Exemple #1
0
void gt_block_print(const GtBlock* block)
{
  GtUword i;
  gt_assert(block);
  for (i=0;i<gt_array_size(block->elements);i++)
  {
    GtElement *elem;
    elem = gt_element_ref(*(GtElement**) gt_array_get(block->elements, i));
    gt_assert(elem);
    GtRange r = gt_element_get_range(elem);
    printf("%s\t"GT_WU"-"GT_WU"\n", gt_element_get_type(elem),
                           r.start,
                           r.end);
  }
}
Exemple #2
0
bool gt_block_has_only_one_fullsize_element(const GtBlock *block)
{
  bool ret = false;
  GtUword bsize;
  gt_assert(block);
  bsize = gt_array_size(block->elements);
  if (bsize == 1) {
    GtRange elem_range, block_range;
    gt_assert(*(GtElement**) gt_array_get(block->elements, 0) ==
              *(GtElement**) gt_array_get(block->elements, bsize-1));
    elem_range = gt_element_get_range(*(GtElement**)
                                             gt_array_get(block->elements, 0));
    block_range = gt_block_get_range(block);
    ret = (gt_range_compare(&block_range, &elem_range) == 0);
  }
  return ret;
}
int gt_canvas_cairo_visit_element(GtCanvas *canvas, GtElement *elem,
                                  GtError *err)
{
  int had_err = 0, arrow_status = ARROW_NONE;
  GtRange elem_range = gt_element_get_range(elem);
  GtDrawingRange draw_range;
  double elem_start = GT_UNDEF_DOUBLE,
         elem_width = GT_UNDEF_DOUBLE,
         stroke_width = STROKE_WIDTH_DEFAULT,
         bar_height = BAR_HEIGHT_DEFAULT,
         arrow_width = ARROW_WIDTH_DEFAULT;
  GtColor elem_color, grey, fill_color;
  const char *type;
  GtStyleQueryStatus rval;
  GtStr *style;
  GtStrand strand = gt_element_get_strand(elem);

  gt_assert(canvas && elem);

  /* This shouldn't happen. */
  if (!gt_range_overlap(&elem_range, &canvas->pvt->viewrange))
    return -1;

  type = gt_element_get_type(elem);
  grey.red = grey.green = grey.blue = .85;
  grey.alpha = 0.5;

  /* get default or image-wide bar height */
  if (gt_style_get_num(canvas->pvt->sty, "format", "bar_height", &bar_height,
                       NULL, err) == GT_STYLE_QUERY_ERROR) {
    return -1;
  }
  /* try to get type-specific bar height */
  if (gt_style_get_num_with_track(canvas->pvt->sty, type, "bar_height",
                       &bar_height,
                       gt_element_get_node_ref(elem),
                       gt_track_get_title(canvas->pvt->current_track),
                       err) == GT_STYLE_QUERY_ERROR) {
    return -1;
  }
  /* get default or image-wide arrow width */
  if (gt_style_get_num(canvas->pvt->sty, "format", "arrow_width", &arrow_width,
                        NULL, err)== GT_STYLE_QUERY_ERROR) {
    return -1;
  }
  /* try to get type-specific arrow width */
  if (gt_style_get_num_with_track(canvas->pvt->sty, type, "arrow_width",
                       &arrow_width,
                       gt_element_get_node_ref(elem),
                       gt_track_get_title(canvas->pvt->current_track),
                       err) == GT_STYLE_QUERY_ERROR) {
    return -1;
  }

  if ((strand == GT_STRAND_REVERSE || strand == GT_STRAND_BOTH)
         /*&& delem == gt_dlist_first(elems)*/)
    arrow_status = ARROW_LEFT;
  if ((strand == GT_STRAND_FORWARD || strand == GT_STRAND_BOTH)
         /*&& gt_dlistelem_next(delem) == NULL*/)
    arrow_status = (arrow_status == ARROW_LEFT ? ARROW_BOTH : ARROW_RIGHT);

  gt_log_log("processing element from %lu to %lu, strand %d\n",
             elem_range.start, elem_range.end, (int) strand);

  draw_range = gt_coords_calc_generic_range(elem_range, canvas->pvt->viewrange);
  draw_range.start *= (canvas->pvt->width-2*canvas->pvt->margins);
  draw_range.end *= (canvas->pvt->width-2*canvas->pvt->margins);
  elem_start = draw_range.start + canvas->pvt->margins;
  elem_width = draw_range.end - draw_range.start;
  gt_assert(elem_start != GT_UNDEF_DOUBLE && elem_width != GT_UNDEF_DOUBLE);

  if (gt_element_is_marked(elem)) {
    if (gt_style_get_color_with_track(canvas->pvt->sty, type, "stroke_marked",
                           &elem_color, gt_element_get_node_ref(elem),
                           gt_track_get_title(canvas->pvt->current_track),
                           err) == GT_STYLE_QUERY_ERROR) {
      return -1;
    }
    if (gt_style_get_num_with_track(canvas->pvt->sty, "format",
                          "stroke_marked_width",
                          &stroke_width, gt_element_get_node_ref(elem),
                          gt_track_get_title(canvas->pvt->current_track),
                          err) == GT_STYLE_QUERY_ERROR) {
    return -1;
    }
  }
  else {
    if (gt_style_get_color_with_track(canvas->pvt->sty, type, "stroke",
                              &elem_color,
                              gt_element_get_node_ref(elem),
                              gt_track_get_title(canvas->pvt->current_track),
                              err) == GT_STYLE_QUERY_ERROR) {
      return -1;
    }
    if (gt_style_get_num_with_track(canvas->pvt->sty, "format", "stroke_width",
                         &stroke_width,
                         gt_element_get_node_ref(elem),
                         gt_track_get_title(canvas->pvt->current_track),
                         err) == GT_STYLE_QUERY_ERROR) {
      return -1;
    }
    if (gt_style_get_num_with_track(canvas->pvt->sty, type, "stroke_width",
                         &stroke_width,
                         gt_element_get_node_ref(elem),
                         gt_track_get_title(canvas->pvt->current_track),
                         err) == GT_STYLE_QUERY_ERROR) {
      return -1;
    }
  }
  if (gt_style_get_color_with_track(canvas->pvt->sty, type, "fill",
                                 &fill_color,
                                 gt_element_get_node_ref(elem),
                                 gt_track_get_title(canvas->pvt->current_track),
                                 err) == GT_STYLE_QUERY_ERROR) {
    return -1;
  }

