ContextMerge::ContextMerge() { setSortedInput(true); setUseMergedIntervals(true); setColumnOpsMethods(true); setExplicitBedOutput(true); //merge has no default columnOps the way map does, so we'll need to clear those. _keyListOps->setColumns(""); _keyListOps->setOperations(""); }
ContextGroupBy::ContextGroupBy() : _printFullCols(false), _ignoreCase(false) { setSortedInput(true); _noEnforceCoordSort = true; setColumnOpsMethods(true); setExplicitBedOutput(true); //For columnOps, groupBy has default operation sum but no default column, ///so we have to clear that. // _keyListOps->setColumns(""); }
bool ContextBase::handle_bed() { setExplicitBedOutput(true); markUsed(_i - _skipFirstArgs); return true; }