C++ (Cpp) PrecursorIonSelectionPreprocessing::getWeight Examples

Example #1

File: PrecursorIonSelectionPreprocessing_test.cpp Project: OpenMS/OpenMS

START_SECTION(void dbPreprocessing(String db_path, bool save=true))
	std::map<String,std::vector<double> > prot_map = ptr->getProtMasses();
	TEST_EQUAL(prot_map.size(), 3)
END_SECTION

START_SECTION(double getWeight(double mass))
  double w = ptr->getWeight(147.113);
  TEST_REAL_SIMILAR(w,1)
END_SECTION

START_SECTION(void loadPreprocessing())
	PrecursorIonSelectionPreprocessing ldb;
  ldb.setParameters(param);
  ldb.loadPreprocessing();
  TEST_EQUAL(ldb.getProtMasses().size(),3)
  double w = ldb.getWeight(147.113);
  TEST_REAL_SIMILAR(w,1)

	std::vector<double> pep_masses_l = ldb.getMasses("P01008");
  std::vector<double> pep_masses = ptr->getMasses("P01008");
  TEST_EQUAL(pep_masses_l.size(),pep_masses.size())
	TEST_REAL_SIMILAR(pep_masses_l[0],pep_masses[0])
END_SECTION

PrecursorIonSelectionPreprocessing rt_pt_pp;
rt_pt_pp.setParameters(param);
rt_pt_pp.dbPreprocessing(OPENMS_GET_TEST_DATA_PATH("PrecursorIonSelectionPreprocessing_db.fasta"),
												 OPENMS_GET_TEST_DATA_PATH("PrecursorIonSelectionPreprocessing_rt.model"),
												 OPENMS_GET_TEST_DATA_PATH("DetectabilitySimulation.svm"),false);

START_SECTION(void dbPreprocessing(String db_path,String rt_model_path,String dt_model_path,bool save=true))

Example #2

File: PrecursorIonSelectionPreprocessing_test.C Project: BioITer/OpenMS

START_SECTION(void dbPreprocessing(String db_path, bool save=true))
	std::map<String,std::vector<DoubleReal> > prot_map = ptr->getProtMasses();
	TEST_EQUAL(prot_map.size(), 3)
END_SECTION

START_SECTION(DoubleReal getWeight(DoubleReal mass))
  DoubleReal w = ptr->getWeight(147.113);
  TEST_REAL_SIMILAR(w,1)
END_SECTION

START_SECTION(void loadPreprocessing())
	PrecursorIonSelectionPreprocessing ldb;
  ldb.setParameters(param);
  ldb.loadPreprocessing();
  TEST_EQUAL(ldb.getProtMasses().size(),3)
  DoubleReal w = ldb.getWeight(147.113);
  TEST_REAL_SIMILAR(w,1)

	std::vector<DoubleReal> pep_masses_l = ldb.getMasses("P01008");
  std::vector<DoubleReal> pep_masses = ptr->getMasses("P01008");
  TEST_EQUAL(pep_masses_l.size(),pep_masses.size())
	TEST_REAL_SIMILAR(pep_masses_l[0],pep_masses[0])
END_SECTION

PrecursorIonSelectionPreprocessing rt_pt_pp;
rt_pt_pp.setParameters(param);
rt_pt_pp.dbPreprocessing(OPENMS_GET_TEST_DATA_PATH("PrecursorIonSelectionPreprocessing_db.fasta"),
												 OPENMS_GET_TEST_DATA_PATH("PrecursorIonSelectionPreprocessing_rt.model"),
												 OPENMS_GET_TEST_DATA_PATH("DetectabilitySimulation.svm"),false);

START_SECTION(void dbPreprocessing(String db_path,String rt_model_path,String dt_model_path,bool save=true))