void FeatureInvestigator::printSeed (Persistance::TextTableReport::Output& out,
Feature& feature,
const PositionVector& positions)
{
int currentField = Persistance::TextTableReport::firstFieldIndex;
Persistance::TextTableReport::Data data (_seedFormat);
TextWriter writer (NULL);
//
// print all scores
Scores::Score_ptr score = feature.score ();
while (score) {
writer.setStream (data.getOutputStream(currentField++));
writer << (- score->log10Score ());
score = score->next ();
}
//
// print the assignment
writer.setStream (data.getOutputStream(currentField++));
writer << _parameters.langauge ().format (feature.assignment ());
//
// print score params if available
writer.setStream (data.getOutputStream(currentField++));
feature.score ()->writeAsText (writer);
/*
if (feature.scoreParameters ()) {
writer << '[';
feature.scoreFunction ().writeAsText (writer, feature.scoreParameters ());
writer << ']';
}*/
//
// print projection details if available
writer.setStream (data.getOutputStream(currentField++));
if (feature.projection ()) {
writer << _parameters.langauge ().format (*feature.projection ());
}
/*
//
// print how many seeds counted for bonf correction, if available
writer.setStream (data.getOutputStream(currentField++));
if (feature.numSeedsSearched () > 0) {
writer << feature.numSeedsSearched();
}
*/
writer.setStream (NULL);
out << data;
}
