bool PropertyBag::get(const string &key, ivec2 &vec, size_t instance) const {
string _s;
if (!get(key, _s, instance)) {
return false;
}
string s = toLowerCase(_s);
boost::char_separator<char> delimeters("(,)\t\n");
boost::tokenizer<boost::char_separator<char> > tokens(s, delimeters);
boost::tokenizer<boost::char_separator<char> >::const_iterator i = tokens.begin();
if (i == tokens.end())
return false;
if (string(*i) != "&ivec2")
return false;
vec.x = stoi(*(++i));
vec.y = stoi(*(++i));
return true;
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
int DxReader::readFile()
{
std::stringstream ss;
VoxelDataContainer* m = getVoxelDataContainer();
if (NULL == m)
{
ss.clear();
ss << "DataContainer Pointer was NULL and Must be valid." << __FILE__ << "("<<__LINE__<<")";
addErrorMessage(getHumanLabel(), ss.str(), -5);
setErrorCondition(-5);
return -1;
}
std::string delimeters(", ;\t"); /* delimeters to split the data */
std::vector<std::string> tokens; /* vector to store the split data */
int error, spin; /* dummy variables */
bool finished_header, finished_data;
finished_header = true;
finished_data = false;
size_t index = 0;
size_t totalPoints = m->getTotalPoints();
// Remove the array that we are about to create first as a 'datacheck()' was called from the super class's 'execute'
// method which is performed before this function. This will cause an error -501 because the array with the name
// m_GrainIdsArrayName already exists but of size 1, not the size we are going to read. So we get rid of the array
m->removeCellData(m_GrainIdsArrayName);
// Rerun the data check in order to allocate the array to store the data from the .dx file.
// dataCheck(false, totalPoints, m->getNumFieldTuples(), m->getNumEnsembleTuples());
CREATE_NON_PREREQ_DATA(m, DREAM3D, CellData, GrainIds, ss, int32_t, Int32ArrayType, 0, totalPoints, 1)
if (getErrorCondition() < 0)
{
m_InStream.close();
return -1;
}
for (std::string line; std::getline(m_InStream, line);)
{
// Get the remaining lines of the header and ignore
tokens.clear();
error = 0;
tokenize(line, tokens, delimeters);
size_t total = m->getTotalPoints();
if( index == total || ( finished_header && tokens.size() != 0 && tokens[0] == "attribute") )
{
finished_data = true;
}
// Allocate the DataArray at this point:
if(finished_header && !finished_data)
{
for (size_t in_spins = 0; in_spins < tokens.size(); in_spins++)
{
error += sscanf(tokens[in_spins].c_str(), "%d", &spin);
m_GrainIds[index] = spin;
++index;
}
}
}
if(index != static_cast<size_t>(m->getTotalPoints()))
{
ss.clear();
ss << "ERROR: data size does not match header dimensions" << std::endl;
ss << "\t" << index << "\t" << m->getTotalPoints() << std::endl;
setErrorCondition(-495);
addErrorMessage(getHumanLabel(), ss.str(), getErrorCondition());
m_InStream.close();
return getErrorCondition();
}
tokens.clear();
m_InStream.close();
// Find the unique set of grain ids
// std::set<int32_t> grainIdSet;
// for (int64_t i = 0; i < totalPoints; ++i)
// {
// grainIdSet.insert(m_GrainIds[i]);
// }
// for (std::set<int32_t>::iterator iter = grainIdSet.begin(); iter != grainIdSet.end(); ++iter )
// {
// std::cout << "Grain ID: " << (*iter) << std::endl;
// }
notifyStatusMessage("Complete");
return 0;
}
//-----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
int DxReader::readHeader()
{
VoxelDataContainer* m = getVoxelDataContainer();
std::stringstream ss;
int error = 0;
std::string line;
std::string delimeters(", ;\t"); /* delimeters to split the data */
std::vector<std::string> tokens; /* vector to store the split data */
getline(m_InStream, line, '\n');
tokenize(line, tokens, delimeters);
// Process the header information and look for the std::string "counts"
// Then read the data size after that
size_t pos1 = 0;
while (pos1 == 0)
{ // continue until we find the keyword
for (size_t i = 0; i < tokens.size(); i++)
{
if(tokens[i] == "counts")
{
pos1 = i;
}
}
// Read the next line of the header if we did not find the keyword
// in the line
if(pos1 == 0)
{
tokens.clear();
getline(m_InStream, line, '\n');
tokenize(line, tokens, delimeters);
if(tokens.size() == 20)
{
ss.clear();
ss << "ERROR: Unable to read data dimensions from the header" << std::endl;
addErrorMessage(getHumanLabel(), ss.str(), -7);
setErrorCondition(-499);
m_InStream.close();
return -499;
}
}
}
int nx = 0;
int ny = 0;
int nz = 0;
if(pos1 != 0)
{
error = 0;
error += sscanf(tokens[pos1 + 1].c_str(), "%d", &nz);
error += sscanf(tokens[pos1 + 2].c_str(), "%d", &ny);
error += sscanf(tokens[pos1 + 3].c_str(), "%d", &nx);
tokens.clear();
// The dimensions listed in the DX file are always one greater
// than the actual dimensions
nx--;
ny--;
nz--;
}
// std::cout << "INFO: DX data dimensions: " << std::endl;
// std::cout << "nz= " << nz << std::endl;
// std::cout << "ny= " << ny << std::endl;
// std::cout << "nx= " << nx << std::endl;
//The DX file has a unique format of 20 entries on each line. I have
//no idea who initiated this insanity but I am about to perpetuate
//it.
