//
// Main
//
int assembleMain(int argc, char** argv)
{
Timer* pTimer = new Timer("sga assemble");
parseAssembleOptions(argc, argv);
assemble();
delete pTimer;
return 0;
}
//
// Main
//
int assembleMain(int argc, char** argv)
{
Timer* pTimer = new Timer("StriDe assembly");
parseAssembleOptions(argc, argv);
std::cout << "\n#--- Parameters ---#\n";
std::cout << "Kmer Size : " << opt::kmerLength << std::endl;
std::cout << "Kmer Threshold : " << opt::kmerThreshold << std::endl;
std::cout << "Original Read Length : " << opt::readLength << std::endl;
std::cout << "Maximum Chimera Length : " << opt::maxChimeraLength << std::endl;
std::cout << "Reliable Overlap Length: " << opt::credibleOverlapLength <<std::endl;
std::cout << "Insert Size : " << opt::insertSize << std::endl;
assemble();
delete pTimer;
return 0;
}
