void SplineSeg<D> :: GetPoints (int n, ARRAY<Point<D> > & points)
{
  points.SetSize (n);
  if (n >= 2)
    for (int i = 0; i < n; i++)
      points[i] = GetPoint(double(i) / (n-1));
}
Exemple #2
0
void Primitive :: 
GetTangentialVecSurfaceIndices (const Point<3> & p, const Vec<3> & v,
				ARRAY<int> & surfind, double eps) const
{
  cout << "get tangvecsurfind not implemented" << endl;
  surfind.SetSize (0);
}
Exemple #3
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void Intersection (const FlatArray<T> & in1, const FlatArray<T> & in2, const FlatArray<T> & in3,
		   ARRAY<T> & out)
{
  out.SetSize(0);
  for(int i=0; i<in1.Size(); i++)
    if(in2.Contains(in1[i]) && in3.Contains(in1[i]))
      out.Append(in1[i]);
}
void CHotKeys::GetKeys(ARRAY& keys)
{
	INT_PTR count = GetSize();
	keys.SetSize(count);
	for(int i=0; i < count; i++)
	{
		keys[i] = ElementAt(i)->GetKey();
	}
}
Exemple #5
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void QickSort (const ARRAY<double> & values,
	       ARRAY<int> & order)
{
  int i, n = values.Size();
  order.SetSize (n);
  for (i = 1; i <= n; i++)
    order.Elem(i) = i;

  QickSortRec (values, order, 1, order.Size());
}
void LineSeg<D> :: LineIntersections (const double a, const double b, const double c,
				      ARRAY < Point<D> > & points, const double eps) const
{
  points.SetSize(0);

  double denom = -a*p2(0)+a*p1(0)-b*p2(1)+b*p1(1);
  if(fabs(denom) < 1e-20)
    return;

  double t = (a*p1(0)+b*p1(1)+c)/denom;
  if((t > -eps) && (t <  1.+eps))
    points.Append(GetPoint(t));
}
Exemple #7
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void Sort (const ARRAY<double> & values,
	   ARRAY<int> & order)
{
  int n = values.Size();
  int i, j;

  order.SetSize (n);

  for (i = 1; i <= n; i++)
    order.Elem(i) = i;
  for (i = 1; i <= n-1; i++)
    for (j = 1; j <= n-1; j++)
      if (values.Get(order.Elem(j)) > values.Get(order.Elem(j+1)))
	{
	  Swap (order.Elem(j), order.Elem(j+1));
	}
}
Exemple #8
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void Polyhedra :: GetPolySurfs(ARRAY < ARRAY<int> * > & polysurfs)
{
  int maxnum = -1;
  
  for(int i = 0; i<faces.Size(); i++)
    {
      if(faces[i].inputnr > maxnum)
	maxnum = faces[i].inputnr;
    }
  
  polysurfs.SetSize(maxnum+1);
  for(int i=0; i<polysurfs.Size(); i++)
    polysurfs[i] = new ARRAY<int>;

  for(int i = 0; i<faces.Size(); i++)
    polysurfs[faces[i].inputnr]->Append(faces[i].planenr);
}
void SplineSeg3<D> :: LineIntersections (const double a, const double b, const double c,
					 ARRAY < Point<D> > & points, const double eps) const
{
  points.SetSize(0);

  double t;

  const double c1 = a*p1(0) - sqrt(2.)*a*p2(0) + a*p3(0) 
    + b*p1(1) - sqrt(2.)*b*p2(1) + b*p3(1) 
    + (2.-sqrt(2.))*c;
  const double c2 = -2.*a*p1(0) + sqrt(2.)*a*p2(0) -2.*b*p1(1) + sqrt(2.)*b*p2(1) + (sqrt(2.)-2.)*c;
  const double c3 = a*p1(0) + b*p1(1) + c;

  if(fabs(c1) < 1e-20)
    {
      if(fabs(c2) < 1e-20)
	return;

      t = -c3/c2;
      if((t > -eps) && (t < 1.+eps))
	points.Append(GetPoint(t));
      return;
    }

  const double discr = c2*c2-4.*c1*c3;

  if(discr < 0)
    return;

  if(fabs(discr/(c1*c1)) < 1e-14)
    {
      t = -0.5*c2/c1;
      if((t > -eps) && (t < 1.+eps))
	points.Append(GetPoint(t));
      return;
    }

  t = (-c2 + sqrt(discr))/(2.*c1);
  if((t > -eps) && (t < 1.+eps))
    points.Append(GetPoint(t));

  t = (-c2 - sqrt(discr))/(2.*c1);
  if((t > -eps) && (t < 1.+eps))
    points.Append(GetPoint(t));
}
void CircleSeg<D> :: LineIntersections (const double a, const double b, const double c,
					ARRAY < Point<D> > & points, const double eps) const
{
  points.SetSize(0);

  double px=0,py=0;

  if(fabs(b) > 1e-20)
    py = -c/b;
  else
    px = -c/a;

  const double c1 = a*a + b*b;
  const double c2 = 2. * ( a*(py-pm(1)) - b*(px-pm(0)));
  const double c3 = pow(px-pm(0),2) + pow(py-pm(1),2) - pow(Radius(),2);
    
  const double discr = c2*c2 - 4*c1*c3;

  if(discr < 0)
    return;

  ARRAY<double> t;

  if(fabs(discr) < 1e-20)
    t.Append(-0.5*c2/c1);
  else
    {
      t.Append((-c2+sqrt(discr))/(2.*c1));
      t.Append((-c2-sqrt(discr))/(2.*c1));
    }

  for(int i=0; i<t.Size(); i++)
    {
      Point<D> p (px-t[i]*b,py+t[i]*a);

      double angle = atan2(p(1),p(0))+M_PI;

      if(angle > StartAngle()-eps && angle < EndAngle()+eps)
	points.Append(p);
    }
}
Exemple #11
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void CCopyProperties::OnDeleteCopyData() 
{
	int nCount = m_lCopyData.GetSelCount();
	if(nCount)
	{
		m_bDeletedData = true;

		//Get the selected indexes
		ARRAY items;
		items.SetSize(nCount);
		m_lCopyData.GetSelItems(nCount, items.GetData()); 

		items.SortDescending();

		//Get the selected itemdata
		for(int i = 0; i < nCount; i++)
		{
			m_DeletedData.Add(m_lCopyData.GetItemData(items[i]));
			m_lCopyData.DeleteString(items[i]);
		}		
	}
}
void CCopyProperties::OnDeleteCopyData() 
{
	int nCount = m_lCopyData.GetSelCount();
	if(nCount)
	{
		m_bDeletedData = true;

		//Get the selected indexes
		ARRAY items;
		items.SetSize(nCount);
		m_lCopyData.GetSelItems(nCount, items.GetData()); 

		items.SortDescending();

		//Get the selected itemdata
		for(int i = 0; i < nCount; i++)
		{
			int row = items[i];
			m_DeletedData.Add((int)m_lCopyData.GetItemData(row));
			m_lCopyData.DeleteString(row);

			int newRow = row-1;
			if(newRow < 0)
			{
				newRow = 0;
			}

			if(newRow >= 0 && newRow < m_lCopyData.GetCount())
			{
				m_lCopyData.SetSel(newRow);
				m_lCopyData.SetCurSel(newRow);
				m_lCopyData.SetCaretIndex(newRow);
				m_lCopyData.SetAnchorIndex(newRow);
			}
		}		
	}
}
Exemple #13
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void Polyhedra :: GetPrimitiveData (const char *& classname, 
				    ARRAY<double> & coeffs) const
{
  classname = "Polyhedra";
  coeffs.SetSize(0);
  coeffs.Append (points.Size());
  coeffs.Append (faces.Size());
  coeffs.Append (planes.Size());

