C++ (Cpp) gt_sam_alignment_new Exemples

Exemple #1

Fichier : sam_alignment.c Projet : oeigenbrod/genometools

GtSamAlignment *gt_sam_alignment_clone(GtSamAlignment *sam_alignment)
{
  GtSamAlignment *clone;
  gt_assert(sam_alignment != NULL);
  clone = gt_sam_alignment_new(sam_alignment->alphabet);
  (void)bam_copy1(clone->s_alignment, sam_alignment->s_alignment);
  clone->rightmost = sam_alignment->rightmost;
  return clone;
}

Exemple #2

Fichier : samfile_iterator.c Projet : 9beckert/TIR

int gt_samfile_iterator_next(GtSamfileIterator *s_iter,
                             GtSamAlignment **s_alignment)
{
  int read;
  if (s_iter->current_alignment == NULL)
    s_iter->current_alignment = gt_sam_alignment_new(s_iter->alphabet);
  read = samread(s_iter->samfile, s_iter->current_alignment->s_alignment);
  if (read > 0) {
    *s_alignment = s_iter->current_alignment;
    return read;
  }
  else {
    *s_alignment = NULL;
    return read;
  }
}