C++ (Cpp) Reaction::toSBML Examples

Example #1

File: TestWriteL3SBML.cpp Project: sn248/Rcppsbml

END_TEST


START_TEST (test_WriteL3SBML_Reaction_compartment)
{
  const char* expected = "<reaction id=\"r\" reversible=\"false\""
    " fast=\"true\" compartment=\"c\"/>";

  const char* expected1 = "<reaction id=\"r\" reversible=\"false\""
    " fast=\"true\"/>";

  Reaction *r = D->createModel()->createReaction();
  r->setId("r");
  r->setReversible(false);
  r->setFast(true);
  r->setCompartment("c");

  char* sbml = r->toSBML();
  fail_unless( equals(expected, sbml) );
  safe_free(sbml);

  r->unsetCompartment();

  sbml = r->toSBML();
  fail_unless( equals(expected1, sbml) );
  safe_free(sbml);
}

Example #2

File: TestWriteL3SBML.cpp Project: sn248/Rcppsbml

END_TEST


START_TEST (test_WriteL3SBML_Reaction_full)
{
  const char* expected = 
    "<reaction id=\"v1\" reversible=\"true\" fast=\"false\">\n"
    "  <listOfReactants>\n"
    "    <speciesReference species=\"x0\"/>\n"
    "  </listOfReactants>\n"
    "  <listOfProducts>\n"
    "    <speciesReference species=\"s1\"/>\n"
    "  </listOfProducts>\n"
    "  <listOfModifiers>\n"
    "    <modifierSpeciesReference species=\"m1\"/>\n"
    "  </listOfModifiers>\n"
    "  <kineticLaw>\n"
    "    <math xmlns=\"http://www.w3.org/1998/Math/MathML\">\n"
    "      <apply>\n"
    "        <divide/>\n"
    "        <apply>\n"
    "          <times/>\n"
    "          <ci> vm </ci>\n"
    "          <ci> s1 </ci>\n"
    "        </apply>\n"
    "        <apply>\n"
    "          <plus/>\n"
    "          <ci> km </ci>\n"
    "          <ci> s1 </ci>\n"
    "        </apply>\n"
    "      </apply>\n"
    "    </math>\n"
    "  </kineticLaw>\n"
    "</reaction>";


  D->createModel();

  Reaction* r = D->getModel()->createReaction();

  r->setId("v1");
  r->setReversible(true);
  r->setFast(false);

  r->createReactant()->setSpecies("x0");
  r->createProduct ()->setSpecies("s1");
  r->createModifier()->setSpecies("m1");

  r->createKineticLaw()->setFormula("(vm * s1)/(km + s1)");

  char* sbml = r->toSBML();
  fail_unless( equals(expected, sbml) );
  safe_free(sbml);
}