  /*
  int i, j;
  for (i = 1; i <= planes.Size(); i++)
    {
      planes.Elem(i)->Print (*testout);
    }
  for (i = 1; i <= faces.Size(); i++)
    {
      (*testout) << "face " << i << " has plane " << faces.Get(i).planenr << endl;
      for (j = 1; j <= 3; j++)
	(*testout) << points.Get(faces.Get(i).pnums[j-1]);
      (*testout) << endl;
    }
  */
}
  /** calculates lineintersections:
      for lines $$ a x + b y + c = 0 $$ the interecting points are calculated
      and stored in points */
  virtual void LineIntersections (const double a, const double b, const double c,
				  ARRAY < Point<2> > & points, const double eps) const
  {points.SetSize(0);}
inline int FindInnerPoint2 (POINTARRAY & points,
			    FACEARRAY & faces,
			    Point3d & p)
{
  static int timer = NgProfiler::CreateTimer ("FindInnerPoint2");
  NgProfiler::RegionTimer reg (timer);

  ARRAY<Vec3d> a;
  ARRAY<double> c;
  Mat<3> m, inv;
  Vec<3> rs, x, pmin;

  int nf = faces.Size();

  a.SetSize (nf);
  c.SetSize (nf);

  for (int i = 0; i < nf; i++)
    {
      Point3d p1 = points.Get(faces[i][0]);
      a[i] = Cross (points.Get(faces[i][1]) - p1,
		    points.Get(faces[i][2]) - p1);
      a[i] /= a[i].Length();
      c[i] = - (a[i].X() * p1.X() + a[i].Y() * p1.Y() + a[i].Z() * p1.Z());
    }


  x = 0;
  
  
  double hmax = 0;
  for (int i = 0; i < nf; i++)
    {
      const Element2d & el = faces[i];
      for (int j = 1; j <= 3; j++)
	{
	  double hi = Dist (points.Get(el.PNumMod(j)),
			    points.Get(el.PNumMod(j+1)));
	  if (hi > hmax) hmax = hi;
	}
    }

  double fmin = 0;

  for (int i1 = 1; i1 <= nf; i1++)
    for (int i2 = i1+1; i2 <= nf; i2++)
      for (int i3 = i2+1; i3 <= nf; i3++)
        for (int i4 = i3+1; i4 <= nf; i4++)
          {
	    m(0, 0) = a.Get(i1).X() - a.Get(i2).X();
	    m(0, 1) = a.Get(i1).Y() - a.Get(i2).Y();
	    m(0, 2) = a.Get(i1).Z() - a.Get(i2).Z();
	    rs(0) = c.Get(i2) - c.Get(i1);

	    m(1, 0) = a.Get(i1).X() - a.Get(i3).X();
	    m(1, 1) = a.Get(i1).Y() - a.Get(i3).Y();
	    m(1, 2) = a.Get(i1).Z() - a.Get(i3).Z();
	    rs(1) = c.Get(i3) - c.Get(i1);

	    m(2, 0) = a.Get(i1).X() - a.Get(i4).X();
	    m(2, 1) = a.Get(i1).Y() - a.Get(i4).Y();
	    m(2, 2) = a.Get(i1).Z() - a.Get(i4).Z();
	    rs(2) = c.Get(i4) - c.Get(i1);


	    if (fabs (Det (m)) > 1e-10)
	      {
		CalcInverse (m, inv);
		x = inv * rs;

		double f = -1e10;
		for (int i = 0; i < nf; i++)
		  {
		    double hd = 
		      x(0) * a[i].X() + x(1) * a[i].Y() + x(2) * a[i].Z() + c[i];
		    if (hd > f) f = hd;
		    if (hd > fmin) break;
		  }

		if (f < fmin)
		  {
		    fmin = f;
		    pmin = x;
		  }
	      }
          }

  p = Point3d (pmin(0), pmin(1), pmin(2));
  (*testout) << "fmin = " << fmin << endl;
  return (fmin < -1e-3 * hmax);
}
Exemple #16
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void Primitive :: GetPrimitiveData (const char *& classname, 
				    ARRAY<double> & coeffs) const
{
  classname = "undef";
  coeffs.SetSize (0);
}
 void Clear() {
     boundary.SetSize(0);
 };
Exemple #18
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  void WriteTETFormat (const Mesh & mesh,
		       const string & filename)//, const string& problemType )
  {
    string problemType = "";
    if(!mesh.PureTetMesh())
      throw NgException("Can only export pure tet mesh in this format");

    cout << "starting .tet export to file " << filename << endl;


    ARRAY<int> point_ids,edge_ids,face_ids;
    ARRAY<int> elnum(mesh.GetNE());
    elnum = -1;

    
    ARRAY<int> userdata_int;
    ARRAY<double> userdata_double;
    ARRAY<int> ports;

    ARRAY<int> uid_to_group_3D, uid_to_group_2D, uid_to_group_1D, uid_to_group_0D;

    int pos_int = 0;
    int pos_double = 0;
    
    bool haveuserdata = 
      (mesh.GetUserData("TETmesh:double",userdata_double) &&
       mesh.GetUserData("TETmesh:int",userdata_int) && 
       mesh.GetUserData("TETmesh:ports",ports) &&
       mesh.GetUserData("TETmesh:point_id",point_ids,PointIndex::BASE) &&
       mesh.GetUserData("TETmesh:uid_to_group_3D",uid_to_group_3D) &&
       mesh.GetUserData("TETmesh:uid_to_group_2D",uid_to_group_2D) &&
       mesh.GetUserData("TETmesh:uid_to_group_1D",uid_to_group_1D) &&
       mesh.GetUserData("TETmesh:uid_to_group_0D",uid_to_group_0D));


    int version,subversion;

    if(haveuserdata)
      {
	version = int(userdata_double[0]);
	subversion = int(10*(userdata_double[0] - version));
	pos_double++;
      }
    else
      {
	version = 2;
	subversion = 0;
      }

    
    if(version >= 2)
      {
	// test if ids are disjunct, if not version 2.0 not possible
	int maxbc(-1),mindomain(-1);
	
	for(ElementIndex i=0; i<mesh.GetNE(); i++)
	  if(i==0 || mesh[i].GetIndex() < mindomain)
	    mindomain = mesh[i].GetIndex();
	for(int i=1; i<=mesh.GetNFD(); i++)
	  if(i==1 || mesh.GetFaceDescriptor(i).BCProperty() > maxbc)
	    maxbc = mesh.GetFaceDescriptor(i).BCProperty();
	
	if(maxbc >= mindomain)
	  {
	    cout << "WARNING: writing version " << version << "." << subversion << " tetfile not possible, ";
	    version = 1; subversion = 1;
	    cout << "using version " << version << "." << subversion << endl;
	  }
      }



    int startsize = point_ids.Size();
    point_ids.SetSize(mesh.GetNP()+1);
    for(int i=startsize; i<point_ids.Size(); i++)
      point_ids[i] = -1;


    for(int i=0; i<PointIndex::BASE; i++)
      point_ids[i] = -1;


    INDEX_2_CLOSED_HASHTABLE<int> edgenumbers(6*mesh.GetNE()+3*mesh.GetNSE());;
    INDEX_3_CLOSED_HASHTABLE<int> facenumbers(4*mesh.GetNE()+mesh.GetNSE());

    ARRAY<INDEX_2> edge2node;
    ARRAY<INDEX_3> face2edge;
    ARRAY<INDEX_4> element2face;

    int numelems(0),numfaces(0),numedges(0),numnodes(0);

    for(SegmentIndex si = 0; si < mesh.GetNSeg(); si++)
      {
	const Segment & seg = mesh[si];
	INDEX_2 i2(seg.p1,seg.p2);
	i2.Sort();
	if(edgenumbers.Used(i2))
	  continue;

	numedges++;
	edgenumbers.Set(i2,numedges);
	edge2node.Append(i2);

	edge_ids.Append(seg.edgenr);

	if(point_ids[seg.p1] == -1)
	  point_ids[seg.p1] = (version >= 2) ? seg.edgenr : 0;
	if(point_ids[seg.p2] == -1)
	  point_ids[seg.p2] = (version >= 2) ? seg.edgenr : 0;
      }

    for(SurfaceElementIndex si = 0; si < mesh.GetNSE(); si++)
      {
	if(mesh[si].IsDeleted())
	  continue;

	const Element2d & elem = mesh[si];

	numfaces++;
	INDEX_3 i3(elem[0], elem[1], elem[2]);

	int min = i3[0];
	int minpos = 0;
	for(int j=1; j<3; j++)
	  if(i3[j] < min)
	    {
	      min = i3[j]; minpos = j;
	    }
	if(minpos == 1)
	  {
	    int aux = i3[0]; i3[0] = i3[1]; i3[1] = i3[2]; i3[2] = aux;
	  }
	else if(minpos == 2)
	  {
	    int aux = i3[0]; i3[0] = i3[2]; i3[2] = i3[1]; i3[1] = aux;
	  }
	facenumbers.Set(i3,numfaces);

	int bc = mesh.GetFaceDescriptor(elem.GetIndex()).BCProperty();
	face_ids.Append(bc);

	for(int j=0; j<3; j++)
	  if(point_ids[elem[j]] == -1)
	    point_ids[elem[j]] = (version >= 2) ? bc : 0;