  if (canvas->pvt->bt &&
          gt_double_smaller_double(draw_range.end-draw_range.start, 1.1))
  {
    if ((unsigned long) draw_range.start > gt_bittab_size(canvas->pvt->bt))
      return had_err;
    if (gt_bittab_bit_is_set(canvas->pvt->bt, (unsigned long) draw_range.start))
      return had_err;
    gt_graphics_draw_vertical_line(canvas->pvt->g,
                                   elem_start,
                                   canvas->pvt->y - bar_height/2,
                                   elem_color,
                                   bar_height,
                                   stroke_width);
    gt_bittab_set_bit(canvas->pvt->bt, (unsigned long) draw_range.start);
  }

  /* register coordinates in GtImageInfo object if available */
  if (canvas->pvt->ii)
  {
    GtRecMap *rm = gt_rec_map_new(elem_start, canvas->pvt->y - bar_height/2,
                                  elem_start+elem_width,
                                  canvas->pvt->y+bar_height/2,
                                  (GtFeatureNode*)
                                    gt_element_get_node_ref(elem));
    gt_image_info_add_rec_map(canvas->pvt->ii, rm);
    }

  if (canvas->pvt->bt && draw_range.end-draw_range.start <= 1.1)
  {
    return had_err;
  }

  gt_log_log("drawing element from %f to %f, arrow status: %d",
             draw_range.start, draw_range.end, arrow_status);

  /* draw each element according to style set in the style */
  style = gt_str_new();
  rval = gt_style_get_str_with_track(canvas->pvt->sty, type, "style", style,
                          gt_element_get_node_ref(elem),
                          gt_track_get_title(canvas->pvt->current_track),
                          err);
  switch (rval) {
    case GT_STYLE_QUERY_NOT_SET:
      gt_str_set(style, "box");    /* default style */
      break;
    case GT_STYLE_QUERY_ERROR:
      gt_str_delete(style);
      gt_assert(gt_error_is_set(err));
      return -1;
    default:
      break;
  }

  if (strcmp(gt_str_get(style), "box") == 0)
  {
    gt_graphics_draw_box(canvas->pvt->g,
                         elem_start,
                         canvas->pvt->y - bar_height/2,
                         elem_width,
                         bar_height,
                         fill_color,
                         arrow_status,
                         arrow_width,
                         stroke_width,
                         elem_color,
                         false);
  }
  else if (strcmp(gt_str_get(style), "rectangle") == 0)
  {
    gt_graphics_draw_box(canvas->pvt->g,
                         elem_start,
                         canvas->pvt->y - bar_height/2,
                         elem_width,
                         bar_height,
                         fill_color,
                         ARROW_NONE,
                         arrow_width,
                         stroke_width,
                         elem_color,
                         false);
  }
  else if (strcmp(gt_str_get(style), "caret") == 0)
  {
    gt_graphics_draw_caret(canvas->pvt->g,
                           elem_start,
                           canvas->pvt->y - bar_height/2,
                           elem_width,
                           bar_height,
                           ARROW_NONE,
                           arrow_width,
                           stroke_width,
                           elem_color);
  }
  else if (strcmp(gt_str_get(style), "dashes") == 0)
  {
    gt_graphics_draw_dashes(canvas->pvt->g,
                            elem_start,
                            canvas->pvt->y - bar_height/2,
                            elem_width,
                            bar_height,
                            arrow_status,
                            arrow_width,
                            stroke_width,
                            elem_color);
  }
  else if (strcmp(gt_str_get(style), "line") == 0)
  {
    gt_graphics_draw_horizontal_line(canvas->pvt->g,
                                     elem_start,
                                     canvas->pvt->y - bar_height/2,
                                     elem_color,
                                     elem_width,
                                     1.0);
  }
  else
  {
     gt_graphics_draw_box(canvas->pvt->g,
                          elem_start,
                          canvas->pvt->y - bar_height/2,
                          elem_width,
                          bar_height,
                          fill_color,
                          arrow_status,
                          arrow_width,
                          stroke_width,
                          elem_color,
                          false);
  }
  gt_str_delete(style);

  /* draw arrowheads at clipped margins */
  if (draw_range.clip == CLIPPED_LEFT || draw_range.clip == CLIPPED_BOTH)
      gt_graphics_draw_arrowhead(canvas->pvt->g,
                                 canvas->pvt->margins - 10,
                                 canvas->pvt->y - 4,
                                 grey,
                                 ARROW_LEFT);
  if (draw_range.clip == CLIPPED_RIGHT || draw_range.clip == CLIPPED_BOTH)
      gt_graphics_draw_arrowhead(canvas->pvt->g,
                                 canvas->pvt->width-canvas->pvt->margins + 10,
                                 canvas->pvt->y - 4,
                                 grey,
                                 ARROW_RIGHT);
  return had_err;
}