C++ (Cpp) Interval::chr Examples

Example #1

File: interval_test.cpp Project: lbergelson/gamgee

void check_interval(const Interval& actual, const Interval& truth) {
  BOOST_CHECK_EQUAL(actual.chr(), truth.chr());
  BOOST_CHECK_EQUAL(actual.start(), truth.start());
  BOOST_CHECK_EQUAL(actual.stop(), truth.stop());
}

Example #2

File: reference_map.cpp Project: broadinstitute/gamgee

string ReferenceMap::get_sequence(const Interval& interval, const bool reverse_strand) const {
  const auto& seq = this->at(interval.chr());
  auto result = seq.substr(interval.start()-1, interval.size());
  return reverse_strand ? utils::complement(result) : result;
}