	INDEX_2 i2a,i2b;
	INDEX_3 f_to_n;
	for(int j=0; j<3; j++)
	  {
	    i2a = INDEX_2(i3[j],i3[(j+1)%3]);
	    i2b[0] = i2a[1]; i2b[1] = i2a[0];
	    if(edgenumbers.Used(i2a))
	      f_to_n[j] = edgenumbers.Get(i2a);
	    else if(edgenumbers.Used(i2b))
	      f_to_n[j] = -edgenumbers.Get(i2b);
	    else
	      {
		numedges++;
		edgenumbers.Set(i2a,numedges);
		edge2node.Append(i2a);
		f_to_n[j] = numedges;
		if(version >= 2)
		  edge_ids.Append(bc);
		else
		  edge_ids.Append(0);
	      }
	  }
	face2edge.Append(f_to_n);
      }
    
    for(ElementIndex ei = 0; ei < mesh.GetNE(); ei++)
      {
	const Element & el = mesh[ei];

	if(el.IsDeleted())
	  continue;

	numelems++;
	elnum[ei] = numelems;

	static int tetfaces[4][3] =
	  { { 0, 2, 1 },
	    { 0, 1, 3 },
	    { 1, 2, 3 },
	    { 2, 0, 3 } };
	
	for(int j=0; j<4; j++)
	  if(point_ids[el[j]] == -1)
	    point_ids[el[j]] = (version >= 2) ? el.GetIndex() : 0;

	INDEX_4 e_to_f;

	for(int i = 0; i < 4; i++)
	  {
	    INDEX_3 i3a(el[tetfaces[i][0]],el[tetfaces[i][1]],el[tetfaces[i][2]]);
	    
	    int min = i3a[0];
	    int minpos = 0;
	    for(int j=1; j<3; j++)
	      if(i3a[j] < min)
		{
		  min = i3a[j]; minpos = j;
		}
	    if(minpos == 1)
	      {
		int aux = i3a[0]; i3a[0] = i3a[1]; i3a[1] = i3a[2]; i3a[2] = aux;
	      }
	    else if(minpos == 2)
	      {
		int aux = i3a[0]; i3a[0] = i3a[2]; i3a[2] = i3a[1]; i3a[1] = aux;
	      }
	    INDEX_3 i3b(i3a[0],i3a[2],i3a[1]);
	    

	    if(facenumbers.Used(i3a))
	      e_to_f[i] = facenumbers.Get(i3a);
	    else if(facenumbers.Used(i3b))
	      e_to_f[i] = -facenumbers.Get(i3b);
	    else
	      {
		numfaces++;
		facenumbers.Set(i3a,numfaces);
		e_to_f[i] = numfaces;
		if(version >= 2)
		  face_ids.Append(el.GetIndex());
		else
		  face_ids.Append(0);

		INDEX_2 i2a,i2b;
		INDEX_3 f_to_n;
		for(int j=0; j<3; j++)
		  {
		    i2a = INDEX_2(i3a[j],i3a[(j+1)%3]);
		    i2b[0] = i2a[1]; i2b[1] = i2a[0];
		    if(edgenumbers.Used(i2a))
		      f_to_n[j] = edgenumbers.Get(i2a);
		    else if(edgenumbers.Used(i2b))
		      f_to_n[j] = -edgenumbers.Get(i2b);
		    else
		      {
			numedges++;
			edgenumbers.Set(i2a,numedges);
			edge2node.Append(i2a);
			f_to_n[j] = numedges;
			if(version >= 2)
			  edge_ids.Append(el.GetIndex());
			else
			  edge_ids.Append(0);
		      }
		  }
		face2edge.Append(f_to_n);	  
	      }
	  }
	element2face.Append(e_to_f);
      }




    ofstream outfile(filename.c_str());

    outfile.precision(16);

    int unitcode;
    double tolerance;
    double dS1,dS2, alphaDeg;
    double x3D,y3D,z3D;
    int modelverts(0), modeledges(0), modelfaces(0), modelcells(0);

    int numObj0D,numObj1D,numObj2D,numObj3D;
    int numports = ports.Size();

    ARRAY<int> nodenum(point_ids.Size()+1);

    nodenum = -1;
	    


    numnodes = 0;
    for(int i=0; i<point_ids.Size(); i++)
      {
	if(point_ids[i] != -1)
	  {
	    numnodes++;
	    nodenum[i] = numnodes;
	  }
      }


    if(haveuserdata)
      {
	unitcode = userdata_int[pos_int];
	pos_int++;

	tolerance = userdata_double[pos_double];
	pos_double++;

	dS1 = userdata_double[pos_double];
	pos_double++;
	dS2 = userdata_double[pos_double];
	pos_double++;
	alphaDeg = userdata_double[pos_double];
	pos_double++;

	x3D = userdata_double[pos_double];
	pos_double++;
	y3D = userdata_double[pos_double];
	pos_double++;
	z3D = userdata_double[pos_double];
	pos_double++;

	if(version == 2)
	  {
	    modelverts = userdata_int[pos_int];
	    pos_int++;
	    modeledges = userdata_int[pos_int];
	    pos_int++;
	    modelfaces = userdata_int[pos_int];
	    pos_int++;
	    modelcells = userdata_int[pos_int];
	    pos_int++;
	  }

	numObj3D = userdata_int[pos_int];
	pos_int++;
	numObj2D = userdata_int[pos_int];
	pos_int++;
	numObj1D = userdata_int[pos_int];
	pos_int++;
	numObj0D = userdata_int[pos_int];
	pos_int++;
      }
    else
      {
	unitcode = 3;

	tolerance = 1e-5;

	dS1 = dS2 = alphaDeg = 0;

	x3D = y3D = z3D = 0;

	modelverts = modeledges = modelfaces = modelcells = 0;
	
	numObj3D = numObj2D = numObj1D = numObj0D = 0;
      }

    string uidpid;
    if(version == 1)
      uidpid = "PID";
    else if (version == 2)
      uidpid = "UID";
    

    ARRAY< ARRAY<int,PointIndex::BASE>* > idmaps;
    for(int i=1; i<=mesh.GetIdentifications().GetMaxNr(); i++)
      {
	if(mesh.GetIdentifications().GetType(i) == Identifications::PERIODIC)
	  {
	    idmaps.Append(new ARRAY<int,PointIndex::BASE>);
	    mesh.GetIdentifications().GetMap(i,*idmaps.Last(),true);
	  }
      }

    ARRAY<int> id_num,id_type;
    ARRAY< ARRAY<int> *> id_groups;


