================\n\n");
fprintf(file, "\n\n%d\n\n", debug_count++);
fprintf(file, "num_hood = %d\n", num_hood);
for (i = 0; i < num_hood; i++)
{
box = hypre_BoxArrayBox(hood_boxes, i);
fprintf(file, "(%d,%d,%d) X (%d,%d,%d) ; (%d,%d); %d\n",
hypre_BoxIMinX(box),hypre_BoxIMinY(box),hypre_BoxIMinZ(box),
hypre_BoxIMaxX(box),hypre_BoxIMaxY(box),hypre_BoxIMaxZ(box),
hood_procs[i], hood_ids[i], hypre_BoxVolume(box));
}
fprintf(file, "first_local = %d\n", first_local);
fprintf(file, "num_local = %d\n", num_local);
fprintf(file, "num_periodic = %d\n", num_periodic);
#endif
/*-----------------------------------------
* Coarsen bounding box
*-----------------------------------------*/
hypre_StructCoarsenBox(bounding_box, index, stride);
/*-----------------------------------------
* Coarsen neighborhood boxes & determine
* send / recv procs
*
* NOTE: Currently, this always communicates
* with all neighboring processes.
*-----------------------------------------*/
local_cbox = hypre_BoxCreate();
neighbor_cbox = hypre_BoxCreate();
num_recvs = 0;
num_sends = 0;
recv_procs = NULL;
send_procs = NULL;
for (i = 0; i < num_hood; i++)
{
if (hood_procs[i] != my_rank)
{
for (j = 0; j < num_local; j++)
{
ilocal = first_local + j;
local_box = hypre_BoxArrayBox(hood_boxes, ilocal);
neighbor_box = hypre_BoxArrayBox(hood_boxes, i);
/* coarsen boxes being considered */
hypre_CopyBox(local_box, local_cbox);
hypre_StructCoarsenBox(local_cbox, index, stride);
hypre_CopyBox(neighbor_box, neighbor_cbox);
hypre_StructCoarsenBox(neighbor_cbox, index, stride);
/*-----------------------
* Receive info?
*-----------------------*/
/* always communicate */
#if 0
perimeter_count = 0;
cperimeter_count = 0;
for (d = 0; d < 3; d++)
{
distance = max_distance;
diff = hypre_BoxIMaxD(neighbor_box, d) -
hypre_BoxIMaxD(local_box, d);
if (diff > 0)
{
distance = hypre_min(distance, diff);
}
diff = hypre_BoxIMinD(local_box, d) -
hypre_BoxIMinD(neighbor_box, d);
if (diff > 0)
{
distance = hypre_min(distance, diff);
}
if (distance < max_distance)
{
perimeter_count++;
}
distance = max_distance;
diff = hypre_BoxIMaxD(neighbor_cbox, d) -
hypre_BoxIMaxD(local_cbox, d);
if (diff > 0)
{
distance = hypre_min(distance, diff);
}
diff = hypre_BoxIMinD(local_cbox, d) -
hypre_BoxIMinD(neighbor_cbox, d);
if (diff > 0)
{
distance = hypre_min(distance, diff);
}
if (distance < max_distance)
{
cperimeter_count++;
}
}
#else
perimeter_count = 0;
cperimeter_count = 1;
#endif
if (cperimeter_count > perimeter_count)
{
if (num_recvs == 0)
{
recv_procs = hypre_TAlloc(int, num_hood);
recv_procs[num_recvs] = hood_procs[i];
num_recvs++;
}
else if (hood_procs[i] != recv_procs[num_recvs-1])
{
recv_procs[num_recvs] = hood_procs[i];
num_recvs++;
}
}
/*-----------------------
* Send info?
*-----------------------*/
/* always communicate */
#if 0
perimeter_count = 0;
cperimeter_count = 0;
for (d = 0; d < 3; d++)
{
distance = max_distance;
diff = hypre_BoxIMaxD(local_box, d) -
hypre_BoxIMaxD(neighbor_box, d);
if (diff > 0)
{
distance = hypre_min(distance, diff);
}
diff = hypre_BoxIMinD(neighbor_box, d) -
hypre_BoxIMinD(local_box, d);
if (diff > 0)
{
distance = hypre_min(distance, diff);
}
if (distance < max_distance)
{
perimeter_count++;
}
distance = max_distance;
diff = hypre_BoxIMaxD(local_cbox, d) -
hypre_BoxIMaxD(neighbor_cbox, d);
if (diff > 0)
{
distance = hypre_min(distance, diff);
}
diff = hypre_BoxIMinD(neighbor_cbox, d) -
hypre_BoxIMinD(local_cbox, d);
if (diff > 0)
{
distance = hypre_min(distance, diff);
}
if (distance < max_distance)
{
cperimeter_count++;
}
}
#else
perimeter_count = 0;
cperimeter_count = 1;
#endif
if (cperimeter_count > perimeter_count)
{
if (num_sends == 0)
{
send_procs = hypre_TAlloc(int, num_hood);
send_procs[num_sends] = hood_procs[i];
num_sends++;
}
else if (hood_procs[i] != send_procs[num_sends-1])
{
send_procs[num_sends] = hood_procs[i];
num_sends++;
}
}
