START_SECTION(void dbPreprocessing(String db_path, bool save=true))
std::map<String,std::vector<double> > prot_map = ptr->getProtMasses();
TEST_EQUAL(prot_map.size(), 3)
END_SECTION
START_SECTION(double getWeight(double mass))
double w = ptr->getWeight(147.113);
TEST_REAL_SIMILAR(w,1)
END_SECTION
START_SECTION(void loadPreprocessing())
PrecursorIonSelectionPreprocessing ldb;
ldb.setParameters(param);
ldb.loadPreprocessing();
TEST_EQUAL(ldb.getProtMasses().size(),3)
double w = ldb.getWeight(147.113);
TEST_REAL_SIMILAR(w,1)
std::vector<double> pep_masses_l = ldb.getMasses("P01008");
std::vector<double> pep_masses = ptr->getMasses("P01008");
TEST_EQUAL(pep_masses_l.size(),pep_masses.size())
TEST_REAL_SIMILAR(pep_masses_l[0],pep_masses[0])
END_SECTION
PrecursorIonSelectionPreprocessing rt_pt_pp;
rt_pt_pp.setParameters(param);
rt_pt_pp.dbPreprocessing(OPENMS_GET_TEST_DATA_PATH("PrecursorIonSelectionPreprocessing_db.fasta"),
OPENMS_GET_TEST_DATA_PATH("PrecursorIonSelectionPreprocessing_rt.model"),
OPENMS_GET_TEST_DATA_PATH("DetectabilitySimulation.svm"),false);
START_SECTION(void dbPreprocessing(String db_path,String rt_model_path,String dt_model_path,bool save=true))
START_SECTION(void dbPreprocessing(String db_path, bool save=true))
std::map<String,std::vector<DoubleReal> > prot_map = ptr->getProtMasses();
TEST_EQUAL(prot_map.size(), 3)
END_SECTION
START_SECTION(DoubleReal getWeight(DoubleReal mass))
DoubleReal w = ptr->getWeight(147.113);
TEST_REAL_SIMILAR(w,1)
END_SECTION
START_SECTION(void loadPreprocessing())
PrecursorIonSelectionPreprocessing ldb;
ldb.setParameters(param);
ldb.loadPreprocessing();
TEST_EQUAL(ldb.getProtMasses().size(),3)
DoubleReal w = ldb.getWeight(147.113);
TEST_REAL_SIMILAR(w,1)
std::vector<DoubleReal> pep_masses_l = ldb.getMasses("P01008");
std::vector<DoubleReal> pep_masses = ptr->getMasses("P01008");
TEST_EQUAL(pep_masses_l.size(),pep_masses.size())
TEST_REAL_SIMILAR(pep_masses_l[0],pep_masses[0])
END_SECTION
PrecursorIonSelectionPreprocessing rt_pt_pp;
rt_pt_pp.setParameters(param);
rt_pt_pp.dbPreprocessing(OPENMS_GET_TEST_DATA_PATH("PrecursorIonSelectionPreprocessing_db.fasta"),
OPENMS_GET_TEST_DATA_PATH("PrecursorIonSelectionPreprocessing_rt.model"),
OPENMS_GET_TEST_DATA_PATH("DetectabilitySimulation.svm"),false);
START_SECTION(void dbPreprocessing(String db_path,String rt_model_path,String dt_model_path,bool save=true))