	// sst 2008-03-12: Write problem class...
	{
		std::string block;
		block  = "// CST Tetrahedral ";
		block += !problemType.empty() ? problemType : "High Frequency";
		block += " Mesh, Version no.:\n";
		
		size_t size = block.size()-3;
		block += "// ";
		block.append( size, '^' );
		block += "\n";

		outfile
			<< block
			<< version << "." << subversion << "\n\n";
	}

	outfile 
	    << "// User Units Code (1=CM 2=MM 3=M 4=MIC 5=NM 6=FT 7=IN 8=MIL):\n" \
	    << "// ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n" \
	    << unitcode << "\n\n"					\
	    << "// Geometric coord \"zero\" tolerance threshold:\n" \
	    << "// ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n" \
	    << tolerance << "\n\n"				  \
	    << "// Periodic UnitCell dS1 , dS2 , alphaDeg:\n" \
	    << "// ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n" \
	    << dS1 << " " << dS2 << " " << alphaDeg <<"\n\n"	\
	    << "// Periodic UnitCell origin in global coords (x3D,y3D,z3D):\n" \
	    << "// ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n" \
	    << x3D << " " << y3D << " " << z3D << "\n" << endl;

    if(version == 2)
      {
	outfile << "// Model entity count: Vertices, Edges, Faces, Cells:\n" \
		<< "// ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n" \
		<< modelverts << " " << modeledges << " " << modelfaces << " " << modelcells << endl << endl;
      }


    outfile << "// Topological mesh-entity counts (#elements,#faces,#edges,#nodes):\n" \
	    << "// ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n";
    outfile << numelems << " " 
	    << numfaces << " "
	    << numedges << " " 
	    << numnodes << endl << endl;

    outfile << "// NodeID, X, Y, Z, Type (0=Reg 1=PMaster 2=PSlave 3=CPMaster 4=CPSlave), "<< uidpid <<":\n" \
	    << "// ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n";
       


    id_num.SetSize(mesh.GetNP()+1);
    id_type.SetSize(mesh.GetNP()+1);
    id_num = 0;
    id_type = 0;

    int n2,n4,n8;
    n2 = n4 = n8 = 0;

 
    for(int i=PointIndex::BASE; i<mesh.GetNP()+PointIndex::BASE; i++)
      {
	if(id_num[i] != 0)
	  continue;

	if(nodenum[i] == -1)
	  continue;

	ARRAY<int> group;
	group.Append(i);
	for(int j=0; j<idmaps.Size(); j++)
	  {
	    startsize = group.Size();
	    for(int k=0; k<startsize; k++)
	      {
		int id = (*idmaps[j])[group[k]];
		if(id != 0 && !group.Contains(id) && nodenum[id] != -1)
		  {
		    group.Append(id);
		    id_num[id] = j+1+id_num[group[k]];
		  }
	      }
	  }
	if(group.Size() > 1)
	  {
	    id_groups.Append(new ARRAY<int>(group));
	    if(group.Size() == 2)
	      {
		id_type[i] = 1;
		id_type[group[1]] = 2;
		n2++;
	      }
	    else if(group.Size() == 4)
	      {
		id_type[i] = 3;
		for(int j=1; j<group.Size(); j++)
		  id_type[group[j]] = 4;
		n4++;
	      }
	    else if(group.Size() == 8)
	      {
		id_type[i] = 5;
		for(int j=1; j<group.Size(); j++)
		  id_type[group[j]] = 6;
		n8++;
	      }
	    else
	      cerr << "ERROR: Identification group size = " << group.Size() << endl;
	  }
	
      }


    for(PointIndex i=PointIndex::BASE; i<mesh.GetNP()+PointIndex::BASE; i++)
      {
	if(nodenum[i] == -1)
	  continue;
	outfile << nodenum[i] << " "
		<< mesh[i](0) << " "
		<< mesh[i](1) << " "
		<< mesh[i](2) << " " << id_type[i] << " ";
	if(i-PointIndex::BASE < point_ids.Size())
	  outfile << point_ids[i];
	else
	  outfile << "0";
	outfile << "\n";
      }
    outfile << endl;

    outfile << "\n// Number of Periodic Master Nodes:\n" \
	    << "// ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n" \
	    << n2 << "\n"			       \
	    << "\n" \
	    << "// MasterNodeID, SlaveNodeID, TranslCode (1=dS1 2=dS2 3=dS1+dS2):\n" \
	    << "// ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n";
    for(int i=0; i<id_groups.Size(); i++)
      {
	if(id_groups[i]->Size() != 2)
	  continue;

	for(int j=0; j<id_groups[i]->Size(); j++)
	  outfile << nodenum[(*id_groups[i])[j]] << " ";
	for(int j=1; j<id_groups[i]->Size(); j++)
	  outfile << id_num[(*id_groups[i])[j]] << " ";
	outfile << "\n";

	delete id_groups[i];
	id_groups[i] = NULL;
      }
    outfile << endl;
	
	
    outfile << "// Number of Corner Periodic Master Nodes:\n"	      \
	    << "// ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n" \
	    << n4 << "\n"				      \
	    << "\n" \
	    << "// MasterNodeID, 3-SlaveNodeID's, 3-TranslCodes (1=dS1 2=dS2 3=dS1+dS2):\n" \
	    << "// ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n";


    for(int i=0; i<id_groups.Size(); i++)
      {
	if(!id_groups[i] || id_groups[i]->Size() != 4)
	  continue;

	for(int j=0; j<id_groups[i]->Size(); j++)
	  outfile << nodenum[(*id_groups[i])[j]] << " ";
	for(int j=1; j<id_groups[i]->Size(); j++)
	  {
	    outfile << id_num[(*id_groups[i])[j]] << " ";
	  }
	outfile << "\n";

	delete id_groups[i];
	id_groups[i] = NULL;
      }
    outfile << endl;


    outfile << "// Number of Cubic Periodic Master Nodes:\n"	     \
	    << "// ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n" \
	    << n8 << "\n"				     \
	    << "\n" \
	    << "// MasterNodeID, 7-SlaveNodeID's, TranslCodes:\n" \
	    << "// ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n";
    for(int i=0; i<id_groups.Size(); i++)
      {
	if(!id_groups[i] || id_groups[i]->Size() != 8)
	  continue;

	for(int j=0; j<id_groups[i]->Size(); j++)
	  outfile << nodenum[(*id_groups[i])[j]] << " ";
	for(int j=1; j<id_groups[i]->Size(); j++)
	  outfile << id_num[(*id_groups[i])[j]] << " ";
	outfile << "\n";

	delete id_groups[i];
	id_groups[i] = NULL;
      }
    outfile << endl;

    


    outfile << "// EdgeID, NodeID0, NodeID1, Type (0=Reg 1=PMaster 2=PSlave 3=CPMaster 4=CPSlave), "<<uidpid<<":\n" \
	    << "// ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n";

    
      
    ARRAY< ARRAY<int>* > vertex_to_edge(mesh.GetNP()+1);
    for(int i=0; i<=mesh.GetNP(); i++)
      vertex_to_edge[i] = new ARRAY<int>;

    ARRAY< ARRAY<int,PointIndex::BASE>* > idmaps_edge(idmaps.Size());
    for(int i=0; i<idmaps_edge.Size(); i++)
      {
	idmaps_edge[i] = new ARRAY<int,PointIndex::BASE>(numedges);
	(*idmaps_edge[i]) = 0;
      }

    ARRAY<int> possible;
    for(int i=0; i<edge2node.Size(); i++)
      {
	const INDEX_2 & v = edge2node[i];
	for(int j=0; j<idmaps.Size(); j++)
	  {
	    INDEX_2 vid((*idmaps[j])[v[0]], (*idmaps[j])[v[1]]);
	    if(vid[0] != 0 && vid[0] != v[0] && vid[1] != 0 && vid[1] != v[1])
	      {
		Intersection(*vertex_to_edge[vid[0]],*vertex_to_edge[vid[1]],possible);
		if(possible.Size() == 1)
		  {
		    (*idmaps_edge[j])[possible[0]] = i+1;
		    (*idmaps_edge[j])[i+1] = possible[0];
		  }
		else if(possible.Size() > 0)
		  {
		    cerr << "ERROR: too many possible edge identifications" << endl;
		    (*testout) << "ERROR: too many possible edge identifications" << endl
			       << "*vertex_to_edge["<<vid[0]<<"] " << *vertex_to_edge[vid[0]] << endl
			       << "*vertex_to_edge["<<vid[1]<<"] " << *vertex_to_edge[vid[1]] << endl
			       << "possible " << possible << endl;
		  }
	      }
	  }
	vertex_to_edge[v[0]]->Append(i+1);
	vertex_to_edge[v[1]]->Append(i+1);
      }


    for(int i=0; i<vertex_to_edge.Size(); i++)
      delete vertex_to_edge[i];


    id_groups.SetSize(0);
    id_num.SetSize(numedges+1);
    id_num = 0;
    id_type.SetSize(numedges+1);
    id_type = 0;

    n2 = n4 = n8 = 0;

    for(int i=1; i<=edge2node.Size(); i++)
      {
	if(id_num[i] != 0)
	  continue;