//
//The most simple thing to do is to read the entire dataset into one
//long vector and then read that vector to assign values to the grid
// ADR: 6 Sep 08; time to make the input much more general!
// equivalent to list-direcvted input in Fortran, actually !!
pos1 = 0;
while (pos1 == 0)
{ // continue until we find the keyword
for (size_t i = 0; i < tokens.size(); i++)
{
if(tokens[i] == "items")
{
pos1 = i;
}
}
// Read the next line of the header if we did not find the keyword
// in the line
if(pos1 == 0)
{
tokens.clear();
getline(m_InStream, line, '\n');
tokenize(line, tokens, delimeters);
if(tokens.size() == 20)
{
ss.clear();
ss << "ERROR: Unable to locate the last header line" << std::endl;
addErrorMessage(getHumanLabel(), ss.str(), -8);
setErrorCondition(-496);
m_InStream.close();
return -496;
}
}
} // when we get here, we are looking at data
int points = 0;
if(pos1 != 0)
{
error = 0;
error += sscanf(tokens[pos1 + 1].c_str(), "%d", &points);
tokens.clear();
}
m->setDimensions(nx, ny, nz);
// std::cout << "Compare no. points " << points << " with x*y*z: " << nx * ny * nz << std::endl;
return error;
}
/**
*
* @param FileName
* @param data
* @param nx X Dimension
* @param ny Y Dimension
* @param nz Z Dimension
*/
int ReadPHFile(std::string FileName, std::vector<int> &data, int &nx, int &ny, int &nz)
{
std::string line;
line.resize(1024);
std::string delimeters(", ;\t"); /* delimeters to split the data */
std::vector<std::string> tokens; /* vector to store the split data */
//std::vector<int> data; /* vector to store the data */
int error, spin; /* dummy variables */
//int nx, ny, nz;
std::ifstream InFile;
InFile.open(FileName.c_str(), std::ios_base::binary);
if (!InFile)
{
std::cout << "Failed to open: " << FileName << std::endl;
return -1;
}
getline(InFile, line);
tokenize(line, tokens, delimeters);
// Process the header information from the PH file.
error = 0;
error += sscanf(tokens[0].c_str(), "%d", &nx);
error += sscanf(tokens[1].c_str(), "%d", &ny);
error += sscanf(tokens[2].c_str(), "%d", &nz);
if (error < 0)
{
std::cout << "Error parsing Dimensions from ph file. The line that is being parsed was \n'" <<
line << "'" << std::endl;
return -1;
}
tokens.clear();
// cout << "INFO: PH file grid size: " << nx << "\t" << ny << "\t" << nz << endl;;
//MCgrid3D* grid = new grid(nx,ny,nz);
// Get the remaining two lines of the header and ignore
getline(InFile, line, '\n');
getline(InFile, line, '\n');
//The PH file has a unique format of 20 entries on each line. I have
//now idea who initiated this insanity but I am about to propetuate
//it.
//
//The most simple thing todo is to read the entire dataset into one
//long vector and then read that vector to assign values to the grid
while (getline(InFile, line, '\n') != NULL)
{
tokens.clear();
error = 0;
tokenize(line, tokens, delimeters);
// cout << line << endl;
// for(int i=0; i < tokens.size(); i++ )
// cout << setw(6) << tokens[i];
// cout << endl;
for (size_t in_spins = 0; in_spins < tokens.size(); in_spins++)
{
error += sscanf(tokens[in_spins].c_str(), "%d", &spin);
data.push_back(spin);
}
// if(error != 20)
// {
// cout << "ERROR: Invalid number of line entries in PH file" << endl;
// }
}
tokens.clear();
InFile.close();
return 0;
}