LIBSBML_EXTERN
void
copySBaseAttributes(const SBase& source,SBase& target)
{
target.setMetaId(source.getMetaId());
// target.setId(source.getId());
// target.setName(source.getName());
target.setSBMLDocument(const_cast<SBMLDocument*>(source.getSBMLDocument()));
target.setSBOTerm(source.getSBOTerm());
if(source.isSetAnnotation())
{
target.setAnnotation(new XMLNode(*const_cast<SBase&>(source).getAnnotation()));
}
if(source.isSetNotes())
{
target.setNotes(new XMLNode(*const_cast<SBase&>(source).getNotes()));
}
if (source.getSBMLNamespaces())
{
target.setSBMLNamespaces(source.getSBMLNamespaces());
}
List* pCVTerms=target.getCVTerms();
// first delete all the old CVTerms
if(pCVTerms)
{
while(pCVTerms->getSize()>0)
{
CVTerm* object=static_cast<CVTerm*>(pCVTerms->remove(0));
delete object;
}
// add the cloned CVTerms from source
if(source.getCVTerms()!=NULL)
{
unsigned int i=0,iMax=source.getCVTerms()->getSize();
while(i<iMax)
{
target.addCVTerm(static_cast<CVTerm*>(static_cast<CVTerm*>(source.getCVTerms()->get(i))->clone()));
++i;
}
}
}
}
// tests whether we are importing global render information
void test000098::test_export_notes()
{
CPPUNIT_ASSERT(pDataModel != NULL);
std::istringstream iss(test000098::CPS_MODEL_1);
CPPUNIT_ASSERT(load_cps_model_from_stream(iss, *pDataModel) == true);
std::string s;
try
{
s = pDataModel->exportSBMLToString(NULL, 2, 1);
}
catch (...)
{
CPPUNIT_ASSERT(false);
}
CPPUNIT_ASSERT(!s.empty());
SBMLReader reader;
SBMLDocument* pSBMLDocument = NULL;
try
{
pSBMLDocument = reader.readSBMLFromString(s);
}
catch (...)
{
CPPUNIT_ASSERT(false);
}
CPPUNIT_ASSERT(pSBMLDocument != NULL);
Model* pModel = pSBMLDocument->getModel();
CPPUNIT_ASSERT(pModel != NULL);
CPPUNIT_ASSERT(pModel->isSetNotes() == true);
std::string notes = pModel->getNotesString();
CPPUNIT_ASSERT(!notes.empty());
CPPUNIT_ASSERT(notes.find("Simple note on model") != std::string::npos);
CPPUNIT_ASSERT(pModel->getNumCompartments() == 1);
CPPUNIT_ASSERT(pModel->getNumSpecies() == 1);
CPPUNIT_ASSERT(pModel->getNumParameters() == 1);
CPPUNIT_ASSERT(pModel->getNumReactions() == 1);
CPPUNIT_ASSERT(pModel->getNumEvents() == 1);
// compartment
SBase* pObject = pModel->getCompartment(0);
CPPUNIT_ASSERT(pObject != NULL);
CPPUNIT_ASSERT(pObject->isSetNotes() == true);
notes = pObject->getNotesString();
CPPUNIT_ASSERT(!notes.empty());
CPPUNIT_ASSERT(notes.find("Simple note on compartment") != std::string::npos);
// species
pObject = pModel->getSpecies(0);
CPPUNIT_ASSERT(pObject != NULL);
CPPUNIT_ASSERT(pObject->isSetNotes() == true);
notes = pObject->getNotesString();
CPPUNIT_ASSERT(!notes.empty());
CPPUNIT_ASSERT(notes.find("Simple note on species") != std::string::npos);
// parameter
pObject = pModel->getParameter(0);
CPPUNIT_ASSERT(pObject != NULL);
CPPUNIT_ASSERT(pObject->isSetNotes() == true);
notes = pObject->getNotesString();
CPPUNIT_ASSERT(!notes.empty());
CPPUNIT_ASSERT(notes.find("Simple note on parameter") != std::string::npos);
// reaction
pObject = pModel->getReaction(0);
CPPUNIT_ASSERT(pObject != NULL);
CPPUNIT_ASSERT(pObject->isSetNotes() == true);
notes = pObject->getNotesString();
CPPUNIT_ASSERT(!notes.empty());
CPPUNIT_ASSERT(notes.find("Simple note on reaction") != std::string::npos);
// event
pObject = pModel->getEvent(0);
CPPUNIT_ASSERT(pObject != NULL);
CPPUNIT_ASSERT(pObject->isSetNotes() == true);
notes = pObject->getNotesString();
CPPUNIT_ASSERT(!notes.empty());
CPPUNIT_ASSERT(notes.find("Simple note on event") != std::string::npos);
}