	ARRAY<int> group;
	group.Append(i);
	for(int j=0; j<idmaps_edge.Size(); j++)
	  {
	    startsize = group.Size();
	    for(int k=0; k<startsize; k++)
	      {
		int id = (*idmaps_edge[j])[group[k]];
		if(id != 0 && !group.Contains(id))
		  {
		    group.Append(id);
		    id_num[id] = j+1+id_num[group[k]];
		  }
	      }
	  }
	if(group.Size() > 1)
	  {
	    id_num[i] = 1;
	    id_groups.Append(new ARRAY<int>(group));
	    if(group.Size() == 2)
	      {
		id_type[i] = 1;
		id_type[group[1]] = 2;
		n2++;
	      }
	    else if(group.Size() == 4)
	      {
		id_type[i] = 3;
		for(int j=1; j<group.Size(); j++)
		  id_type[group[j]] = 4;
		n4++;
	      }
	    else
	      {
		cerr << "ERROR: edge identification group size = " << group.Size() << endl;
		(*testout) << "edge group " << group << endl;
		for(int j=0; j<idmaps_edge.Size(); j++)
		  {
		    (*testout) << "edge id map " << j << endl << *idmaps_edge[j] << endl;
		  }
	      }
	  }
      }



    for(int i=1; i<=edge2node.Size(); i++)
      {
	if(id_num[i] != 0)
	  continue;


	ARRAY<int> group;
	group.Append(i);
	for(int j=0; j<idmaps_edge.Size(); j++)
	  {
	    startsize = group.Size();
	    for(int k=0; k<startsize; k++)
	      {
		int id = (*idmaps_edge[j])[group[k]];
		if(id != 0 && !group.Contains(id))
		  {
		    group.Append(id);
		    id_num[id] = j+1+id_num[group[k]];
		  }
	      }
	  }
	if(group.Size() > 1)
	  {
	    id_num[i] = 1;
	    id_groups.Append(new ARRAY<int>(group));
	    if(group.Size() == 2)
	      {
		id_type[i] = 1;
		id_type[group[1]] = 2;
		n2++;
	      }
	    else if(group.Size() == 4)
	      {
		id_type[i] = 3;
		for(int j=1; j<group.Size(); j++)
		  id_type[group[j]] = 4;
		n4++;
	      }
	    else
	      {
		cerr << "ERROR: edge identification group size = " << group.Size() << endl;
		(*testout) << "edge group " << group << endl;
		for(int j=0; j<idmaps_edge.Size(); j++)
		  {
		    (*testout) << "edge id map " << j << endl << *idmaps_edge[j] << endl;
		  }
	      }
	  }
	
      }

    
    for(int i=0; i<edge2node.Size(); i++)
      outfile << i+1 << " " << nodenum[edge2node[i][0]] << " " << nodenum[edge2node[i][1]] 
	      << " " << id_type[i+1] << " " << edge_ids[i] << "\n";

    outfile << endl;

    

    outfile << "// Number of Periodic Master Edges:\n"\
	    << "// ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n"\
	    << n2 << "\n"			      \
	    << "\n"\
	    << "// MasterEdgeID, SlaveEdgeID, TranslCode (1=dS1 2=dS2 3=dS1+dS2):\n"\
	    << "// ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n";
    for(int i=0; i<id_groups.Size(); i++)
      {
	if(id_groups[i]->Size() != 2)
	  continue;

	for(int j=0; j<id_groups[i]->Size(); j++)
	  outfile << (*id_groups[i])[j] << " ";
	for(int j=1; j<id_groups[i]->Size(); j++)
	  outfile << id_num[(*id_groups[i])[j]] << " ";
	outfile << "\n";

	delete id_groups[i];
	id_groups[i] = NULL;
      }
    outfile << endl;

    outfile << "// Number of Corner Periodic Master Edges:\n"		\
	    << "// ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n"\
	    << n4 << "\n"				     \
	    << "\n"\
	    << "// MasterEdgeID, 3 SlaveEdgeID's, 3 TranslCode (1=dS1 2=dS2 3=dS1+dS2):\n"\
	    << "// ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n";
    for(int i=0; i<id_groups.Size(); i++)
      {
	if(!id_groups[i] || id_groups[i]->Size() != 4)
	  continue;

	for(int j=0; j<id_groups[i]->Size(); j++)
	  outfile << (*id_groups[i])[j] << " ";
	for(int j=1; j<id_groups[i]->Size(); j++)
	  outfile << id_num[(*id_groups[i])[j]] << " ";
	outfile << "\n";

	delete id_groups[i];
	id_groups[i] = NULL;
      }
    outfile << endl;


    outfile << "// FaceID, EdgeID0, EdgeID1, EdgeID2, FaceType (0=Reg 1=PMaster 2=PSlave), "<<uidpid<<":\n" \
	    << "// ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n";

    
    
    ARRAY< ARRAY<int>* > edge_to_face(numedges+1);
    for(int i=0; i<edge_to_face.Size(); i++)
      edge_to_face[i] = new ARRAY<int>;

    
    for(int i=0; i<idmaps.Size(); i++)
      {
	idmaps[i]->SetSize(numfaces);
	(*idmaps[i]) = 0;
      }

    
    for(int i=0; i<face2edge.Size(); i++)
      {
	for(int j=0; j<idmaps_edge.Size(); j++)
	  {
	    int e1id,e2id,e3id;
	    e1id = (*idmaps_edge[j])[abs(face2edge[i][0])];
	    e2id = (*idmaps_edge[j])[abs(face2edge[i][1])];
	    e3id = (*idmaps_edge[j])[abs(face2edge[i][2])];
	    if(e1id != 0 && e1id != abs(face2edge[i][0]) &&
	       e2id != 0 && e2id != abs(face2edge[i][1]) &&
	       e3id != 0 && e3id != abs(face2edge[i][2]))
	      {
		Intersection(*edge_to_face[e1id],*edge_to_face[e2id],*edge_to_face[e3id],possible);
		if(possible.Size() == 1)
		  {
		    (*idmaps[j])[possible[0]] = i+1;
		    (*idmaps[j])[i+1] = possible[0];
		  }
		else if(possible.Size() > 0)
		  cerr << "ERROR: too many possible face identifications" << endl;
	      }
	  }

	edge_to_face[abs(face2edge[i][0])]->Append(i+1);
	edge_to_face[abs(face2edge[i][1])]->Append(i+1);
	edge_to_face[abs(face2edge[i][2])]->Append(i+1);
      }

    for(int i=0; i<edge_to_face.Size(); i++)
      delete edge_to_face[i];


    for(int i=0; i<idmaps_edge.Size(); i++)
      delete idmaps_edge[i];

    
    id_groups.SetSize(0);
    id_num.SetSize(numfaces+1);
    id_num = 0;

    n2 = n4 = n8 = 0;

    for(int i=1; i<=numfaces; i++)
      {
	if(id_num[i] != 0)
	  continue;

	ARRAY<int> group;
	group.Append(i);
	for(int j=0; j<idmaps.Size(); j++)
	  {
	    startsize = group.Size();
	    for(int k=0; k<startsize; k++)
	      {
		int id = (*idmaps[j])[group[k]];
		if(id != 0 && !group.Contains(id))
		  {
		    group.Append(id);
		    id_num[id] = j+1+id_num[group[k]];
		  }
	      }
	  }
	if(group.Size() > 1)
	  {
	    id_num[i] = -1;
	    id_groups.Append(new ARRAY<int>(group));
	    if(group.Size() == 2)
	      n2++;
	    else
	      cerr << "ERROR: face identification group size = " << group.Size() << endl;
	  }
	
      }


    for(int i=0; i<idmaps.Size(); i++)
      delete idmaps[i];




    for(int i=0; i<face2edge.Size(); i++)
      {	
	outfile << i+1 << " ";
	for(int j=0; j<3; j++)
	  outfile << face2edge[i][j] << " ";

	if(id_num[i+1] == 0)
	  outfile << 0;
	else if(id_num[i+1] == -1)
	  outfile << 1;
	else
	  outfile << 2;

	outfile << " " << face_ids[i] <<"\n";
      }
    outfile << endl;


    outfile << "// Number of Periodic Master Faces:\n"\
	    << "// ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n"\
	    << n2 << "\n"			      \
	    << "\n"\
	    << "// MasterFaceID, SlaveFaceID, TranslCode (1=dS1 2=dS2):\n"\
	    << "// ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n";
    for(int i=0; i<id_groups.Size(); i++)
      {
	if(id_groups[i]->Size() != 2)
	  continue;

	for(int j=0; j<id_groups[i]->Size(); j++)
	  outfile << (*id_groups[i])[j] << " ";
	for(int j=1; j<id_groups[i]->Size(); j++)
	  outfile << id_num[(*id_groups[i])[j]] << " ";
	outfile << "\n";

	delete id_groups[i];
      }
    outfile << endl;

    


    outfile << "// ElemID, FaceID0, FaceID1, FaceID2, FaceID3, "<<uidpid<<":\n" \
	    << "// ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n";

    for(ElementIndex i=0; i<mesh.GetNE(); i++)
      {
	if(elnum[i] >= 0)
	  {
	    outfile << elnum[i] << " ";
	    for(int j=0; j<4; j++)
	      outfile << element2face[elnum[i]-1][j] << " ";

	    outfile << mesh[i].GetIndex() << "\n";
	  }
      }
    outfile << endl;

    outfile << "// ElemID, NodeID0, NodeID1, NodeID2, NodeID3:\n" \
	    << "// ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n";

    
    for(ElementIndex i=0; i<mesh.GetNE(); i++)
      {
	if(elnum[i] >= 0)
	  outfile << elnum[i] << " "
		  << nodenum[mesh[i][1]] << " " << nodenum[mesh[i][0]] << " " << nodenum[mesh[i][2]] << " " << nodenum[mesh[i][3]] << "\n";
      }
    outfile << endl;
    

    

    outfile << "// Physical Object counts (#Obj3D,#Obj2D,#Obj1D,#Obj0D):\n"
	    << "// ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n"
	    << " "<< numObj3D << " " << numObj2D << " " << numObj1D << " " << numObj0D << "\n" \
	    << "\n" \
	    << "// Number of Ports (Ports are a subset of Object2D list):\n" \
	    << "// ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n" \
	    << numports << "\n"						\
	    << endl;


    ARRAY< ARRAY<int> * > groups;

    int maxg = -1;
    for(int i = 0; i<uid_to_group_3D.Size(); i++)
      if(uid_to_group_3D[i] > maxg)
	maxg = uid_to_group_3D[i];
    for(int i = 0; i<uid_to_group_2D.Size(); i++)
      if(uid_to_group_2D[i] > maxg)
	maxg = uid_to_group_2D[i];
    for(int i = 0; i<uid_to_group_1D.Size(); i++)
      if(uid_to_group_1D[i] > maxg)
	maxg = uid_to_group_1D[i];
    for(int i = 0; i<uid_to_group_0D.Size(); i++)
      if(uid_to_group_0D[i] > maxg)
	maxg = uid_to_group_0D[i];

    groups.SetSize(maxg+1);
    for(int i=0; i<groups.Size(); i++)
      groups[i] = new ARRAY<int>;

    for(ElementIndex i=0; i<mesh.GetNE(); i++)
      if(uid_to_group_3D[mesh[i].GetIndex()] >= 0)
	groups[uid_to_group_3D[mesh[i].GetIndex()]]->Append(i+1);
      
    


    outfile << "// Object3D GroupID, #Elems <immediately followed by> ElemID List:\n" \
	    << "// ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n";
    for(int i=0; i<numObj3D; i++)
      {
	outfile << i << " " << groups[i]->Size() << "\n";
	for(int j=0; j<groups[i]->Size(); j++)
	  outfile << (*groups[i])[j] << "\n";
      }

    for(int i=0; i<groups.Size(); i++)
      groups[i]->SetSize(0);

    for(int i=0; i<face_ids.Size(); i++)
      if(uid_to_group_2D[face_ids[i]] >= 0)
	groups[uid_to_group_2D[face_ids[i]]]->Append(i+1);
      

    outfile << "// Object2D GroupID, #Faces <immediately followed by> FaceID List:\n" \
	    << "// ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n";
    for(int i=0; i<numObj2D; i++)
      {
	outfile << i << " " << groups[i]->Size() << "\n";
	for(int j=0; j<groups[i]->Size(); j++)
	  {
	    outfile << (*groups[i])[j];
	    if(ports.Contains(face_ids[(*groups[i])[j]-1]))
	      outfile << " P";
	    outfile << "\n";
	  }
      }
    outfile << endl;

    
    for(int i=0; i<groups.Size(); i++)
      groups[i]->SetSize(0);

    for(int i=0; i<edge_ids.Size(); i++)
      if(uid_to_group_1D[edge_ids[i]] >= 0)
	groups[uid_to_group_1D[edge_ids[i]]]->Append(i+1);



    outfile << "// Object1D GroupID, #Edges <immediately followed by> EdgeID List:\n" \
	    << "// ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n";
    for(int i=0; i<numObj1D; i++)
      {
	outfile << i << " " << groups[i]->Size() << "\n";
	for(int j=0; j<groups[i]->Size(); j++)
	  outfile << (*groups[i])[j] << "\n";
      }
    outfile << endl;

    
    for(int i=0; i<groups.Size(); i++)
      groups[i]->SetSize(0);
    for(PointIndex i=PointIndex::BASE; i<mesh.GetNP()+PointIndex::BASE; i++)
      {
	if(i-PointIndex::BASE < point_ids.Size())
	  {
	    if(uid_to_group_0D[point_ids[i]] >= 0)
	      groups[uid_to_group_0D[point_ids[i]]]->Append(i+1-PointIndex::BASE);
	  }
	else
	  groups[uid_to_group_0D[0]]->Append(i+1-PointIndex::BASE);
      }


    outfile << "// Object0D GroupID, #Nodes <immediately followed by> NodeID List:\n" \
	    << "// ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n";
    for(int i=0; i<numObj0D; i++)
      {
	outfile << i << " " << groups[i]->Size() << "\n";
	for(int j=0; j<groups[i]->Size(); j++)
	  outfile << (*groups[i])[j] << "\n";
      }
    outfile << endl;

    for(int i=0; i<groups.Size(); i++)
      delete groups[i];


    outfile.close();

    cout << ".tet export done" << endl;
  }
 void ClearILimit() {
     ilimit->SetSize(0);
 }
Exemple #20
0
void LocalH :: 
FindInnerBoxesRec2 (GradingBox * box,
		    class AdFront3 * adfront, 
		    ARRAY<Box3d> & faceboxes,
		    ARRAY<int> & faceinds, int nfinbox)
{
  if (!box) return;
  
  int i, j;
  
  GradingBox * father = box -> father;
  
  Point3d c(box->xmid[0], box->xmid[1], box->xmid[2]);
  Vec3d v(box->h2, box->h2, box->h2);
  Box3d boxc(c-v, c+v);

  Point3d fc(father->xmid[0], father->xmid[1], father->xmid[2]);
  Vec3d fv(father->h2, father->h2, father->h2);
  Box3d fboxc(fc-fv, fc+fv);

  Box3d boxcfc(c,fc);


  static ARRAY<int> faceused;
  static ARRAY<int> faceused2;
  static ARRAY<int> facenotused;

  faceused.SetSize(0);
  facenotused.SetSize(0);
  faceused2.SetSize(0);

  for (j = 1; j <= nfinbox; j++)
    {
      //      adfront->GetFaceBoundingBox (faceinds.Get(j), facebox);
      const Box3d & facebox = faceboxes.Get(faceinds.Get(j));
  
      if (boxc.Intersect (facebox))
	faceused.Append(faceinds.Get(j));
      else
	facenotused.Append(faceinds.Get(j));

      if (boxcfc.Intersect (facebox))
	faceused2.Append (faceinds.Get(j));
    }
  
  for (j = 1; j <= faceused.Size(); j++)
    faceinds.Elem(j) = faceused.Get(j);
  for (j = 1; j <= facenotused.Size(); j++)
    faceinds.Elem(j+faceused.Size()) = facenotused.Get(j);

  
  if (!father->flags.cutboundary)
    {
      box->flags.isinner = father->flags.isinner;
      box->flags.pinner = father->flags.pinner;
    }
  else
    {
      Point3d cf(father->xmid[0], father->xmid[1], father->xmid[2]);
      
      if (father->flags.isinner)
	box->flags.pinner = 1;
      else
	{
	  if (adfront->SameSide (c, cf, &faceused2))
	    box->flags.pinner = father->flags.pinner;
	  else
	    box->flags.pinner = 1 - father->flags.pinner;
	}
      
      if (box->flags.cutboundary)
	box->flags.isinner = 0;
      else
	box->flags.isinner = box->flags.pinner;
    }

  int nf = faceused.Size();
  for (i = 0; i < 8; i++)
    FindInnerBoxesRec2 (box->childs[i], adfront, faceboxes, faceinds, nf);
}
 void ClearOLimit() {
     olimit->SetSize(0);
 }
Exemple #22
0
  void MeshOptimize2d :: GenericImprove (Mesh & mesh)
  {
    if (!faceindex)
      {
	if (writestatus)
	  PrintMessage (3, "Generic Improve");

	for (faceindex = 1; faceindex <= mesh.GetNFD(); faceindex++)
	  GenericImprove (mesh);
      
	faceindex = 0;
      }

    // int j, k, l, ri;
    int np = mesh.GetNP();
    int ne = mesh.GetNSE();
    //    SurfaceElementIndex sei;

    
//     for (SurfaceElementIndex sei = 0; sei < ne; sei++)
//       {
// 	const Element2d & el = mesh[sei];
// 	(*testout) << "element " << sei << ": " <<flush;
// 	for(int j=0; j<el.GetNP(); j++)
// 	  (*testout) << el[j] << " " << flush;
// 	(*testout) << "IsDeleted() " << el.IsDeleted()<< endl;
//       }

    bool ok;
    int olddef, newdef;

    ARRAY<ImprovementRule*> rules;
    ARRAY<SurfaceElementIndex> elmap;
    ARRAY<int> elrot;
    ARRAY<PointIndex> pmap;
    ARRAY<PointGeomInfo> pgi;

    int surfnr = mesh.GetFaceDescriptor (faceindex).SurfNr();
  
    ImprovementRule * r1;

    // 2 triangles to quad
    r1 = new ImprovementRule;
    r1->oldels.Append (Element2d (1, 2, 3));
    r1->oldels.Append (Element2d (3, 2, 4));
    r1->newels.Append (Element2d (1, 2, 4, 3));
    r1->deledges.Append (INDEX_2 (2,3));
    r1->onp = 4;
    r1->bonus = 2;
    rules.Append (r1);

    // 2 quad to 1 quad
    r1 = new ImprovementRule;
    r1->oldels.Append (Element2d (1, 2, 3, 4));
    r1->oldels.Append (Element2d (4, 3, 2, 5));
    r1->newels.Append (Element2d (1, 2, 5, 4));
    r1->deledges.Append (INDEX_2 (2, 3));
    r1->deledges.Append (INDEX_2 (3, 4));
    r1->onp = 5;
    r1->bonus = 0;
    rules.Append (r1);

    // swap quads
    r1 = new ImprovementRule;
    r1->oldels.Append (Element2d (1, 2, 3, 4));
    r1->oldels.Append (Element2d (3, 2, 5, 6));
    r1->newels.Append (Element2d (1, 6, 3, 4));
    r1->newels.Append (Element2d (1, 2, 5, 6));
    r1->deledges.Append (INDEX_2 (2, 3));
    r1->onp = 6;
    r1->bonus = 0;
    rules.Append (r1);

    // three quads to 2
    r1 = new ImprovementRule;
    r1->oldels.Append (Element2d (1, 2, 3, 4));
    r1->oldels.Append (Element2d (2, 5, 6, 3));
    r1->oldels.Append (Element2d (3, 6, 7, 4));
    r1->newels.Append (Element2d (1, 2, 5, 4));
    r1->newels.Append (Element2d (4, 5, 6, 7));
    r1->deledges.Append (INDEX_2 (2, 3));
    r1->deledges.Append (INDEX_2 (3, 4));
    r1->deledges.Append (INDEX_2 (3, 6));
    r1->onp = 7;
    r1->bonus = -1;
    rules.Append (r1);

    // quad + 2 connected trigs to quad
    r1 = new ImprovementRule;
    r1->oldels.Append (Element2d (1, 2, 3, 4));
    r1->oldels.Append (Element2d (2, 5, 3));
    r1->oldels.Append (Element2d (3, 5, 4));
    r1->newels.Append (Element2d (1, 2, 5, 4));
    r1->deledges.Append (INDEX_2 (2, 3));
    r1->deledges.Append (INDEX_2 (3, 4));
    r1->deledges.Append (INDEX_2 (3, 5));
    r1->onp = 5;
    r1->bonus = 0;
    rules.Append (r1);

    // quad + 2 non-connected trigs to quad (a and b)
    r1 = new ImprovementRule;
    r1->oldels.Append (Element2d (1, 2, 3, 4));
    r1->oldels.Append (Element2d (2, 6, 3));
    r1->oldels.Append (Element2d (1, 4, 5));
    r1->newels.Append (Element2d (1, 3, 4, 5));
    r1->newels.Append (Element2d (1, 2, 6, 3));
    r1->deledges.Append (INDEX_2 (1, 4));
    r1->deledges.Append (INDEX_2 (2, 3));
    r1->onp = 6;
    r1->bonus = 0;
    rules.Append (r1);

    r1 = new ImprovementRule;
    r1->oldels.Append (Element2d (1, 2, 3, 4));
    r1->oldels.Append (Element2d (2, 6, 3));
    r1->oldels.Append (Element2d (1, 4, 5));
    r1->newels.Append (Element2d (1, 2, 4, 5));
    r1->newels.Append (Element2d (4, 2, 6, 3));
    r1->deledges.Append (INDEX_2 (1, 4));
    r1->deledges.Append (INDEX_2 (2, 3));
    r1->onp = 6;
    r1->bonus = 0;
    rules.Append (r1);

    // two quad + trig -> one quad + trig
    r1 = new ImprovementRule;
    r1->oldels.Append (Element2d (1, 2, 3, 4));
    r1->oldels.Append (Element2d (2, 5, 6, 3));
    r1->oldels.Append (Element2d (4, 3, 6));
    r1->newels.Append (Element2d (1, 2, 6, 4));
    r1->newels.Append (Element2d (2, 5, 6));
    r1->deledges.Append (INDEX_2 (2, 3));
    r1->deledges.Append (INDEX_2 (3, 4));
    r1->deledges.Append (INDEX_2 (3, 6));
    r1->onp = 6;
    r1->bonus = -1;
    rules.Append (r1);

    // swap quad + trig (a and b)
    r1 = new ImprovementRule;
    r1->oldels.Append (Element2d (1, 2, 3, 4));
    r1->oldels.Append (Element2d (2, 5, 3));
    r1->newels.Append (Element2d (2, 5, 3, 4));
    r1->newels.Append (Element2d (1, 2, 4));
    r1->deledges.Append (INDEX_2 (2, 3));
    r1->onp = 5;
    r1->bonus = 0;
    rules.Append (r1);

    r1 = new ImprovementRule;
    r1->oldels.Append (Element2d (1, 2, 3, 4));
    r1->oldels.Append (Element2d (2, 5, 3));
    r1->newels.Append (Element2d (1, 2, 5, 3));
    r1->newels.Append (Element2d (1, 3, 4));
    r1->deledges.Append (INDEX_2 (2, 3));
    r1->onp = 5;
    r1->bonus = 0;
    rules.Append (r1);


    // 2 quads to quad + 2 trigs
    r1 = new ImprovementRule;
    r1->oldels.Append (Element2d (1, 2, 3, 4));
    r1->oldels.Append (Element2d (3, 2, 5, 6));
    r1->newels.Append (Element2d (1, 5, 6, 4));
    r1->newels.Append (Element2d (1, 2, 5));
    r1->newels.Append (Element2d (4, 6, 3));
    r1->deledges.Append (INDEX_2 (2, 3));
    r1->onp = 6;
    r1->bonus = 0;
    //    rules.Append (r1);




    ARRAY<int> mapped(rules.Size());
    ARRAY<int> used(rules.Size());
    used = 0;
    mapped = 0;

  

    for (int ri = 0; ri < rules.Size(); ri++)
      {
	ImprovementRule & rule = *rules[ri];
	rule.incelsonnode.SetSize (rule.onp);
	rule.reused.SetSize (rule.onp);

	for (int j = 1; j <= rule.onp; j++)
	  {
	    rule.incelsonnode.Elem(j) = 0;
	    rule.reused.Elem(j) = 0;
	  }

	for (int j = 1; j <= rule.oldels.Size(); j++)
	  {
	    const Element2d & el = rule.oldels.Elem(j);
	    for (int k = 1; k <= el.GetNP(); k++)
	      rule.incelsonnode.Elem(el.PNum(k))--;
	  }

	for (int j = 1; j <= rule.newels.Size(); j++)
	  {
	    const Element2d & el = rule.newels.Elem(j);
	    for (int k = 1; k <= el.GetNP(); k++)
	      {
		rule.incelsonnode.Elem(el.PNum(k))++;
		rule.reused.Elem(el.PNum(k)) = 1;
	      }
	  }
      }



  
    TABLE<int,PointIndex::BASE> elonnode(np);
    ARRAY<int,PointIndex::BASE> nelonnode(np);
    TABLE<SurfaceElementIndex> nbels(ne);

    nelonnode = -4;

    for (SurfaceElementIndex sei = 0; sei < ne; sei++)
      {
	const Element2d & el = mesh[sei];

	if (el.GetIndex() == faceindex && !el.IsDeleted())
	  {
	    for (int j = 0; j < el.GetNP(); j++)
	      elonnode.Add (el[j], sei);
	  }
	if(!el.IsDeleted())
	  {
	    for (int j = 0; j < el.GetNP(); j++)
	      nelonnode[el[j]]++;
	  }
      }

    for (SurfaceElementIndex sei = 0; sei < ne; sei++)
      {
	const Element2d & el = mesh[sei];
	if (el.GetIndex() == faceindex && !el.IsDeleted())
	  {
	    for (int j = 0; j < el.GetNP(); j++)
	      {
		for (int k = 0; k < elonnode[el[j]].Size(); k++)
		  {
		    int nbel = elonnode[el[j]] [k];
		    bool inuse = false;
		    for (int l = 0; l < nbels[sei].Size(); l++)
		      if (nbels[sei][l] == nbel)
			inuse = true;
		    if (!inuse)
		      nbels.Add (sei, nbel);
		  }
	      }
	  }
      }


    for (int ri = 0; ri < rules.Size(); ri++)
      {
	const ImprovementRule & rule = *rules[ri];
      
	elmap.SetSize (rule.oldels.Size());
	elrot.SetSize (rule.oldels.Size());
	pmap.SetSize (rule.onp);
	pgi.SetSize (rule.onp);


	for (SurfaceElementIndex sei = 0; sei < ne; sei++)
	  {
	    if (multithread.terminate)
	      break;
	    if (mesh[sei].IsDeleted()) continue;

	    elmap[0] = sei;
	    FlatArray<SurfaceElementIndex> neighbours = nbels[sei];
	    
	    for (elrot[0] = 0; elrot[0] < mesh[sei].GetNP(); elrot[0]++)
	      {
		const Element2d & el0 = mesh[sei];
		const Element2d & rel0 = rule.oldels[0];

		if (el0.GetIndex() != faceindex) continue;
		if (el0.IsDeleted()) continue;
		if (el0.GetNP() != rel0.GetNP()) continue;


		pmap = -1;
 
		for (int k = 0; k < el0.GetNP(); k++)
		  {
		    pmap.Elem(rel0[k]) = el0.PNumMod(k+elrot[0]+1);
		    pgi.Elem(rel0[k]) = el0.GeomInfoPiMod(k+elrot[0]+1);
		  }
		
		ok = 1;
		for (int i = 1; i < elmap.Size(); i++)
		  {
		    // try to find a mapping for reference-element i

		    const Element2d & rel = rule.oldels[i];
		    bool possible = 0;

		    for (elmap[i] = 0; elmap[i] < neighbours.Size(); elmap[i]++)
		      {
			const Element2d & el = mesh[neighbours[elmap[i]]];
			if (el.IsDeleted()) continue;
			if (el.GetNP() != rel.GetNP()) continue;

			for (elrot[i] = 0; elrot[i] < rel.GetNP(); elrot[i]++)
			  {
			    possible = 1;

			    for (int k = 0; k < rel.GetNP(); k++)
			      if (pmap.Elem(rel[k]) != -1 &&
				  pmap.Elem(rel[k]) != el.PNumMod (k+elrot[i]+1))
				possible = 0;

			    if (possible) 
			      {
				for (int k = 0; k < el.GetNP(); k++)
				  {
				    pmap.Elem(rel[k]) = el.PNumMod(k+elrot[i]+1);
				    pgi.Elem(rel[k]) = el.GeomInfoPiMod(k+elrot[i]+1);
				  }
				break;
			      }
			  }
			if (possible) break;
		      }

		    if (!possible) 
		      {
			ok = 0;
			break;
		      }

		    elmap[i] = neighbours[elmap[i]];
		  }

		for(int i=0; ok && i<rule.deledges.Size(); i++)
		  {
		    ok = !mesh.IsSegment(pmap.Elem(rule.deledges[i].I1()),
					 pmap.Elem(rule.deledges[i].I2()));
		  }
								    
								    
		
		
		if (!ok) continue;

		mapped[ri]++;

		olddef = 0;
		for (int j = 1; j <= pmap.Size(); j++)
		  olddef += sqr (nelonnode[pmap.Get(j)]);
		olddef += rule.bonus;

		newdef = 0;
		for (int j = 1; j <= pmap.Size(); j++)
		  if (rule.reused.Get(j))
		    newdef += sqr (nelonnode[pmap.Get(j)] + 
				   rule.incelsonnode.Get(j));

		if (newdef > olddef)
		  continue;

		// calc metric badness
		double bad1 = 0, bad2 = 0;
		Vec<3> n;

		SelectSurfaceOfPoint (mesh.Point(pmap.Get(1)), pgi.Get(1));
		GetNormalVector (surfnr, mesh.Point(pmap.Get(1)), pgi.Elem(1), n);
		  
		for (int j = 1; j <= rule.oldels.Size(); j++)
		  bad1 += mesh.SurfaceElement(elmap.Get(j)).CalcJacobianBadness (mesh.Points(), n);
		  
		// check new element:
		for (int j = 1; j <= rule.newels.Size(); j++)
		  {
		    const Element2d & rnel = rule.newels.Get(j);
		    Element2d nel(rnel.GetNP());
		    for (int k = 1; k <= rnel.GetNP(); k++)
		      nel.PNum(k) = pmap.Get(rnel.PNum(k));

		    bad2 += nel.CalcJacobianBadness (mesh.Points(), n);
		  }

		if (bad2 > 1e3) continue;

		if (newdef == olddef && bad2 > bad1) continue;
		  

		// generate new element:
		for (int j = 1; j <= rule.newels.Size(); j++)
		  {
		    const Element2d & rnel = rule.newels.Get(j);
		    Element2d nel(rnel.GetNP());
		    nel.SetIndex (faceindex);
		    for (int k = 1; k <= rnel.GetNP(); k++)
		      {
			nel.PNum(k) = pmap.Get(rnel.PNum(k));
			nel.GeomInfoPi(k) = pgi.Get(rnel.PNum(k));
		      }
		      
		    mesh.AddSurfaceElement(nel);
		  }
		  
		for (int j = 0; j < rule.oldels.Size(); j++)
		  mesh.DeleteSurfaceElement ( elmap[j] );

		for (int j = 1; j <= pmap.Size(); j++)
		  nelonnode[pmap.Get(j)] += rule.incelsonnode.Get(j);

		used[ri]++;
	      }
	  }
      }

    mesh.Compress();

    for (int ri = 0; ri < rules.Size(); ri++)
      {
	PrintMessage (5, "rule ", ri+1, " ",
		      mapped[ri], "/", used[ri], " mapped/used");
      }
  }